Wall clock time and date at job start Tue Mar 9 2021 14:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35897 * 116.99851 * 2 1 4 4 C 1.38751 * 120.02937 * 359.97438 * 3 2 1 5 5 C 1.38195 * 120.05254 * 179.97438 * 4 3 2 6 6 C 1.38151 * 120.11250 * 359.97180 * 5 4 3 7 7 C 1.38791 * 120.05306 * 0.02777 * 6 5 4 8 8 O 1.35901 * 120.02873 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99978 * 0.02562 * 8 7 6 10 10 C 1.50691 * 109.47337 * 179.97438 * 9 8 7 11 11 C 1.38241 * 120.00308 * 269.72798 * 10 9 8 12 12 C 1.38230 * 120.00060 * 179.76407 * 11 10 9 13 13 C 1.38232 * 120.00113 * 0.51198 * 12 11 10 14 14 Si 1.86800 * 120.00024 * 179.72500 * 13 12 11 15 15 C 1.86297 * 109.47203 * 270.01772 * 14 13 12 16 16 C 1.86304 * 109.47151 * 30.01504 * 14 13 12 17 17 C 1.86298 * 109.47365 * 150.01650 * 14 13 12 18 18 C 1.38235 * 119.99950 * 359.73883 * 13 12 11 19 19 C 1.38232 * 120.00143 * 0.02562 * 18 13 12 20 20 C 1.38613 * 119.94814 * 359.74660 * 7 6 5 21 21 C 1.50698 * 120.05797 * 180.25403 * 20 7 6 22 22 O 1.42899 * 109.47017 * 235.15669 * 21 20 7 23 23 Si 1.86301 * 109.47227 * 115.16062 * 21 20 7 24 24 H 1.48494 * 109.47364 * 65.61423 * 23 21 20 25 25 H 1.48498 * 109.47291 * 185.62003 * 23 21 20 26 26 H 1.48506 * 109.46819 * 305.61983 * 23 21 20 27 27 H 1.08997 * 109.47139 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46732 * 59.99927 * 1 2 3 29 29 H 1.09000 * 109.46698 * 300.00509 * 1 2 3 30 30 H 1.08002 * 119.97252 * 359.97438 * 4 3 2 31 31 H 1.08003 * 119.94531 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.97220 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47384 * 300.00055 * 9 8 7 34 34 H 1.09000 * 109.47070 * 59.99815 * 9 8 7 35 35 H 1.08002 * 119.99784 * 0.02562 * 11 10 9 36 36 H 1.08001 * 119.99824 * 180.22768 * 12 11 10 37 37 H 1.09007 * 109.47044 * 59.99744 * 15 14 13 38 38 H 1.09002 * 109.47316 * 179.97438 * 15 14 13 39 39 H 1.09006 * 109.47034 * 299.99990 * 15 14 13 40 40 H 1.09006 * 109.47098 * 60.00530 * 16 14 13 41 41 H 1.09002 * 109.47139 * 180.02562 * 16 14 13 42 42 H 1.09000 * 109.47297 * 299.99980 * 16 14 13 43 43 H 1.09006 * 109.46953 * 59.99961 * 17 14 13 44 44 H 1.09002 * 109.47264 * 179.97438 * 17 14 13 45 45 H 1.08996 * 109.47309 * 299.99789 * 17 14 13 46 46 H 1.08007 * 119.99774 * 179.97438 * 18 13 12 47 47 H 1.07992 * 120.00185 * 179.97438 * 19 18 13 48 48 H 1.08994 * 109.47107 * 355.16170 * 21 20 7 49 49 H 0.96698 * 114.00301 * 65.40459 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2909 2.3749 -0.0005 5 6 1.9178 3.6065 0.0000 6 6 3.2972 3.6821 0.0017 7 6 4.0570 2.5206 0.0022 8 8 5.4139 2.5956 0.0044 9 6 5.9914 3.9027 0.0065 10 6 7.4940 3.7880 0.0094 11 6 8.1813 3.7401 1.2078 12 6 9.5593 3.6299 1.2104 13 6 10.2507 3.5784 0.0146 14 14 12.1134 3.4373 0.0181 15 6 12.8653 5.1418 0.0210 16 6 12.6634 2.5135 1.5396 17 6 12.6693 2.5160 -1.5027 18 6 9.5639 3.6315 -1.1839 19 6 8.1855 3.7367 -1.1865 20 6 3.4307 1.2841 0.0064 21 6 4.2532 0.0214 0.0128 22 8 3.8698 -0.8024 -1.0901 23 14 3.9642 -0.9000 1.6060 24 1 2.5548 -1.3644 1.6606 25 1 4.8743 -2.0715 1.6725 26 1 4.2331 0.0016 2.7550 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2124 2.3184 -0.0014 31 1 1.3283 4.5115 -0.0008 32 1 3.7847 4.6458 0.0025 33 1 5.6697 4.4436 -0.8834 34 1 5.6669 4.4418 0.8966 35 1 7.6414 3.7844 2.1421 36 1 10.0959 3.5888 2.1467 37 1 12.5400 5.6809 0.9108 38 1 13.9522 5.0595 0.0235 39 1 12.5435 5.6824 -0.8692 40 1 12.2235 1.5161 1.5379 41 1 13.7503 2.4315 1.5418 42 1 12.3382 3.0525 2.4294 43 1 12.3475 3.0566 -2.3929 44 1 13.7563 2.4341 -1.5009 45 1 12.2295 1.5187 -1.5044 46 1 10.1042 3.5917 -2.1182 47 1 7.6490 3.7787 -2.1227 48 1 5.3096 0.2755 -0.0734 49 1 4.0696 -0.4194 -1.9553 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_215219_9276060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:51:25 Heat of formation + Delta-G solvation = -102.460219 kcal Electronic energy + Delta-G solvation = -27752.807202 eV Core-core repulsion = 23961.794098 eV Total energy + Delta-G solvation = -3791.013104 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69179 -40.44451 -39.54267 -37.60958 -37.09517 -33.30961 -32.20776 -31.90554 -30.33086 -29.58845 -28.45616 -28.44386 -28.42442 -27.20571 -26.42858 -23.50405 -23.09097 -22.61908 -21.79435 -19.60813 -18.40368 -17.94879 -17.42582 -17.20252 -16.96907 -16.69729 -16.49155 -16.04020 -15.80220 -15.48135 -15.43752 -14.98784 -14.39431 -14.35919 -14.23604 -14.17224 -14.14300 -13.94666 -13.87183 -13.53984 -13.39782 -13.27907 -13.27086 -13.19537 -13.11679 -12.93423 -12.50056 -12.46344 -12.25906 -11.98693 -11.96581 -11.76775 -11.51380 -11.07897 -11.05827 -10.92042 -10.85907 -10.76018 -9.80149 -9.71297 -9.26683 -9.08080 0.14112 0.28886 0.45770 0.52710 1.48926 1.68152 1.73728 1.80803 1.83146 1.85765 2.06990 2.29348 2.52421 2.64525 2.74258 3.04829 3.65384 3.73866 3.77227 3.91096 3.99181 4.05956 4.10954 4.18602 4.20326 4.22920 4.28350 4.35264 4.41991 4.48849 4.62082 4.64912 4.65509 4.68685 4.70043 4.73666 4.74509 4.74880 4.75494 4.92976 4.97887 5.13200 5.19580 5.30756 5.38027 5.44078 5.46644 5.48887 5.50942 5.51987 5.59915 5.60427 6.08868 6.32539 6.45378 6.83129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.293 6.293 3 C 0.181 3.819 4 C -0.247 4.247 5 C -0.035 4.035 6 C -0.248 4.248 7 C 0.179 3.821 8 O -0.303 6.303 9 C 0.101 3.899 10 C -0.090 4.090 11 C -0.106 4.106 12 C -0.091 4.091 13 C -0.360 4.360 14 Si 1.059 2.941 15 C -0.449 4.449 16 C -0.450 4.450 17 C -0.450 4.450 18 C -0.092 4.092 19 C -0.106 4.106 20 C -0.194 4.194 21 C -0.067 4.067 22 O -0.532 6.532 23 Si 1.007 2.993 24 H -0.238 1.238 25 H -0.257 1.257 26 H -0.258 1.258 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.077 0.923 49 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 3.207 -0.258 3.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.205 6.205 3 C 0.134 3.866 4 C -0.266 4.266 5 C -0.053 4.053 6 C -0.267 4.267 7 C 0.132 3.868 8 O -0.217 6.217 9 C 0.026 3.974 10 C -0.090 4.090 11 C -0.124 4.124 12 C -0.109 4.109 13 C -0.402 4.402 14 Si 1.251 2.749 15 C -0.556 4.556 16 C -0.558 4.558 17 C -0.558 4.558 18 C -0.109 4.109 19 C -0.124 4.124 20 C -0.196 4.196 21 C -0.175 4.175 22 O -0.336 6.336 23 Si 0.826 3.174 24 H -0.161 1.161 25 H -0.181 1.181 26 H -0.181 1.181 27 H 0.121 0.879 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.096 0.904 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.192 2.027 0.981 2.261 hybrid contribution -0.358 1.334 -1.017 1.715 sum -0.166 3.361 -0.035 3.365 Atomic orbital electron populations 1.23144 0.78280 1.04348 1.01426 1.86283 1.21209 1.25598 1.87363 1.18448 0.90735 0.84815 0.92563 1.21186 1.00363 0.92063 1.12992 1.20750 0.93706 0.97270 0.93549 1.21144 0.94938 0.97356 1.13250 1.18354 0.82326 0.92647 0.93426 1.86122 1.16862 1.30677 1.87992 1.21673 0.90050 0.83153 1.02489 1.19444 0.92825 1.02624 0.94072 1.21160 0.94883 0.99157 0.97215 1.21082 0.93758 0.97836 0.98263 1.27481 1.17275 1.01262 0.94175 0.78189 0.61900 0.67418 0.67381 1.26125 1.06981 1.17932 1.04609 1.26138 1.05983 1.08627 1.15015 1.26136 1.06015 1.08601 1.15003 1.21080 0.93778 0.97861 0.98227 1.21142 0.94833 0.99194 0.97201 1.18784 0.91286 0.94173 1.15339 1.24837 0.98874 0.92875 1.00951 1.86734 1.85893 1.45354 1.15668 0.84549 0.81895 0.78442 0.72521 1.16136 1.18131 1.18143 0.87920 0.92389 0.92540 0.85010 0.85263 0.85150 0.90840 0.90810 0.86077 0.85863 0.91172 0.91002 0.91171 0.90999 0.90933 0.91174 0.91179 0.90931 0.91003 0.85882 0.86135 0.90440 0.79100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.29 -0.95 7.35 -31.66 -0.23 -1.18 16 3 C 0.18 0.57 6.11 -39.24 -0.24 0.33 16 4 C -0.25 -0.35 9.04 -39.41 -0.36 -0.71 16 5 C -0.03 -0.02 10.03 -39.63 -0.40 -0.42 16 6 C -0.25 -0.29 9.04 -39.41 -0.36 -0.65 16 7 C 0.18 0.48 6.66 -39.24 -0.26 0.22 16 8 O -0.30 -0.75 8.89 -19.43 -0.17 -0.92 16 9 C 0.10 0.03 4.87 36.00 0.18 0.20 16 10 C -0.09 -0.10 5.51 -104.62 -0.58 -0.68 16 11 C -0.11 -0.10 9.70 -39.58 -0.38 -0.48 16 12 C -0.09 -0.02 9.29 -39.59 -0.37 -0.39 16 13 C -0.36 0.10 4.59 -39.58 -0.18 -0.08 16 14 Si 1.06 -2.72 12.32 -169.99 -2.09 -4.82 16 15 C -0.45 0.74 8.65 101.05 0.87 1.62 16 16 C -0.45 0.79 8.53 101.05 0.86 1.66 16 17 C -0.45 0.80 8.53 101.05 0.86 1.66 16 18 C -0.09 -0.02 9.29 -39.58 -0.37 -0.39 16 19 C -0.11 -0.09 9.70 -39.58 -0.38 -0.47 16 20 C -0.19 -0.67 4.49 -104.33 -0.47 -1.14 16 21 C -0.07 -0.23 2.63 36.00 0.09 -0.13 16 22 O -0.53 -1.85 11.83 -47.47 -0.56 -2.42 16 23 Si 1.01 3.69 26.99 -169.99 -4.59 -0.90 16 24 H -0.24 -1.05 6.46 56.52 0.36 -0.68 16 25 H -0.26 -1.05 7.11 56.52 0.40 -0.65 16 26 H -0.26 -0.96 7.11 56.52 0.40 -0.56 16 27 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 28 H 0.06 -0.09 7.66 -51.93 -0.40 -0.49 16 29 H 0.06 -0.08 7.66 -51.93 -0.40 -0.48 16 30 H 0.13 -0.08 6.29 -52.49 -0.33 -0.41 16 31 H 0.13 -0.21 8.06 -52.48 -0.42 -0.63 16 32 H 0.13 -0.10 6.29 -52.49 -0.33 -0.44 16 33 H 0.07 -0.07 7.60 -51.93 -0.39 -0.47 16 34 H 0.07 -0.07 7.60 -51.93 -0.39 -0.46 16 35 H 0.12 -0.04 8.06 -52.49 -0.42 -0.47 16 36 H 0.12 -0.20 7.43 -52.49 -0.39 -0.59 16 37 H 0.07 -0.10 7.96 -51.92 -0.41 -0.51 16 38 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 39 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 40 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 41 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 42 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 43 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 44 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 45 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 46 H 0.12 -0.21 7.43 -52.48 -0.39 -0.60 16 47 H 0.12 -0.06 8.06 -52.49 -0.42 -0.48 16 48 H 0.08 0.22 6.83 -51.93 -0.35 -0.13 16 49 H 0.36 0.20 9.11 45.56 0.42 0.62 16 LS Contribution 401.87 15.07 6.06 6.06 Total: 0.00 -6.07 401.87 -9.26 -15.33 By element: Atomic # 1 Polarization: -5.09 SS G_CDS: -7.18 Total: -12.28 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.48 Total: 1.13 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.97 Total: -4.52 kcal Atomic # 14 Polarization: 0.97 SS G_CDS: -6.68 Total: -5.72 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -6.07 -9.26 -15.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_215219_9276060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.135 kcal (2) G-P(sol) polarization free energy of solvation -6.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds