Wall clock time and date at job start Tue Mar 9 2021 14:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35897 * 116.99851 * 2 1 4 4 C 1.38751 * 120.02937 * 359.97438 * 3 2 1 5 5 C 1.38195 * 120.05254 * 179.97438 * 4 3 2 6 6 C 1.38151 * 120.11250 * 359.97180 * 5 4 3 7 7 C 1.38791 * 120.05306 * 0.02777 * 6 5 4 8 8 O 1.35901 * 120.02873 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99978 * 0.02562 * 8 7 6 10 10 C 1.50691 * 109.47337 * 179.97438 * 9 8 7 11 11 C 1.38241 * 120.00308 * 269.72798 * 10 9 8 12 12 C 1.38230 * 120.00060 * 179.76407 * 11 10 9 13 13 C 1.38232 * 120.00113 * 0.51198 * 12 11 10 14 14 Si 1.86800 * 120.00024 * 179.72500 * 13 12 11 15 15 C 1.86297 * 109.47203 * 270.01772 * 14 13 12 16 16 C 1.86304 * 109.47151 * 30.01504 * 14 13 12 17 17 C 1.86298 * 109.47365 * 150.01650 * 14 13 12 18 18 C 1.38235 * 119.99950 * 359.73883 * 13 12 11 19 19 C 1.38232 * 120.00143 * 0.02562 * 18 13 12 20 20 C 1.38613 * 119.94814 * 359.74660 * 7 6 5 21 21 C 1.50698 * 120.05797 * 180.25403 * 20 7 6 22 22 O 1.42899 * 109.47017 * 235.15669 * 21 20 7 23 23 Si 1.86301 * 109.47227 * 115.16062 * 21 20 7 24 24 H 1.48494 * 109.47364 * 65.61423 * 23 21 20 25 25 H 1.48498 * 109.47291 * 185.62003 * 23 21 20 26 26 H 1.48506 * 109.46819 * 305.61983 * 23 21 20 27 27 H 1.08997 * 109.47139 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46732 * 59.99927 * 1 2 3 29 29 H 1.09000 * 109.46698 * 300.00509 * 1 2 3 30 30 H 1.08002 * 119.97252 * 359.97438 * 4 3 2 31 31 H 1.08003 * 119.94531 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.97220 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47384 * 300.00055 * 9 8 7 34 34 H 1.09000 * 109.47070 * 59.99815 * 9 8 7 35 35 H 1.08002 * 119.99784 * 0.02562 * 11 10 9 36 36 H 1.08001 * 119.99824 * 180.22768 * 12 11 10 37 37 H 1.09007 * 109.47044 * 59.99744 * 15 14 13 38 38 H 1.09002 * 109.47316 * 179.97438 * 15 14 13 39 39 H 1.09006 * 109.47034 * 299.99990 * 15 14 13 40 40 H 1.09006 * 109.47098 * 60.00530 * 16 14 13 41 41 H 1.09002 * 109.47139 * 180.02562 * 16 14 13 42 42 H 1.09000 * 109.47297 * 299.99980 * 16 14 13 43 43 H 1.09006 * 109.46953 * 59.99961 * 17 14 13 44 44 H 1.09002 * 109.47264 * 179.97438 * 17 14 13 45 45 H 1.08996 * 109.47309 * 299.99789 * 17 14 13 46 46 H 1.08007 * 119.99774 * 179.97438 * 18 13 12 47 47 H 1.07992 * 120.00185 * 179.97438 * 19 18 13 48 48 H 1.08994 * 109.47107 * 355.16170 * 21 20 7 49 49 H 0.96698 * 114.00301 * 65.40459 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2909 2.3749 -0.0005 5 6 1.9178 3.6065 0.0000 6 6 3.2972 3.6821 0.0017 7 6 4.0570 2.5206 0.0022 8 8 5.4139 2.5956 0.0044 9 6 5.9914 3.9027 0.0065 10 6 7.4940 3.7880 0.0094 11 6 8.1813 3.7401 1.2078 12 6 9.5593 3.6299 1.2104 13 6 10.2507 3.5784 0.0146 14 14 12.1134 3.4373 0.0181 15 6 12.8653 5.1418 0.0210 16 6 12.6634 2.5135 1.5396 17 6 12.6693 2.5160 -1.5027 18 6 9.5639 3.6315 -1.1839 19 6 8.1855 3.7367 -1.1865 20 6 3.4307 1.2841 0.0064 21 6 4.2532 0.0214 0.0128 22 8 3.8698 -0.8024 -1.0901 23 14 3.9642 -0.9000 1.6060 24 1 2.5548 -1.3644 1.6606 25 1 4.8743 -2.0715 1.6725 26 1 4.2331 0.0016 2.7550 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2124 2.3184 -0.0014 31 1 1.3283 4.5115 -0.0008 32 1 3.7847 4.6458 0.0025 33 1 5.6697 4.4436 -0.8834 34 1 5.6669 4.4418 0.8966 35 1 7.6414 3.7844 2.1421 36 1 10.0959 3.5888 2.1467 37 1 12.5400 5.6809 0.9108 38 1 13.9522 5.0595 0.0235 39 1 12.5435 5.6824 -0.8692 40 1 12.2235 1.5161 1.5379 41 1 13.7503 2.4315 1.5418 42 1 12.3382 3.0525 2.4294 43 1 12.3475 3.0566 -2.3929 44 1 13.7563 2.4341 -1.5009 45 1 12.2295 1.5187 -1.5044 46 1 10.1042 3.5917 -2.1182 47 1 7.6490 3.7787 -2.1227 48 1 5.3096 0.2755 -0.0734 49 1 4.0696 -0.4194 -1.9553 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_215219_9276060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:51:24 Heat of formation + Delta-G solvation = -92.581178 kcal Electronic energy + Delta-G solvation = -27752.378815 eV Core-core repulsion = 23961.794098 eV Total energy + Delta-G solvation = -3790.584717 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77163 -40.47400 -39.56696 -37.76908 -37.21294 -33.32544 -32.28147 -31.87608 -30.39112 -29.43673 -28.41953 -28.29534 -28.26853 -27.20978 -26.56586 -23.48051 -23.13813 -22.71670 -21.80795 -19.67699 -18.56107 -18.00316 -17.47407 -17.27620 -17.00282 -16.76134 -16.58439 -16.04731 -15.98218 -15.52854 -15.46390 -15.06772 -14.51594 -14.32786 -14.25140 -14.10222 -14.04199 -13.86686 -13.73660 -13.49169 -13.42847 -13.19069 -13.12673 -13.11623 -12.96749 -12.93752 -12.51900 -12.43546 -12.32713 -12.28922 -12.04685 -11.87384 -11.60061 -11.28988 -10.97632 -10.91064 -10.76926 -10.75899 -9.80109 -9.68690 -9.39465 -9.15604 0.15516 0.19272 0.36785 0.52750 1.21348 1.43753 1.51037 1.82901 1.87556 1.98865 2.02280 2.15508 2.62105 2.65288 2.67370 3.05178 3.59724 3.72171 3.79078 3.82464 4.00244 4.06658 4.09053 4.12999 4.23966 4.25121 4.38216 4.39205 4.41627 4.48644 4.54054 4.72029 4.72573 4.81513 4.84647 4.84842 4.88703 4.89230 4.89708 4.90710 5.00803 5.16605 5.17491 5.23135 5.39149 5.42095 5.47287 5.57189 5.59248 5.60490 5.67925 5.70793 6.12608 6.27061 6.39553 6.72218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.316 6.316 3 C 0.166 3.834 4 C -0.251 4.251 5 C -0.035 4.035 6 C -0.251 4.251 7 C 0.168 3.832 8 O -0.317 6.317 9 C 0.099 3.901 10 C -0.103 4.103 11 C -0.122 4.122 12 C -0.104 4.104 13 C -0.373 4.373 14 Si 1.126 2.874 15 C -0.461 4.461 16 C -0.463 4.463 17 C -0.463 4.463 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.215 4.215 21 C -0.063 4.063 22 O -0.545 6.545 23 Si 1.020 2.980 24 H -0.250 1.250 25 H -0.267 1.267 26 H -0.261 1.261 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.149 0.851 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.139 0.861 47 H 0.128 0.872 48 H 0.077 0.923 49 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 4.278 -0.465 4.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.228 6.228 3 C 0.120 3.880 4 C -0.270 4.270 5 C -0.053 4.053 6 C -0.269 4.269 7 C 0.122 3.878 8 O -0.231 6.231 9 C 0.025 3.975 10 C -0.103 4.103 11 C -0.140 4.140 12 C -0.122 4.122 13 C -0.412 4.412 14 Si 1.313 2.687 15 C -0.568 4.568 16 C -0.570 4.570 17 C -0.570 4.570 18 C -0.122 4.122 19 C -0.138 4.138 20 C -0.216 4.216 21 C -0.172 4.172 22 O -0.351 6.351 23 Si 0.841 3.159 24 H -0.174 1.174 25 H -0.191 1.191 26 H -0.185 1.185 27 H 0.129 0.871 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.167 0.833 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.145 0.855 36 H 0.156 0.844 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.157 0.843 47 H 0.146 0.854 48 H 0.095 0.905 49 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.089 3.104 0.773 3.200 hybrid contribution -0.343 1.005 -0.957 1.429 sum -0.254 4.109 -0.184 4.121 Atomic orbital electron populations 1.23366 0.76754 1.05334 1.02484 1.86237 1.22954 1.26108 1.87533 1.18643 0.90859 0.85368 0.93143 1.21457 1.01319 0.91787 1.12442 1.21110 0.93779 0.98017 0.92376 1.21412 0.95300 0.97641 1.12576 1.18494 0.82526 0.92960 0.93783 1.86096 1.16976 1.31982 1.88077 1.21795 0.89585 0.82535 1.03539 1.19617 0.93369 1.03044 0.94304 1.21392 0.95504 0.99547 0.97579 1.21387 0.93801 0.97743 0.99263 1.28034 1.18900 1.00432 0.93859 0.77183 0.59470 0.66004 0.66033 1.26267 1.07373 1.18666 1.04463 1.26293 1.06251 1.08633 1.15850 1.26285 1.06281 1.08603 1.15812 1.21391 0.93840 0.97718 0.99208 1.21374 0.95424 0.99470 0.97553 1.18888 0.91747 0.94361 1.16643 1.24719 0.98916 0.93000 1.00577 1.86683 1.86060 1.45883 1.16427 0.84359 0.80740 0.77854 0.72912 1.17376 1.19144 1.18543 0.87094 0.91243 0.91496 0.83213 0.82662 0.83308 0.89668 0.89771 0.85454 0.84356 0.91348 0.90664 0.91319 0.91444 0.90650 0.90903 0.90867 0.90651 0.91436 0.84318 0.85392 0.90521 0.77824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.32 -2.28 7.35 -80.69 -0.59 -2.87 16 3 C 0.17 1.12 6.11 22.49 0.14 1.26 16 4 C -0.25 -0.56 9.04 22.38 0.20 -0.36 16 5 C -0.03 -0.01 10.03 22.24 0.22 0.21 16 6 C -0.25 -0.43 9.04 22.38 0.20 -0.23 16 7 C 0.17 0.97 6.66 22.49 0.15 1.12 16 8 O -0.32 -1.81 8.89 -92.43 -0.82 -2.63 16 9 C 0.10 0.08 4.87 71.23 0.35 0.42 16 10 C -0.10 -0.29 5.51 -19.87 -0.11 -0.40 16 11 C -0.12 -0.31 9.70 22.27 0.22 -0.09 16 12 C -0.10 -0.08 9.29 22.27 0.21 0.12 16 13 C -0.37 0.17 4.59 22.27 0.10 0.27 16 14 Si 1.13 -6.20 12.32 68.60 0.85 -5.36 16 15 C -0.46 1.74 8.65 113.37 0.98 2.72 16 16 C -0.46 1.77 8.53 113.37 0.97 2.73 16 17 C -0.46 1.82 8.53 113.37 0.97 2.79 16 18 C -0.10 -0.06 9.29 22.27 0.21 0.14 16 19 C -0.12 -0.26 9.70 22.27 0.22 -0.05 16 20 C -0.21 -1.68 4.49 -19.67 -0.09 -1.77 16 21 C -0.06 -0.52 2.63 71.24 0.19 -0.33 16 22 O -0.54 -4.51 11.83 -137.27 -1.62 -6.13 16 23 Si 1.02 9.07 26.99 68.60 1.85 10.92 16 24 H -0.25 -2.64 6.46 99.48 0.64 -2.00 16 25 H -0.27 -2.63 7.11 99.48 0.71 -1.92 16 26 H -0.26 -2.34 7.11 99.48 0.71 -1.64 16 27 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.07 -0.24 7.66 -2.39 -0.02 -0.26 16 29 H 0.07 -0.22 7.66 -2.39 -0.02 -0.24 16 30 H 0.15 -0.35 6.29 -2.91 -0.02 -0.37 16 31 H 0.16 -0.85 8.06 -2.91 -0.02 -0.87 16 32 H 0.15 -0.42 6.29 -2.91 -0.02 -0.44 16 33 H 0.09 -0.18 7.60 -2.39 -0.02 -0.20 16 34 H 0.08 -0.16 7.60 -2.39 -0.02 -0.18 16 35 H 0.13 0.01 8.06 -2.91 -0.02 -0.01 16 36 H 0.14 -0.45 7.43 -2.91 -0.02 -0.47 16 37 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 38 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 39 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 40 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 41 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 42 H 0.07 -0.31 7.69 -2.39 -0.02 -0.33 16 43 H 0.07 -0.33 7.69 -2.38 -0.02 -0.34 16 44 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 45 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 46 H 0.14 -0.49 7.43 -2.91 -0.02 -0.51 16 47 H 0.13 -0.05 8.06 -2.91 -0.02 -0.08 16 48 H 0.08 0.58 6.83 -2.39 -0.02 0.56 16 49 H 0.37 0.89 9.11 -74.06 -0.67 0.22 16 Total: 0.00 -14.60 401.87 6.84 -7.76 By element: Atomic # 1 Polarization: -12.31 SS G_CDS: 0.95 Total: -11.36 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 6.23 Total: 9.68 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -3.04 Total: -11.64 kcal Atomic # 14 Polarization: 2.87 SS G_CDS: 2.70 Total: 5.56 kcal Total: -14.60 6.84 -7.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_215219_9276060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.819 kcal (2) G-P(sol) polarization free energy of solvation -14.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds