Wall clock time and date at job start Tue Mar 9 2021 14:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99853 * 2 1 4 4 C 1.38615 * 120.02671 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.05454 * 0.02562 * 4 3 2 6 6 O 1.42904 * 109.46896 * 305.30172 * 5 4 3 7 7 Si 1.86297 * 109.47384 * 65.30272 * 5 4 3 8 8 C 1.38659 * 119.89039 * 180.02562 * 4 3 2 9 9 O 1.35889 * 120.02592 * 179.97438 * 8 4 3 10 10 C 1.42899 * 116.99855 * 180.02562 * 9 8 4 11 11 C 1.53002 * 109.47077 * 180.02562 * 10 9 8 12 12 H 1.09003 * 112.85399 * 43.80259 * 11 10 9 13 13 C 1.53786 * 113.61624 * 174.99849 * 11 10 9 14 14 C 1.53784 * 87.07814 * 89.11645 * 13 11 10 15 15 O 1.42906 * 113.61521 * 270.79835 * 14 13 11 16 16 C 1.42897 * 114.00077 * 294.62759 * 15 14 13 17 17 C 1.53004 * 113.61277 * 139.98503 * 14 13 11 18 18 F 1.39899 * 109.47269 * 55.23596 * 17 14 13 19 19 F 1.39904 * 109.46943 * 175.24004 * 17 14 13 20 20 F 1.39897 * 109.46789 * 295.23603 * 17 14 13 21 21 C 1.53776 * 87.08264 * 25.43378 * 14 13 11 22 22 C 1.38757 * 119.94409 * 0.02562 * 8 4 3 23 23 C 1.38199 * 120.05276 * 359.72253 * 22 8 4 24 24 C 1.38150 * 120.10895 * 0.54922 * 23 22 8 25 25 H 1.08995 * 109.47141 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47028 * 299.99778 * 1 2 3 27 27 H 1.09000 * 109.47028 * 59.99914 * 1 2 3 28 28 H 1.08998 * 109.47302 * 185.30440 * 5 4 3 29 29 H 0.96695 * 113.99884 * 302.25405 * 6 5 4 30 30 H 1.48500 * 110.00039 * 299.08283 * 7 5 4 31 31 H 1.48503 * 109.99938 * 60.40112 * 7 5 4 32 32 H 1.08997 * 109.47202 * 299.99995 * 10 9 8 33 33 H 1.08995 * 109.47424 * 60.00315 * 10 9 8 34 34 H 1.08998 * 113.61466 * 203.66545 * 13 11 10 35 35 H 1.09003 * 113.61406 * 334.48656 * 13 11 10 36 36 H 1.09002 * 109.47149 * 174.77883 * 16 15 14 37 37 H 1.09002 * 109.47021 * 294.77197 * 16 15 14 38 38 H 1.08996 * 109.47391 * 54.77132 * 16 15 14 39 39 H 1.08996 * 113.61543 * 220.01658 * 21 14 13 40 40 H 1.09005 * 113.61549 * 89.11527 * 21 14 13 41 41 H 1.07996 * 119.97152 * 179.97438 * 22 8 4 42 42 H 1.08002 * 119.93828 * 180.28026 * 23 22 8 43 43 H 1.08003 * 119.96935 * 179.72173 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4302 1.2841 0.0005 5 6 4.2527 0.0215 0.0005 6 8 3.8599 -0.8029 1.0998 7 14 3.9774 -0.8991 -1.5955 8 6 4.0567 2.5211 0.0011 9 8 5.4135 2.5961 0.0021 10 6 5.9910 3.9032 0.0032 11 6 7.5165 3.7868 0.0036 12 1 7.8837 3.0322 -0.6920 13 6 8.2377 5.1396 -0.1181 14 6 8.1897 5.2142 1.4172 15 8 7.0069 5.8363 1.9234 16 6 6.8882 7.2199 1.5865 17 6 9.4691 5.7720 2.0440 18 9 9.7527 7.0244 1.4889 19 9 9.2926 5.9033 3.4257 20 9 10.5318 4.8981 1.7906 21 6 8.1256 3.6778 1.4115 22 6 3.2970 3.6822 0.0016 23 6 1.9171 3.6065 -0.0042 24 6 1.2906 2.3753 0.0009 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 5.3084 0.2755 0.0960 29 1 3.9438 -0.3742 1.9625 30 1 2.5457 -1.2707 -1.7271 31 1 4.3912 -0.0561 -2.7459 32 1 5.6685 4.4436 -0.8867 33 1 5.6672 4.4427 0.8932 34 1 9.2478 5.0613 -0.5200 35 1 7.6436 5.9081 -0.6127 36 1 5.9231 7.5952 1.9267 37 1 7.6874 7.7815 2.0702 38 1 6.9636 7.3384 0.5056 39 1 7.4407 3.2665 2.1529 40 1 9.1052 3.1998 1.4276 41 1 3.7845 4.6459 0.0024 42 1 1.3277 4.5115 -0.0083 43 1 0.2120 2.3188 0.0009 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_215219_17321600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:36:03 Heat of formation + Delta-G solvation = -233.616607 kcal Electronic energy + Delta-G solvation = -32621.862233 eV Core-core repulsion = 27607.465166 eV Total energy + Delta-G solvation = -5014.397066 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.127 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.20444 -48.75123 -48.63736 -41.98586 -41.39470 -39.93057 -37.81323 -37.26903 -36.95411 -32.67313 -30.95839 -30.15755 -28.53246 -28.31927 -27.31100 -26.95509 -26.45865 -23.76115 -22.76996 -22.51466 -20.67996 -19.96356 -19.58105 -19.46567 -19.23412 -18.33453 -17.66178 -17.46717 -17.31838 -17.03183 -16.68237 -16.60065 -16.45248 -16.05453 -15.76910 -15.58534 -15.53669 -15.36700 -15.15548 -15.10192 -14.90637 -14.82566 -14.72518 -14.36891 -14.12621 -13.92051 -13.69695 -13.41851 -13.31495 -13.24935 -12.95073 -12.84563 -12.61827 -12.34539 -12.21547 -12.08725 -11.82321 -11.79071 -11.61285 -11.14700 -10.94204 -10.81530 -9.37449 -9.15615 -4.65445 0.21942 0.38038 1.50654 1.66780 1.69374 1.89408 1.93028 2.33989 2.46039 2.53329 2.57762 2.65390 2.81003 3.16755 3.30612 3.41940 3.55137 3.61604 3.85854 3.92793 3.96765 3.99224 4.06100 4.11852 4.14089 4.17820 4.20474 4.22866 4.27877 4.29763 4.34883 4.42820 4.50067 4.55276 4.58261 4.60781 4.65710 4.81040 4.88456 5.12837 5.23342 5.38597 5.43729 5.53976 6.24487 6.37090 6.81172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.292 6.292 3 C 0.179 3.821 4 C -0.194 4.194 5 C -0.056 4.056 6 O -0.530 6.530 7 Si 0.741 3.259 8 C 0.181 3.819 9 O -0.305 6.305 10 C 0.069 3.931 11 C -0.099 4.099 12 H 0.108 0.892 13 C -0.143 4.143 14 C 0.039 3.961 15 O -0.333 6.333 16 C 0.010 3.990 17 C 0.437 3.563 18 F -0.182 7.182 19 F -0.174 7.174 20 F -0.174 7.174 21 C -0.111 4.111 22 C -0.246 4.246 23 C -0.034 4.034 24 C -0.248 4.248 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.360 0.640 30 H -0.242 1.242 31 H -0.262 1.262 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 1.616 -1.750 2.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.204 6.204 3 C 0.132 3.868 4 C -0.196 4.196 5 C -0.164 4.164 6 O -0.334 6.334 7 Si 0.639 3.361 8 C 0.135 3.865 9 O -0.219 6.219 10 C -0.005 4.005 11 C -0.117 4.117 12 H 0.126 0.874 13 C -0.180 4.180 14 C -0.004 4.004 15 O -0.250 6.250 16 C -0.086 4.086 17 C 0.382 3.618 18 F -0.163 7.163 19 F -0.155 7.155 20 F -0.156 7.156 21 C -0.148 4.148 22 C -0.265 4.265 23 C -0.052 4.052 24 C -0.267 4.267 25 H 0.122 0.878 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.207 0.793 30 H -0.166 1.166 31 H -0.188 1.188 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.136 0.864 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.478 0.753 -2.858 3.304 hybrid contribution -0.200 2.549 1.072 2.773 sum -1.677 3.303 -1.786 4.112 Atomic orbital electron populations 1.23148 0.78208 1.04419 1.01391 1.86280 1.21271 1.25503 1.87334 1.18488 0.90840 0.84913 0.92511 1.18834 0.91312 0.94147 1.15277 1.24867 0.98335 0.92180 1.01031 1.86753 1.89618 1.41105 1.15965 0.93922 0.84071 0.86278 0.71782 1.18309 0.82291 0.92565 0.93329 1.85981 1.16923 1.30993 1.87964 1.22796 0.91833 0.82910 1.03004 1.22082 0.92947 0.98386 0.98336 0.87382 1.23599 1.03581 0.98272 0.92552 1.24053 0.83389 0.97379 0.95566 1.88087 1.36670 1.24605 1.75669 1.23148 1.03813 0.80813 1.00837 1.21159 0.87079 0.76138 0.77380 1.93194 1.94665 1.43234 1.85232 1.93224 1.95376 1.95692 1.31216 1.93183 1.59375 1.69090 1.93908 1.23269 1.04350 0.88906 0.98309 1.21156 0.94890 0.97426 1.13021 1.20771 0.93748 0.97283 0.93391 1.21200 1.00415 0.92067 1.12978 0.87821 0.92326 0.92648 0.90675 0.79343 1.16628 1.18756 0.91384 0.89559 0.86803 0.88719 0.87990 0.92735 0.92601 0.88236 0.86392 0.85061 0.85174 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 101.05 0.99 0.99 16 2 O -0.29 -1.03 7.34 -31.98 -0.23 -1.27 16 3 C 0.18 0.60 6.11 -39.24 -0.24 0.36 16 4 C -0.19 -0.66 4.44 -104.33 -0.46 -1.12 16 5 C -0.06 -0.15 2.64 36.00 0.10 -0.06 16 6 O -0.53 -1.55 11.84 -47.79 -0.57 -2.12 16 7 Si 0.74 1.78 31.75 -169.99 -5.40 -3.62 16 8 C 0.18 0.45 6.66 -39.23 -0.26 0.19 16 9 O -0.31 -0.44 8.91 -19.39 -0.17 -0.61 16 10 C 0.07 -0.08 4.32 37.16 0.16 0.09 16 11 C -0.10 0.22 4.20 -89.80 -0.38 -0.15 16 12 H 0.11 -0.30 8.14 -51.93 -0.42 -0.72 16 13 C -0.14 0.41 6.50 -25.91 -0.17 0.24 16 14 C 0.04 -0.04 0.84 -89.81 -0.08 -0.11 16 15 O -0.33 0.12 8.37 -35.23 -0.29 -0.18 16 16 C 0.01 -0.02 10.29 101.05 1.04 1.02 16 17 C 0.44 0.31 2.52 37.16 0.09 0.41 16 18 F -0.18 -0.18 15.40 2.25 0.03 -0.15 16 19 F -0.17 -0.44 17.10 2.25 0.04 -0.41 16 20 F -0.17 -0.14 15.81 2.25 0.04 -0.11 16 21 C -0.11 0.19 6.89 -25.92 -0.18 0.01 16 22 C -0.25 -0.29 9.04 -39.40 -0.36 -0.65 16 23 C -0.03 -0.03 10.04 -39.63 -0.40 -0.43 16 24 C -0.25 -0.42 9.04 -39.41 -0.36 -0.78 16 25 H 0.10 -0.14 8.14 -51.93 -0.42 -0.57 16 26 H 0.06 -0.08 7.66 -51.93 -0.40 -0.47 16 27 H 0.05 -0.05 7.66 -51.93 -0.40 -0.45 16 28 H 0.08 0.14 6.83 -51.93 -0.35 -0.21 16 29 H 0.36 0.19 9.05 45.56 0.41 0.60 16 30 H -0.24 -1.19 6.42 56.52 0.36 -0.83 16 31 H -0.26 -1.11 7.11 56.52 0.40 -0.71 16 32 H 0.07 -0.13 7.66 -51.93 -0.40 -0.53 16 33 H 0.09 -0.07 5.64 -51.93 -0.29 -0.36 16 34 H 0.11 -0.41 8.05 -51.93 -0.42 -0.83 16 35 H 0.09 -0.36 6.64 -51.93 -0.34 -0.70 16 36 H 0.10 -0.34 8.14 -51.93 -0.42 -0.77 16 37 H 0.05 -0.07 6.71 -51.93 -0.35 -0.42 16 38 H 0.06 -0.19 6.55 -51.93 -0.34 -0.53 16 39 H 0.10 -0.10 8.10 -51.93 -0.42 -0.52 16 40 H 0.12 -0.30 7.02 -51.93 -0.36 -0.67 16 41 H 0.13 -0.10 6.29 -52.49 -0.33 -0.43 16 42 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 43 H 0.13 -0.03 6.29 -52.48 -0.33 -0.36 16 LS Contribution 356.03 15.07 5.37 5.37 Total: 0.00 -6.26 356.03 -6.94 -13.20 By element: Atomic # 1 Polarization: -4.86 SS G_CDS: -5.25 Total: -10.11 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -0.49 Total: 0.01 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: -1.27 Total: -4.18 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.11 Total: -0.66 kcal Atomic # 14 Polarization: 1.78 SS G_CDS: -5.40 Total: -3.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -6.26 -6.94 -13.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_215219_17321600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.419 kcal (2) G-P(sol) polarization free energy of solvation -6.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds