Wall clock time and date at job start Tue Mar 9 2021 14:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35900 * 116.99804 * 2 1 4 4 C 1.38752 * 120.03018 * 0.25846 * 3 2 1 5 5 C 1.38196 * 120.05572 * 180.29679 * 4 3 2 6 6 C 1.38153 * 120.10944 * 359.72302 * 5 4 3 7 7 C 1.38796 * 120.05218 * 359.97438 * 6 5 4 8 8 O 1.35897 * 120.02533 * 179.97438 * 7 6 5 9 9 C 1.42901 * 117.00144 * 0.02680 * 8 7 6 10 10 C 1.53003 * 109.47331 * 179.97438 * 9 8 7 11 11 H 1.08995 * 112.84737 * 45.33169 * 10 9 8 12 12 C 1.53781 * 113.61361 * 176.52853 * 10 9 8 13 13 C 1.53780 * 87.07844 * 139.97935 * 12 10 9 14 14 H 1.09006 * 113.61190 * 89.20060 * 13 12 10 15 15 N 1.46504 * 113.61292 * 220.01491 * 13 12 10 16 16 C 1.34783 * 119.99815 * 205.00044 * 15 13 12 17 17 O 1.21517 * 119.99898 * 0.02562 * 16 15 13 18 18 O 1.34634 * 119.99894 * 179.97438 * 16 15 13 19 19 C 1.45193 * 117.00212 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.46993 * 60.00074 * 19 18 16 21 21 C 1.52991 * 109.47370 * 180.02562 * 19 18 16 22 22 C 1.53007 * 109.47371 * 300.00744 * 19 18 16 23 23 C 1.53783 * 113.61414 * 274.13617 * 10 9 8 24 24 C 1.38613 * 119.94858 * 0.02562 * 7 6 5 25 25 C 1.50699 * 120.05529 * 179.97438 * 24 7 6 26 26 O 1.42905 * 109.46664 * 124.96260 * 25 24 7 27 27 Si 1.86297 * 109.47178 * 244.95914 * 25 24 7 28 28 H 1.09005 * 109.46985 * 299.99669 * 1 2 3 29 29 H 1.08996 * 109.47238 * 59.99729 * 1 2 3 30 30 H 1.08998 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.96954 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.94409 * 179.70065 * 5 4 3 33 33 H 1.07997 * 119.97268 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.46838 * 299.99985 * 9 8 7 35 35 H 1.09004 * 109.46995 * 59.99660 * 9 8 7 36 36 H 1.09001 * 113.61205 * 254.53078 * 12 10 9 37 37 H 1.09000 * 113.61463 * 25.35188 * 12 10 9 38 38 H 0.96996 * 119.99838 * 25.00648 * 15 13 12 39 39 H 1.09005 * 109.46725 * 60.00433 * 20 19 18 40 40 H 1.08997 * 109.47450 * 180.02562 * 20 19 18 41 41 H 1.08993 * 109.47359 * 300.00312 * 20 19 18 42 42 H 1.09000 * 109.47645 * 60.00306 * 21 19 18 43 43 H 1.09011 * 109.47623 * 180.02562 * 21 19 18 44 44 H 1.09005 * 109.47339 * 300.00174 * 21 19 18 45 45 H 1.08993 * 109.47171 * 59.99571 * 22 19 18 46 46 H 1.08998 * 109.47300 * 180.02562 * 22 19 18 47 47 H 1.09004 * 109.46276 * 299.99421 * 22 19 18 48 48 H 1.09001 * 113.61267 * 334.56988 * 23 10 9 49 49 H 1.08999 * 113.61616 * 105.46956 * 23 10 9 50 50 H 1.08999 * 109.46813 * 4.96398 * 25 24 7 51 51 H 0.96695 * 114.00044 * 304.77509 * 26 25 24 52 52 H 1.48496 * 110.00203 * 294.50488 * 27 25 24 53 53 H 1.48503 * 109.99701 * 55.82714 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2908 2.3749 0.0054 5 6 1.9176 3.6066 -0.0008 6 6 3.2970 3.6822 -0.0066 7 6 4.0568 2.5207 -0.0057 8 8 5.4137 2.5957 -0.0119 9 6 5.9912 3.9028 -0.0187 10 6 7.5168 3.7864 -0.0244 11 1 7.8822 3.0477 -0.7378 12 6 8.2376 5.1416 -0.1172 13 6 9.2483 4.5847 0.8993 14 1 10.0889 4.0650 0.4393 15 7 9.6664 5.5625 1.9070 16 6 10.8572 5.4272 2.5238 17 8 11.5841 4.4946 2.2437 18 8 11.2416 6.3260 3.4496 19 6 12.5361 6.1173 4.0733 20 6 13.6279 6.1383 3.0016 21 6 12.7975 7.2301 5.0902 22 6 12.5466 4.7632 4.7856 23 6 8.1289 3.6429 1.3790 24 6 3.4305 1.2841 0.0005 25 6 4.2532 0.0214 0.0009 26 8 3.8707 -0.7958 1.1091 27 14 3.9628 -0.9094 -1.5865 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2123 2.3184 0.0101 32 1 1.3281 4.5114 -0.0014 33 1 3.7845 4.6459 -0.0110 34 1 5.6640 4.4399 -0.9090 35 1 5.6719 4.4457 0.8710 36 1 8.6693 5.3403 -1.0982 37 1 7.6488 5.9763 0.2631 38 1 9.0863 6.3070 2.1304 39 1 13.6204 7.1029 2.4942 40 1 14.5996 5.9811 3.4698 41 1 13.4414 5.3453 2.2775 42 1 12.0197 7.2148 5.8537 43 1 13.7696 7.0737 5.5582 44 1 12.7899 8.1949 4.5831 45 1 12.3602 3.9703 4.0614 46 1 13.5182 4.6068 5.2543 47 1 11.7688 4.7484 5.5491 48 1 7.5108 4.0669 2.1704 49 1 8.4730 2.6335 1.6042 50 1 5.3096 0.2762 0.0848 51 1 3.9260 -0.3490 1.9648 52 1 2.5550 -1.3774 -1.6506 53 1 4.2611 -0.0355 -2.7495 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_215219_15734236.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:13:15 Heat of formation + Delta-G solvation = -131.093206 kcal Electronic energy + Delta-G solvation = -33516.365376 eV Core-core repulsion = 28935.828884 eV Total energy + Delta-G solvation = -4580.536492 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.197 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.97346 -41.79128 -40.65254 -39.77014 -38.05559 -37.67577 -37.21849 -35.42227 -34.25812 -32.70459 -30.69491 -29.37366 -28.38801 -28.32665 -28.30430 -26.77288 -26.59925 -24.98053 -23.19843 -22.79898 -22.10480 -21.41644 -20.53902 -19.72613 -19.12408 -18.48845 -18.05280 -17.59090 -17.37326 -17.24703 -17.17440 -16.83647 -16.54895 -16.51851 -16.11076 -15.74350 -15.55616 -15.46800 -15.36278 -15.09714 -14.52332 -14.24970 -14.15399 -14.06538 -13.54667 -13.47457 -13.44228 -13.37528 -13.14629 -13.11979 -12.93812 -12.88607 -12.72199 -12.64429 -12.50375 -12.45138 -12.34196 -12.18735 -12.04916 -11.80740 -11.71934 -11.41378 -11.34753 -11.30343 -11.12357 -10.97712 -10.17108 -9.49996 -9.24190 -4.89303 0.11558 0.27842 1.15011 1.44270 1.59577 1.71196 1.79504 2.08843 2.53446 2.55422 3.13682 3.37874 3.47502 3.51824 3.72390 3.73093 3.75933 3.77110 3.78771 3.91441 3.92591 3.96762 4.03465 4.17721 4.22621 4.25979 4.27243 4.31520 4.40024 4.47124 4.50514 4.59307 4.62246 4.62686 4.68492 4.73982 4.74458 4.78084 4.78706 4.84741 4.85812 4.94424 5.02032 5.06657 5.09745 5.14953 5.17371 5.25137 5.30228 5.31695 5.40202 5.48692 5.58227 6.22536 6.30112 6.38586 6.69131 7.32533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.318 6.318 3 C 0.159 3.841 4 C -0.256 4.256 5 C -0.034 4.034 6 C -0.249 4.249 7 C 0.172 3.828 8 O -0.318 6.318 9 C 0.066 3.934 10 C -0.102 4.102 11 H 0.104 0.896 12 C -0.117 4.117 13 C 0.134 3.866 14 H 0.104 0.896 15 N -0.689 5.689 16 C 0.642 3.358 17 O -0.595 6.595 18 O -0.370 6.370 19 C 0.127 3.873 20 C -0.180 4.180 21 C -0.138 4.138 22 C -0.180 4.180 23 C -0.145 4.145 24 C -0.219 4.219 25 C -0.058 4.058 26 O -0.542 6.542 27 Si 0.796 3.204 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.112 0.888 31 H 0.148 0.852 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.418 0.582 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.061 0.939 48 H 0.094 0.906 49 H 0.064 0.936 50 H 0.079 0.921 51 H 0.369 0.631 52 H -0.277 1.277 53 H -0.289 1.289 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.723 5.830 0.849 6.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.231 6.231 3 C 0.113 3.887 4 C -0.275 4.275 5 C -0.052 4.052 6 C -0.268 4.268 7 C 0.125 3.875 8 O -0.232 6.232 9 C -0.008 4.008 10 C -0.121 4.121 11 H 0.123 0.877 12 C -0.155 4.155 13 C 0.031 3.969 14 H 0.122 0.878 15 N -0.348 5.348 16 C 0.396 3.604 17 O -0.486 6.486 18 O -0.284 6.284 19 C 0.091 3.909 20 C -0.237 4.237 21 C -0.195 4.195 22 C -0.237 4.237 23 C -0.184 4.184 24 C -0.221 4.221 25 C -0.167 4.167 26 O -0.348 6.348 27 Si 0.699 3.301 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.130 0.870 31 H 0.166 0.834 32 H 0.175 0.825 33 H 0.173 0.827 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.131 0.869 38 H 0.255 0.745 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.080 0.920 48 H 0.112 0.888 49 H 0.082 0.918 50 H 0.097 0.903 51 H 0.217 0.783 52 H -0.204 1.204 53 H -0.216 1.216 Dipole moment (debyes) X Y Z Total from point charges -1.595 4.584 -0.421 4.872 hybrid contribution -0.872 1.762 1.035 2.222 sum -2.467 6.346 0.615 6.836 Atomic orbital electron populations 1.23358 0.76701 1.05374 1.02393 1.86225 1.23031 1.26201 1.87607 1.18751 0.91161 0.85425 0.93368 1.21471 1.01298 0.91945 1.12752 1.21158 0.94037 0.97899 0.92133 1.21476 0.95137 0.97892 1.12282 1.18500 0.83028 0.92708 0.93265 1.86030 1.16416 1.32992 1.87751 1.23094 0.92797 0.81877 1.03076 1.22291 0.91770 0.99619 0.98421 0.87742 1.23333 0.95629 0.96577 0.99987 1.22588 0.96179 0.89821 0.88359 0.87785 1.44756 1.17009 1.31441 1.41608 1.18457 0.82816 0.80611 0.78541 1.90908 1.54797 1.34984 1.67895 1.86308 1.39826 1.50716 1.51590 1.22344 0.78427 0.97408 0.92730 1.22472 0.98898 1.02910 0.99428 1.21891 1.03655 0.96671 0.97248 1.22474 1.03755 0.96627 1.00883 1.23624 0.97219 1.00286 0.97278 1.19029 0.91706 0.94741 1.16649 1.24876 0.98737 0.92464 1.00614 1.86685 1.90740 1.40578 1.16761 0.93420 0.82120 0.84020 0.70578 0.91030 0.91850 0.87018 0.83421 0.82456 0.82655 0.90116 0.90124 0.88788 0.86899 0.74477 0.91869 0.89507 0.91801 0.91205 0.88349 0.91115 0.91842 0.89486 0.92008 0.88773 0.91752 0.90266 0.78274 1.20372 1.21628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 113.37 1.11 1.12 16 2 O -0.32 -2.71 7.34 -81.15 -0.60 -3.30 16 3 C 0.16 1.20 6.11 22.49 0.14 1.34 16 4 C -0.26 -0.74 9.04 22.38 0.20 -0.54 16 5 C -0.03 0.00 10.04 22.24 0.22 0.22 16 6 C -0.25 -0.14 9.04 22.38 0.20 0.06 16 7 C 0.17 0.81 6.66 22.49 0.15 0.96 16 8 O -0.32 -0.86 8.91 -92.39 -0.82 -1.69 16 9 C 0.07 -0.30 4.56 71.98 0.33 0.03 16 10 C -0.10 0.54 4.00 -10.27 -0.04 0.50 16 11 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 12 C -0.12 0.96 7.40 31.12 0.23 1.19 16 13 C 0.13 -0.32 4.24 45.57 0.19 -0.13 16 14 H 0.10 0.18 7.46 -2.38 -0.02 0.16 16 15 N -0.69 0.57 5.36 -567.30 -3.04 -2.47 16 16 C 0.64 4.03 8.06 129.79 1.05 5.08 16 17 O -0.59 -7.14 11.48 19.79 0.23 -6.92 16 18 O -0.37 -1.90 9.94 -55.44 -0.55 -2.45 16 19 C 0.13 0.37 1.13 -10.79 -0.01 0.36 16 20 C -0.18 -0.57 8.37 71.98 0.60 0.03 16 21 C -0.14 0.31 8.85 71.98 0.64 0.94 16 22 C -0.18 -0.63 8.37 71.98 0.60 -0.03 16 23 C -0.15 0.40 7.45 31.18 0.23 0.63 16 24 C -0.22 -1.71 4.43 -19.68 -0.09 -1.80 16 25 C -0.06 -0.42 2.65 71.24 0.19 -0.23 16 26 O -0.54 -4.21 11.90 -137.71 -1.64 -5.85 16 27 Si 0.80 5.62 31.67 68.60 2.17 7.80 16 28 H 0.07 -0.19 7.65 -2.38 -0.02 -0.21 16 29 H 0.06 -0.10 7.67 -2.39 -0.02 -0.12 16 30 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.15 -0.20 6.29 -2.91 -0.02 -0.21 16 32 H 0.16 -0.94 8.06 -2.91 -0.02 -0.96 16 33 H 0.16 -0.79 6.29 -2.91 -0.02 -0.81 16 34 H 0.08 -0.55 7.66 -2.39 -0.02 -0.57 16 35 H 0.08 -0.58 7.39 -2.39 -0.02 -0.60 16 36 H 0.09 -0.84 8.14 -2.39 -0.02 -0.85 16 37 H 0.11 -1.35 8.08 -2.39 -0.02 -1.37 16 38 H 0.42 -2.49 8.84 -92.71 -0.82 -3.31 16 39 H 0.06 0.14 8.14 -2.38 -0.02 0.13 16 40 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 42 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.10 -0.53 8.14 -2.38 -0.02 -0.55 16 44 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 45 H 0.06 0.57 5.88 -2.39 -0.01 0.55 16 46 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 48 H 0.09 -0.37 7.92 -2.39 -0.02 -0.38 16 49 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 50 H 0.08 0.46 6.83 -2.39 -0.02 0.45 16 51 H 0.37 1.07 9.02 -74.06 -0.67 0.40 16 52 H -0.28 -3.56 6.47 99.48 0.64 -2.91 16 53 H -0.29 -3.21 7.11 99.48 0.71 -2.50 16 Total: 0.00 -20.30 420.86 1.11 -19.19 By element: Atomic # 1 Polarization: -13.45 SS G_CDS: -0.58 Total: -14.03 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 5.95 Total: 9.73 kcal Atomic # 7 Polarization: 0.57 SS G_CDS: -3.04 Total: -2.47 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -3.38 Total: -20.21 kcal Atomic # 14 Polarization: 5.62 SS G_CDS: 2.17 Total: 7.80 kcal Total: -20.30 1.11 -19.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_215219_15734236.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.905 kcal (2) G-P(sol) polarization free energy of solvation -20.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds