Wall clock time and date at job start Tue Mar 9 2021 14:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99853 * 2 1 4 4 C 1.38615 * 120.02671 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.05454 * 0.02562 * 4 3 2 6 6 O 1.42904 * 109.46896 * 305.30172 * 5 4 3 7 7 Si 1.86297 * 109.47384 * 65.30272 * 5 4 3 8 8 C 1.38659 * 119.89039 * 180.02562 * 4 3 2 9 9 O 1.35889 * 120.02592 * 179.97438 * 8 4 3 10 10 C 1.42899 * 116.99855 * 180.02562 * 9 8 4 11 11 C 1.53002 * 109.47077 * 180.02562 * 10 9 8 12 12 H 1.09003 * 112.85399 * 43.80259 * 11 10 9 13 13 C 1.53786 * 113.61624 * 174.99849 * 11 10 9 14 14 C 1.53784 * 87.07814 * 89.11645 * 13 11 10 15 15 O 1.42906 * 113.61521 * 270.79835 * 14 13 11 16 16 C 1.42897 * 114.00077 * 294.62759 * 15 14 13 17 17 C 1.53004 * 113.61277 * 139.98503 * 14 13 11 18 18 F 1.39899 * 109.47269 * 55.23596 * 17 14 13 19 19 F 1.39904 * 109.46943 * 175.24004 * 17 14 13 20 20 F 1.39897 * 109.46789 * 295.23603 * 17 14 13 21 21 C 1.53776 * 87.08264 * 25.43378 * 14 13 11 22 22 C 1.38757 * 119.94409 * 0.02562 * 8 4 3 23 23 C 1.38199 * 120.05276 * 359.72253 * 22 8 4 24 24 C 1.38150 * 120.10895 * 0.54922 * 23 22 8 25 25 H 1.08995 * 109.47141 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47028 * 299.99778 * 1 2 3 27 27 H 1.09000 * 109.47028 * 59.99914 * 1 2 3 28 28 H 1.08998 * 109.47302 * 185.30440 * 5 4 3 29 29 H 0.96695 * 113.99884 * 302.25405 * 6 5 4 30 30 H 1.48500 * 110.00039 * 299.08283 * 7 5 4 31 31 H 1.48503 * 109.99938 * 60.40112 * 7 5 4 32 32 H 1.08997 * 109.47202 * 299.99995 * 10 9 8 33 33 H 1.08995 * 109.47424 * 60.00315 * 10 9 8 34 34 H 1.08998 * 113.61466 * 203.66545 * 13 11 10 35 35 H 1.09003 * 113.61406 * 334.48656 * 13 11 10 36 36 H 1.09002 * 109.47149 * 174.77883 * 16 15 14 37 37 H 1.09002 * 109.47021 * 294.77197 * 16 15 14 38 38 H 1.08996 * 109.47391 * 54.77132 * 16 15 14 39 39 H 1.08996 * 113.61543 * 220.01658 * 21 14 13 40 40 H 1.09005 * 113.61549 * 89.11527 * 21 14 13 41 41 H 1.07996 * 119.97152 * 179.97438 * 22 8 4 42 42 H 1.08002 * 119.93828 * 180.28026 * 23 22 8 43 43 H 1.08003 * 119.96935 * 179.72173 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4302 1.2841 0.0005 5 6 4.2527 0.0215 0.0005 6 8 3.8599 -0.8029 1.0998 7 14 3.9774 -0.8991 -1.5955 8 6 4.0567 2.5211 0.0011 9 8 5.4135 2.5961 0.0021 10 6 5.9910 3.9032 0.0032 11 6 7.5165 3.7868 0.0036 12 1 7.8837 3.0322 -0.6920 13 6 8.2377 5.1396 -0.1181 14 6 8.1897 5.2142 1.4172 15 8 7.0069 5.8363 1.9234 16 6 6.8882 7.2199 1.5865 17 6 9.4691 5.7720 2.0440 18 9 9.7527 7.0244 1.4889 19 9 9.2926 5.9033 3.4257 20 9 10.5318 4.8981 1.7906 21 6 8.1256 3.6778 1.4115 22 6 3.2970 3.6822 0.0016 23 6 1.9171 3.6065 -0.0042 24 6 1.2906 2.3753 0.0009 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 5.3084 0.2755 0.0960 29 1 3.9438 -0.3742 1.9625 30 1 2.5457 -1.2707 -1.7271 31 1 4.3912 -0.0561 -2.7459 32 1 5.6685 4.4436 -0.8867 33 1 5.6672 4.4427 0.8932 34 1 9.2478 5.0613 -0.5200 35 1 7.6436 5.9081 -0.6127 36 1 5.9231 7.5952 1.9267 37 1 7.6874 7.7815 2.0702 38 1 6.9636 7.3384 0.5056 39 1 7.4407 3.2665 2.1529 40 1 9.1052 3.1998 1.4276 41 1 3.7845 4.6459 0.0024 42 1 1.3277 4.5115 -0.0083 43 1 0.2120 2.3188 0.0009 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_215219_17321600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:36:02 Heat of formation + Delta-G solvation = -228.687555 kcal Electronic energy + Delta-G solvation = -32621.648493 eV Core-core repulsion = 27607.465166 eV Total energy + Delta-G solvation = -5014.183327 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.127 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.26611 -48.79944 -48.74032 -41.97016 -41.35516 -39.97359 -37.87134 -37.34772 -36.90790 -32.75500 -30.94693 -30.16065 -28.49402 -28.17837 -27.28166 -26.78272 -26.56433 -23.73089 -22.82181 -22.56967 -20.58570 -19.95819 -19.61680 -19.52598 -19.21236 -18.47090 -17.70927 -17.39120 -17.34292 -17.06283 -16.68533 -16.53832 -16.46980 -16.02889 -15.67910 -15.65686 -15.60263 -15.52924 -15.20463 -15.17212 -14.97811 -14.91034 -14.71884 -14.33298 -14.10800 -14.04023 -13.72329 -13.32644 -13.23912 -13.18114 -12.94048 -12.70975 -12.55496 -12.40306 -12.20301 -11.98229 -11.95980 -11.67255 -11.63397 -11.29320 -10.97715 -10.83005 -9.49108 -9.23391 -4.87134 0.12546 0.28614 1.46917 1.52130 1.60439 1.74942 2.07261 2.10767 2.48731 2.56108 2.56846 2.61875 2.88805 3.29462 3.36444 3.49019 3.52637 3.69830 3.77401 3.92995 4.00124 4.05893 4.18204 4.22038 4.25470 4.28023 4.29033 4.31815 4.36965 4.44232 4.49645 4.50530 4.63790 4.64102 4.69082 4.75679 4.79146 4.82420 5.01108 5.10657 5.15568 5.32333 5.40769 5.69713 6.21536 6.30368 6.72511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.315 6.315 3 C 0.161 3.839 4 C -0.217 4.217 5 C -0.058 4.058 6 O -0.541 6.541 7 Si 0.798 3.202 8 C 0.172 3.828 9 O -0.315 6.315 10 C 0.066 3.934 11 C -0.094 4.094 12 H 0.115 0.885 13 C -0.133 4.133 14 C 0.036 3.964 15 O -0.345 6.345 16 C 0.004 3.996 17 C 0.432 3.568 18 F -0.185 7.185 19 F -0.189 7.189 20 F -0.176 7.176 21 C -0.113 4.113 22 C -0.249 4.249 23 C -0.035 4.035 24 C -0.255 4.255 25 H 0.112 0.888 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.369 0.631 30 H -0.279 1.279 31 H -0.288 1.288 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 2.544 -2.186 3.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.228 6.228 3 C 0.114 3.886 4 C -0.219 4.219 5 C -0.167 4.167 6 O -0.346 6.346 7 Si 0.701 3.299 8 C 0.125 3.875 9 O -0.228 6.228 10 C -0.008 4.008 11 C -0.113 4.113 12 H 0.133 0.867 13 C -0.170 4.170 14 C -0.006 4.006 15 O -0.263 6.263 16 C -0.091 4.091 17 C 0.377 3.623 18 F -0.166 7.166 19 F -0.170 7.170 20 F -0.158 7.158 21 C -0.150 4.150 22 C -0.268 4.268 23 C -0.053 4.053 24 C -0.274 4.274 25 H 0.130 0.870 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.217 0.783 30 H -0.205 1.205 31 H -0.215 1.215 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.143 0.857 41 H 0.169 0.831 42 H 0.174 0.826 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.642 1.684 -3.278 4.034 hybrid contribution -0.177 2.321 1.228 2.632 sum -1.819 4.006 -2.050 4.853 Atomic orbital electron populations 1.23353 0.76760 1.05381 1.02326 1.86228 1.22952 1.26082 1.87558 1.18736 0.91170 0.85410 0.93264 1.19032 0.91731 0.94721 1.16428 1.24895 0.98671 0.92146 1.00974 1.86697 1.89744 1.41592 1.16614 0.93336 0.81375 0.84767 0.70467 1.18465 0.82860 0.92731 0.93406 1.85966 1.16532 1.32481 1.87844 1.22948 0.92375 0.82040 1.03437 1.22040 0.92222 0.99033 0.97958 0.86663 1.23630 1.04277 0.98103 0.91002 1.24187 0.82356 0.97417 0.96647 1.88075 1.36701 1.25403 1.76138 1.23287 1.04042 0.79939 1.01859 1.21540 0.87839 0.76084 0.76796 1.93183 1.94762 1.43507 1.85145 1.93189 1.95478 1.95784 1.32572 1.93172 1.59657 1.69098 1.93841 1.23328 1.04595 0.88576 0.98545 1.21441 0.95187 0.97843 1.12338 1.21136 0.93951 0.97942 0.92256 1.21465 1.01297 0.91927 1.12705 0.86957 0.91128 0.91898 0.90075 0.78285 1.20523 1.21539 0.90179 0.89784 0.85795 0.87408 0.86847 0.93859 0.90987 0.89223 0.85697 0.83149 0.82597 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 113.37 1.11 1.12 16 2 O -0.32 -2.57 7.34 -80.40 -0.59 -3.16 16 3 C 0.16 1.20 6.11 22.49 0.14 1.33 16 4 C -0.22 -1.65 4.44 -19.68 -0.09 -1.73 16 5 C -0.06 -0.37 2.64 71.23 0.19 -0.18 16 6 O -0.54 -3.69 11.84 -136.97 -1.62 -5.31 16 7 Si 0.80 4.88 31.75 68.60 2.18 7.06 16 8 C 0.17 0.87 6.66 22.49 0.15 1.02 16 9 O -0.31 -0.88 8.91 -92.30 -0.82 -1.70 16 10 C 0.07 -0.20 4.32 71.98 0.31 0.12 16 11 C -0.09 0.50 4.20 -10.26 -0.04 0.46 16 12 H 0.12 -0.75 8.14 -2.39 -0.02 -0.77 16 13 C -0.13 0.93 6.50 31.12 0.20 1.13 16 14 C 0.04 -0.08 0.84 -10.27 -0.01 -0.09 16 15 O -0.35 0.33 8.37 -148.98 -1.25 -0.91 16 16 C 0.00 -0.02 10.29 113.37 1.17 1.15 16 17 C 0.43 0.70 2.52 71.98 0.18 0.88 16 18 F -0.18 -0.37 15.40 44.97 0.69 0.32 16 19 F -0.19 -1.13 17.10 44.97 0.77 -0.36 16 20 F -0.18 -0.31 15.81 44.97 0.71 0.40 16 21 C -0.11 0.39 6.89 31.12 0.21 0.61 16 22 C -0.25 -0.39 9.04 22.38 0.20 -0.19 16 23 C -0.03 -0.02 10.04 22.24 0.22 0.20 16 24 C -0.26 -0.80 9.04 22.38 0.20 -0.60 16 25 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.07 -0.18 7.66 -2.38 -0.02 -0.20 16 27 H 0.06 -0.11 7.66 -2.39 -0.02 -0.13 16 28 H 0.08 0.37 6.83 -2.39 -0.02 0.35 16 29 H 0.37 0.75 9.05 -74.06 -0.67 0.08 16 30 H -0.28 -3.35 6.42 99.48 0.64 -2.71 16 31 H -0.29 -2.88 7.11 99.48 0.71 -2.17 16 32 H 0.08 -0.43 7.66 -2.39 -0.02 -0.45 16 33 H 0.08 -0.20 5.64 -2.39 -0.01 -0.21 16 34 H 0.12 -1.08 8.05 -2.39 -0.02 -1.10 16 35 H 0.11 -1.02 6.64 -2.39 -0.02 -1.03 16 36 H 0.11 -0.85 8.14 -2.39 -0.02 -0.87 16 37 H 0.04 -0.10 6.71 -2.39 -0.02 -0.12 16 38 H 0.07 -0.60 6.55 -2.39 -0.02 -0.61 16 39 H 0.09 -0.12 8.10 -2.39 -0.02 -0.14 16 40 H 0.12 -0.65 7.02 -2.38 -0.02 -0.66 16 41 H 0.15 -0.47 6.29 -2.91 -0.02 -0.49 16 42 H 0.16 -0.80 8.06 -2.91 -0.02 -0.83 16 43 H 0.15 -0.17 6.29 -2.91 -0.02 -0.19 16 Total: 0.00 -15.56 356.03 4.59 -10.97 By element: Atomic # 1 Polarization: -12.88 SS G_CDS: 0.37 Total: -12.51 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 4.15 Total: 5.21 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -4.28 Total: -11.09 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 2.17 Total: 0.36 kcal Atomic # 14 Polarization: 4.88 SS G_CDS: 2.18 Total: 7.06 kcal Total: -15.56 4.59 -10.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_215219_17321600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.720 kcal (2) G-P(sol) polarization free energy of solvation -15.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds