Wall clock time and date at job start Tue Mar 9 2021 14:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36007 * 117.00173 * 2 1 4 4 C 1.39149 * 120.06337 * 180.02562 * 3 2 1 5 5 O 1.35992 * 120.06965 * 0.02562 * 4 3 2 6 6 C 1.42901 * 116.99948 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47126 * 180.02562 * 6 5 4 8 8 H 1.09002 * 112.84206 * 316.19847 * 7 6 5 9 9 C 1.53778 * 113.61403 * 87.49966 * 7 6 5 10 10 C 1.53781 * 87.07975 * 139.98419 * 9 7 6 11 11 H 1.08994 * 113.69265 * 89.12563 * 10 9 7 12 12 N 1.46500 * 113.61474 * 220.01991 * 10 9 7 13 13 C 1.34773 * 120.00025 * 252.49388 * 12 10 9 14 14 O 1.21508 * 120.00018 * 359.97438 * 13 12 10 15 15 O 1.34638 * 119.99903 * 180.02562 * 13 12 10 16 16 C 1.45209 * 116.99944 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47139 * 59.99407 * 16 15 13 18 18 C 1.52994 * 109.47079 * 180.02562 * 16 15 13 19 19 C 1.53005 * 109.46460 * 299.99755 * 16 15 13 20 20 C 1.53776 * 113.61515 * 185.00160 * 7 6 5 21 21 C 1.38566 * 119.86090 * 180.29377 * 4 3 2 22 22 C 1.38318 * 119.98993 * 359.44760 * 21 4 3 23 23 Br 1.89099 * 119.93417 * 180.27600 * 22 21 4 24 24 C 1.38326 * 120.12641 * 0.54695 * 22 21 4 25 25 C 1.50702 * 119.93358 * 179.74513 * 24 22 21 26 26 O 1.42894 * 109.47117 * 163.64782 * 25 24 22 27 27 Si 1.86298 * 109.47331 * 283.65430 * 25 24 22 28 28 C 1.38244 * 120.13879 * 359.73118 * 24 22 21 29 29 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47378 * 300.00000 * 1 2 3 31 31 H 1.08993 * 109.47285 * 60.00079 * 1 2 3 32 32 H 1.08996 * 109.47183 * 60.00761 * 6 5 4 33 33 H 1.09003 * 109.47126 * 300.00340 * 6 5 4 34 34 H 1.08996 * 113.61815 * 25.43557 * 9 7 6 35 35 H 1.09003 * 113.61775 * 254.52970 * 9 7 6 36 36 H 0.97001 * 119.99830 * 72.49966 * 12 10 9 37 37 H 1.09007 * 109.47178 * 60.00209 * 17 16 15 38 38 H 1.09004 * 109.47272 * 179.97438 * 17 16 15 39 39 H 1.09004 * 109.47388 * 300.00339 * 17 16 15 40 40 H 1.08997 * 109.47632 * 59.99502 * 18 16 15 41 41 H 1.09004 * 109.47137 * 180.02562 * 18 16 15 42 42 H 1.09007 * 109.46619 * 299.99412 * 18 16 15 43 43 H 1.09001 * 109.47573 * 60.00574 * 19 16 15 44 44 H 1.09004 * 109.46269 * 179.97438 * 19 16 15 45 45 H 1.08997 * 109.47175 * 299.99839 * 19 16 15 46 46 H 1.09000 * 113.61750 * 105.46549 * 20 7 6 47 47 H 1.09002 * 113.69376 * 334.57304 * 20 7 6 48 48 H 1.08005 * 120.00280 * 179.69306 * 21 4 3 49 49 H 1.09006 * 109.46882 * 43.65237 * 25 24 22 50 50 H 0.96708 * 113.99987 * 180.02562 * 26 25 24 51 51 H 1.48505 * 109.99886 * 305.31689 * 27 25 24 52 52 H 1.48496 * 110.00230 * 66.63880 * 27 25 24 53 53 H 1.07998 * 119.99963 * 179.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4360 1.2861 -0.0005 5 8 4.1792 0.1473 -0.0016 6 6 5.6001 0.2999 -0.0015 7 6 6.2613 -1.0799 -0.0034 8 1 5.7904 -1.7757 0.6910 9 6 6.4719 -1.6601 -1.4119 10 6 7.8352 -2.1678 -0.9134 11 1 7.7963 -3.1621 -0.4686 12 7 8.9100 -2.0270 -1.8989 13 6 9.3995 -3.1169 -2.5224 14 8 8.9497 -4.2164 -2.2669 15 8 10.3876 -2.9876 -3.4278 16 6 10.8654 -4.2042 -4.0604 17 6 9.7116 -4.8791 -4.8046 18 6 11.9799 -3.8603 -5.0505 19 6 11.4086 -5.1550 -2.9918 20 6 7.7933 -1.0290 0.1193 21 6 4.0607 2.5229 0.0056 22 6 3.3032 3.6802 0.0007 23 35 4.1574 5.3672 0.0013 24 6 1.9219 3.6058 0.0011 25 6 1.1008 4.8695 0.0016 26 8 -0.2428 4.5646 -0.3773 27 14 1.1106 5.6159 1.7085 28 6 1.2931 2.3747 0.0008 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 5.9065 0.8487 0.8890 33 1 5.9064 0.8505 -0.8910 34 1 6.5468 -0.9007 -2.1903 35 1 5.7742 -2.4587 -1.6641 36 1 9.2693 -1.1493 -2.1025 37 1 9.3245 -4.2016 -5.5658 38 1 10.0704 -5.7921 -5.2799 39 1 8.9178 -5.1241 -4.0989 40 1 12.8018 -3.3797 -4.5199 41 1 12.3383 -4.7734 -5.5257 42 1 11.5932 -3.1826 -5.8117 43 1 10.6149 -5.4002 -2.2861 44 1 11.7669 -6.0685 -3.4667 45 1 12.2306 -4.6742 -2.4616 46 1 8.1623 -1.3181 1.1034 47 1 8.2308 -0.0975 -0.2399 48 1 5.1391 2.5833 0.0102 49 1 1.5261 5.5795 -0.7078 50 1 -0.8295 5.3331 -0.3989 51 1 0.6532 4.6132 2.7039 52 1 2.4777 6.0839 2.0504 53 1 0.2145 2.3193 0.0015 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2162974_15734236.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:59:03 Heat of formation + Delta-G solvation = -125.899763 kcal Electronic energy + Delta-G solvation = -35336.227011 eV Core-core repulsion = 30416.097721 eV Total energy + Delta-G solvation = -4920.129290 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 444.107 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.02457 -41.85417 -40.58435 -39.43879 -38.99383 -37.93056 -37.15987 -35.44665 -34.29370 -33.15748 -32.21828 -30.48568 -29.41468 -28.50587 -28.40372 -28.33179 -26.80253 -26.24240 -24.98095 -23.55263 -22.62654 -22.18666 -21.45013 -20.60427 -19.66081 -19.13792 -18.76303 -18.34068 -17.76257 -17.40416 -17.34972 -17.20964 -16.73239 -16.55245 -16.28443 -16.15228 -16.02150 -15.85326 -15.59138 -15.40102 -15.19783 -14.61893 -14.51875 -14.33513 -14.19152 -13.84789 -13.72394 -13.51533 -13.40685 -13.33151 -13.16503 -12.97801 -12.94938 -12.89978 -12.75319 -12.63743 -12.56986 -12.51210 -12.39676 -12.29792 -12.08652 -11.99014 -11.76988 -11.43251 -11.42977 -11.35924 -11.21410 -11.14350 -10.52440 -10.19667 -9.85919 -8.96244 -5.06440 -0.20489 -0.08591 0.34122 1.13027 1.27057 1.64499 1.69348 1.95542 2.00206 2.11577 2.27496 3.08896 3.11706 3.34432 3.39960 3.45708 3.59435 3.70174 3.71081 3.76456 3.77929 3.82043 3.91162 4.05489 4.14024 4.19798 4.24051 4.27574 4.28213 4.33205 4.41187 4.47837 4.56355 4.57779 4.60472 4.62524 4.65846 4.68405 4.72994 4.74664 4.76661 4.82857 4.84451 4.91114 4.98831 5.00974 5.04457 5.15489 5.23569 5.23937 5.28798 5.45085 5.56249 5.88664 6.34007 6.36742 6.84949 7.30518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.321 6.321 3 C 0.102 3.898 4 C 0.096 3.904 5 O -0.312 6.312 6 C 0.061 3.939 7 C -0.101 4.101 8 H 0.102 0.898 9 C -0.146 4.146 10 C 0.136 3.864 11 H 0.104 0.896 12 N -0.689 5.689 13 C 0.642 3.358 14 O -0.596 6.596 15 O -0.369 6.369 16 C 0.127 3.873 17 C -0.180 4.180 18 C -0.137 4.137 19 C -0.180 4.180 20 C -0.117 4.117 21 C -0.141 4.141 22 C -0.107 4.107 23 Br -0.027 7.027 24 C -0.062 4.062 25 C -0.070 4.070 26 O -0.558 6.558 27 Si 0.751 3.249 28 C -0.154 4.154 29 H 0.120 0.880 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.418 0.582 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.095 0.905 47 H 0.114 0.886 48 H 0.167 0.833 49 H 0.097 0.903 50 H 0.408 0.592 51 H -0.306 1.306 52 H -0.253 1.253 53 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.258 5.771 -0.608 5.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.235 6.235 3 C 0.055 3.945 4 C 0.049 3.951 5 O -0.226 6.226 6 C -0.013 4.013 7 C -0.120 4.120 8 H 0.120 0.880 9 C -0.185 4.185 10 C 0.032 3.968 11 H 0.122 0.878 12 N -0.348 5.348 13 C 0.396 3.604 14 O -0.486 6.486 15 O -0.284 6.284 16 C 0.090 3.910 17 C -0.237 4.237 18 C -0.194 4.194 19 C -0.237 4.237 20 C -0.155 4.155 21 C -0.161 4.161 22 C -0.186 4.186 23 Br 0.059 6.941 24 C -0.064 4.064 25 C -0.178 4.178 26 O -0.369 6.369 27 Si 0.653 3.347 28 C -0.173 4.173 29 H 0.138 0.862 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.256 0.744 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.082 0.918 46 H 0.113 0.887 47 H 0.132 0.868 48 H 0.185 0.815 49 H 0.115 0.885 50 H 0.261 0.739 51 H -0.234 1.234 52 H -0.177 1.177 53 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.515 4.787 0.204 4.819 hybrid contribution -0.076 -0.526 -0.448 0.695 sum 0.439 4.261 -0.243 4.290 Atomic orbital electron populations 1.23390 0.76244 1.05784 1.02327 1.86175 1.23409 1.25516 1.88393 1.18650 0.89714 0.85911 1.00180 1.18263 0.88429 0.86369 1.01990 1.86196 1.20200 1.27691 1.88563 1.23122 0.76680 0.98586 1.02932 1.22257 0.95773 0.95645 0.98308 0.87985 1.23607 0.96561 1.01090 0.97255 1.22529 0.84732 1.00778 0.88745 0.87768 1.44748 1.39220 1.08152 1.42669 1.18445 0.78623 0.84855 0.78466 1.90904 1.63554 1.26150 1.68041 1.86314 1.49865 1.39612 1.52598 1.22357 0.94707 0.81299 0.92590 1.22472 0.98771 1.01816 1.00677 1.21889 0.96038 1.03952 0.97552 1.22474 1.01727 1.00081 0.99420 1.23343 0.93302 0.98903 0.99912 1.21103 1.01501 0.88915 1.04585 1.21284 0.93597 0.92486 1.11282 1.96717 1.78804 1.21110 1.97488 1.19230 0.91607 0.95449 1.00118 1.24809 0.85108 0.96015 1.11911 1.86318 1.18605 1.39905 1.92031 0.95151 0.83881 0.83362 0.72284 1.21008 1.01608 0.89604 1.05105 0.86153 0.91801 0.91509 0.90098 0.90265 0.88697 0.92016 0.74435 0.92013 0.89435 0.91918 0.91079 0.88312 0.91210 0.91861 0.89469 0.91835 0.88679 0.86795 0.81542 0.88487 0.73949 1.23426 1.17739 0.82053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 113.37 1.11 1.12 16 2 O -0.32 -2.75 10.28 -79.74 -0.82 -3.57 16 3 C 0.10 0.87 6.70 22.57 0.15 1.02 16 4 C 0.10 0.69 6.70 22.57 0.15 0.84 16 5 O -0.31 -1.99 9.92 -79.58 -0.79 -2.78 16 6 C 0.06 -0.11 4.58 71.98 0.33 0.22 16 7 C -0.10 0.27 4.01 -10.27 -0.04 0.23 16 8 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 9 C -0.15 0.06 7.43 31.12 0.23 0.29 16 10 C 0.14 -0.09 4.24 45.52 0.19 0.10 16 11 H 0.10 0.35 7.46 -2.39 -0.02 0.33 16 12 N -0.69 -0.34 5.36 -567.62 -3.04 -3.39 16 13 C 0.64 4.75 8.06 129.79 1.05 5.80 16 14 O -0.60 -7.83 11.48 19.82 0.23 -7.61 16 15 O -0.37 -2.23 9.94 -55.47 -0.55 -2.78 16 16 C 0.13 0.46 1.13 -10.80 -0.01 0.45 16 17 C -0.18 -0.77 8.37 71.98 0.60 -0.17 16 18 C -0.14 0.22 8.85 71.98 0.64 0.86 16 19 C -0.18 -0.69 8.37 71.98 0.60 -0.09 16 20 C -0.12 0.75 7.39 31.12 0.23 0.98 16 21 C -0.14 -0.54 8.77 22.37 0.20 -0.34 16 22 C -0.11 -0.51 5.96 22.31 0.13 -0.38 16 23 Br -0.03 -0.06 29.81 -20.37 -0.61 -0.67 16 24 C -0.06 -0.33 4.49 -19.84 -0.09 -0.42 16 25 C -0.07 0.01 2.43 71.24 0.17 0.18 16 26 O -0.56 1.22 11.50 -148.98 -1.71 -0.49 16 27 Si 0.75 -0.69 31.36 68.60 2.15 1.46 16 28 C -0.15 -0.99 8.35 22.35 0.19 -0.80 16 29 H 0.12 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.06 -0.06 7.66 -2.39 -0.02 -0.08 16 31 H 0.07 -0.07 7.66 -2.39 -0.02 -0.09 16 32 H 0.08 -0.37 7.65 -2.39 -0.02 -0.38 16 33 H 0.08 -0.35 7.37 -2.39 -0.02 -0.37 16 34 H 0.09 -0.16 7.89 -2.39 -0.02 -0.18 16 35 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.42 -1.96 8.84 -92.71 -0.82 -2.78 16 37 H 0.06 0.22 8.14 -2.38 -0.02 0.21 16 38 H 0.09 0.06 8.14 -2.38 -0.02 0.04 16 39 H 0.06 0.62 5.88 -2.38 -0.01 0.60 16 40 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.10 -0.48 8.14 -2.38 -0.02 -0.50 16 42 H 0.07 -0.13 8.14 -2.38 -0.02 -0.14 16 43 H 0.06 0.59 5.88 -2.39 -0.01 0.57 16 44 H 0.09 0.03 8.14 -2.38 -0.02 0.01 16 45 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 47 H 0.11 -1.17 8.08 -2.39 -0.02 -1.19 16 48 H 0.17 -0.22 6.30 -2.91 -0.02 -0.24 16 49 H 0.10 -0.24 7.15 -2.38 -0.02 -0.26 16 50 H 0.41 -5.11 8.74 -74.05 -0.65 -5.76 16 51 H -0.31 -2.38 7.11 99.48 0.71 -1.67 16 52 H -0.25 -0.67 6.26 99.48 0.62 -0.04 16 53 H 0.16 0.67 5.39 -2.91 -0.02 0.65 16 Total: 0.00 -22.36 440.20 0.13 -22.23 By element: Atomic # 1 Polarization: -11.74 SS G_CDS: -0.56 Total: -12.30 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.83 Total: 9.89 kcal Atomic # 7 Polarization: -0.34 SS G_CDS: -3.04 Total: -3.39 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -3.65 Total: -17.22 kcal Atomic # 14 Polarization: -0.69 SS G_CDS: 2.15 Total: 1.46 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -0.61 Total: -0.67 kcal Total: -22.36 0.13 -22.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2162974_15734236.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.675 kcal (2) G-P(sol) polarization free energy of solvation -22.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds