Wall clock time and date at job start Tue Mar 9 2021 15:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36008 * 117.00027 * 2 1 4 4 C 1.38521 * 120.06500 * 0.23197 * 3 2 1 5 5 C 1.38279 * 120.00911 * 180.27436 * 4 3 2 6 6 C 1.50696 * 119.93119 * 179.77281 * 5 4 3 7 7 O 1.42904 * 109.47437 * 104.67588 * 6 5 4 8 8 Si 1.86305 * 109.47118 * 344.67311 * 6 5 4 9 9 H 1.48498 * 109.47145 * 65.72970 * 8 6 5 10 10 H 1.48504 * 109.46956 * 185.72572 * 8 6 5 11 11 H 1.48498 * 109.47055 * 305.72750 * 8 6 5 12 12 C 1.38294 * 120.13691 * 359.74602 * 5 4 3 13 13 Br 1.89092 * 119.93600 * 179.97438 * 12 5 4 14 14 C 1.38361 * 120.12328 * 0.02562 * 12 5 4 15 15 C 1.38515 * 119.99359 * 359.97438 * 14 12 5 16 16 O 1.35993 * 120.06704 * 179.97438 * 15 14 12 17 17 C 1.42897 * 116.99760 * 0.02562 * 16 15 14 18 18 C 1.53009 * 109.46744 * 179.97438 * 17 16 15 19 19 C 1.52994 * 109.47056 * 179.97438 * 18 17 16 20 20 O 1.42905 * 109.47127 * 180.02562 * 19 18 17 21 21 Si 1.63099 * 113.99811 * 179.97438 * 20 19 18 22 22 C 1.86296 * 109.47332 * 299.99975 * 21 20 19 23 23 C 1.86303 * 109.47197 * 60.00426 * 21 20 19 24 24 C 1.86299 * 109.46903 * 180.02562 * 21 20 19 25 25 C 1.52992 * 109.47374 * 60.00099 * 24 21 20 26 26 C 1.53002 * 109.47310 * 180.02562 * 24 21 20 27 27 C 1.53003 * 109.47214 * 299.99823 * 24 21 20 28 28 H 1.09006 * 109.46983 * 299.99792 * 1 2 3 29 29 H 1.09001 * 109.47694 * 59.99967 * 1 2 3 30 30 H 1.08999 * 109.47073 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99577 * 0.04721 * 4 3 2 32 32 H 1.08998 * 109.47238 * 224.67456 * 6 5 4 33 33 H 0.96704 * 113.99597 * 299.99914 * 7 6 5 34 34 H 1.07998 * 119.99812 * 180.02562 * 14 12 5 35 35 H 1.08994 * 109.47751 * 59.99983 * 17 16 15 36 36 H 1.09001 * 109.46956 * 299.98855 * 17 16 15 37 37 H 1.08998 * 109.47053 * 299.99845 * 18 17 16 38 38 H 1.09003 * 109.46669 * 59.99706 * 18 17 16 39 39 H 1.08998 * 109.47388 * 300.00039 * 19 18 17 40 40 H 1.09003 * 109.47547 * 60.00000 * 19 18 17 41 41 H 1.09004 * 109.47245 * 60.00589 * 22 21 20 42 42 H 1.08997 * 109.47034 * 180.02562 * 22 21 20 43 43 H 1.08994 * 109.47157 * 300.00257 * 22 21 20 44 44 H 1.08993 * 109.47269 * 59.99087 * 23 21 20 45 45 H 1.09001 * 109.47122 * 180.02562 * 23 21 20 46 46 H 1.09008 * 109.46496 * 299.99605 * 23 21 20 47 47 H 1.09005 * 109.47348 * 59.99856 * 25 24 21 48 48 H 1.08999 * 109.47755 * 179.97438 * 25 24 21 49 49 H 1.09000 * 109.47550 * 300.00132 * 25 24 21 50 50 H 1.09004 * 109.47166 * 59.99888 * 26 24 21 51 51 H 1.08995 * 109.47449 * 179.97438 * 26 24 21 52 52 H 1.09002 * 109.46962 * 300.00195 * 26 24 21 53 53 H 1.09005 * 109.46624 * 59.99865 * 27 24 21 54 54 H 1.09004 * 109.47396 * 179.97438 * 27 24 21 55 55 H 1.08994 * 109.47344 * 300.00651 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2933 2.3744 0.0049 5 6 1.9223 3.6059 -0.0009 6 6 1.1012 4.8695 -0.0008 7 8 1.1332 5.4584 1.3009 8 14 -0.6595 4.4661 -0.4568 9 1 -1.2649 3.6224 0.6047 10 1 -1.4365 5.7244 -0.5922 11 1 -0.6806 3.7301 -1.7464 12 6 3.3032 3.6802 -0.0062 13 35 4.1574 5.3672 -0.0147 14 6 4.0609 2.5225 -0.0063 15 6 3.4364 1.2862 -0.0005 16 8 4.1797 0.1474 -0.0012 17 6 5.6005 0.3000 -0.0073 18 6 6.2616 -1.0798 -0.0064 19 6 7.7828 -0.9164 -0.0137 20 8 8.4003 -2.2052 -0.0134 21 14 10.0306 -2.1595 -0.0216 22 6 10.6194 -1.2682 -1.5478 23 6 10.6343 -1.2606 1.4944 24 6 10.7005 -3.8979 -0.0213 25 6 10.2048 -4.6358 -1.2665 26 6 12.2299 -3.8552 -0.0282 27 6 10.2171 -4.6306 1.2319 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2148 2.3190 0.0094 32 1 1.5131 5.5705 -0.7268 33 1 0.7810 4.8891 1.9988 34 1 5.1392 2.5830 -0.0100 35 1 5.9105 0.8516 0.8801 36 1 5.9031 0.8477 -0.8998 37 1 5.9589 -1.6272 0.8862 38 1 5.9515 -1.6318 -0.8938 39 1 8.0852 -0.3692 -0.9065 40 1 8.0932 -0.3643 0.8734 41 1 10.2275 -0.2510 -1.5484 42 1 11.7089 -1.2381 -1.5534 43 1 10.2662 -1.7941 -2.4347 44 1 10.2898 -1.7820 2.3874 45 1 11.7239 -1.2297 1.4888 46 1 10.2423 -0.2434 1.4937 47 1 10.5492 -4.1138 -2.1593 48 1 10.5970 -5.6527 -1.2666 49 1 9.1152 -4.6663 -1.2612 50 1 12.5828 -3.3297 0.8592 51 1 12.6218 -4.8723 -0.0276 52 1 12.5747 -3.3331 -0.9208 53 1 9.1274 -4.6610 1.2373 54 1 10.6086 -5.6479 1.2319 55 1 10.5701 -4.1050 2.1191 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2162974_18527724.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:16:10 Heat of formation + Delta-G solvation = -173.305371 kcal Electronic energy + Delta-G solvation = -32074.008236 eV Core-core repulsion = 27667.714566 eV Total energy + Delta-G solvation = -4406.293670 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 434.113 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.89455 -39.81396 -39.07964 -38.17319 -37.02970 -36.82332 -33.71495 -32.88725 -31.95839 -30.14681 -29.36817 -29.05282 -28.45341 -27.83629 -27.37265 -27.02872 -25.89488 -23.77013 -22.63501 -22.25171 -20.41774 -19.78419 -18.64839 -18.24589 -17.60725 -17.44843 -17.43383 -16.82039 -16.39630 -16.12819 -15.99955 -15.97206 -15.90417 -15.33330 -15.15734 -14.85728 -14.84096 -14.72682 -14.34356 -14.21712 -13.93493 -13.81769 -13.59290 -13.37281 -13.24788 -13.13481 -13.12113 -12.95048 -12.92894 -12.78815 -12.77689 -12.57696 -12.38971 -12.23689 -12.15719 -12.12794 -11.93806 -11.84247 -11.69365 -11.68557 -11.36012 -11.28748 -11.23092 -11.09358 -10.44034 -10.29951 -10.04969 -9.93376 -8.97289 -0.10977 -0.04329 0.58855 1.09121 1.38126 1.42913 1.48558 1.79385 1.87756 2.06122 2.14005 2.16122 2.26716 2.52922 3.35265 3.49264 3.63375 3.84700 3.89175 3.95542 3.98145 4.11612 4.13084 4.13476 4.25313 4.27600 4.30983 4.35971 4.38083 4.40777 4.47010 4.47832 4.64127 4.67159 4.74949 4.75665 4.76573 4.79371 4.80697 4.83105 4.83253 4.99579 5.00528 5.06450 5.07069 5.09605 5.09991 5.22189 5.25152 5.35297 5.41404 5.45310 5.55807 5.61813 5.65789 5.93236 6.38983 6.70551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.320 6.320 3 C 0.110 3.890 4 C -0.173 4.173 5 C -0.090 4.090 6 C -0.085 4.085 7 O -0.538 6.538 8 Si 0.970 3.030 9 H -0.235 1.235 10 H -0.267 1.267 11 H -0.253 1.253 12 C -0.075 4.075 13 Br -0.034 7.034 14 C -0.145 4.145 15 C 0.102 3.898 16 O -0.314 6.314 17 C 0.049 3.951 18 C -0.119 4.119 19 C 0.080 3.920 20 O -0.641 6.641 21 Si 1.317 2.683 22 C -0.518 4.518 23 C -0.518 4.518 24 C -0.385 4.385 25 C -0.137 4.137 26 C -0.140 4.140 27 C -0.137 4.137 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.157 0.843 32 H 0.119 0.881 33 H 0.388 0.612 34 H 0.163 0.837 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.047 0.953 49 H 0.055 0.945 50 H 0.063 0.937 51 H 0.049 0.951 52 H 0.063 0.937 53 H 0.055 0.945 54 H 0.047 0.953 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 0.206 0.025 0.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.234 6.234 3 C 0.063 3.937 4 C -0.192 4.192 5 C -0.093 4.093 6 C -0.195 4.195 7 O -0.344 6.344 8 Si 0.792 3.208 9 H -0.158 1.158 10 H -0.192 1.192 11 H -0.177 1.177 12 C -0.155 4.155 13 Br 0.052 6.948 14 C -0.165 4.165 15 C 0.056 3.944 16 O -0.228 6.228 17 C -0.026 4.026 18 C -0.156 4.156 19 C 0.005 3.995 20 O -0.600 6.600 21 Si 1.447 2.553 22 C -0.619 4.619 23 C -0.619 4.619 24 C -0.427 4.427 25 C -0.194 4.194 26 C -0.198 4.198 27 C -0.194 4.194 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.174 0.826 32 H 0.137 0.863 33 H 0.237 0.763 34 H 0.181 0.819 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.082 0.918 51 H 0.068 0.932 52 H 0.082 0.918 53 H 0.074 0.926 54 H 0.066 0.934 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.322 0.543 -0.520 1.521 hybrid contribution 0.579 -0.594 0.336 0.896 sum -0.742 -0.051 -0.184 0.767 Atomic orbital electron populations 1.23490 0.76351 1.06174 1.02506 1.86205 1.23308 1.25490 1.88351 1.18457 0.89481 0.85720 1.00010 1.21049 1.00753 0.90281 1.07156 1.20037 0.92757 0.95629 1.00887 1.25125 1.09955 0.94213 0.90204 1.86565 1.87119 1.44681 1.16057 0.85426 0.73953 0.80236 0.81233 1.15817 1.19159 1.17726 1.21424 0.94098 0.91923 1.08061 1.96760 1.78531 1.22004 1.97493 1.21188 1.01582 0.89142 1.04633 1.18263 0.88484 0.86138 1.01560 1.86161 1.19987 1.28027 1.88664 1.22977 0.77056 0.99164 1.03360 1.21460 0.94028 0.95563 1.04596 1.22001 0.92177 0.82790 1.02534 1.85321 1.48248 1.34766 1.91693 0.76170 0.50689 0.63631 0.64797 1.27092 1.07308 1.09265 1.18283 1.27092 1.07416 1.09343 1.18093 1.25958 1.00972 1.18099 0.97713 1.21539 1.00909 1.00129 0.96841 1.21600 0.93689 1.02141 1.02325 1.21543 1.00952 1.00150 0.96778 0.91166 0.91477 0.86116 0.82573 0.86270 0.76343 0.81911 0.89985 0.89965 0.90589 0.90600 0.90685 0.90678 0.90766 0.90382 0.91236 0.91230 0.90381 0.90771 0.92051 0.93416 0.92630 0.91760 0.93231 0.91759 0.92638 0.93415 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.32 -1.50 10.28 -79.78 -0.82 -2.32 16 3 C 0.11 0.47 6.70 22.57 0.15 0.62 16 4 C -0.17 -0.12 7.64 22.35 0.17 0.05 16 5 C -0.09 -0.12 5.26 -19.84 -0.10 -0.22 16 6 C -0.08 0.04 2.02 71.23 0.14 0.19 16 7 O -0.54 0.03 12.71 -148.98 -1.89 -1.87 16 8 Si 0.97 -2.38 25.31 68.60 1.74 -0.64 16 9 H -0.24 1.15 6.96 99.48 0.69 1.85 16 10 H -0.27 -0.25 7.11 99.48 0.71 0.46 16 11 H -0.25 0.37 7.11 99.48 0.71 1.08 16 12 C -0.07 -0.20 6.22 22.31 0.14 -0.06 16 13 Br -0.03 -0.10 31.96 -20.37 -0.65 -0.75 16 14 C -0.15 -0.24 8.77 22.37 0.20 -0.04 16 15 C 0.10 0.45 6.70 22.57 0.15 0.60 16 16 O -0.31 -1.53 9.92 -79.62 -0.79 -2.32 16 17 C 0.05 -0.10 4.74 71.99 0.34 0.24 16 18 C -0.12 0.15 5.95 30.60 0.18 0.33 16 19 C 0.08 -0.29 5.12 71.98 0.37 0.08 16 20 O -0.64 0.08 8.56 -148.98 -1.28 -1.19 16 21 Si 1.32 -3.92 8.45 68.60 0.58 -3.34 16 22 C -0.52 1.47 8.50 113.37 0.96 2.43 16 23 C -0.52 1.47 8.50 113.37 0.96 2.43 16 24 C -0.39 0.17 0.53 -10.79 -0.01 0.16 16 25 C -0.14 -0.11 7.85 71.98 0.56 0.46 16 26 C -0.14 0.19 7.85 71.98 0.56 0.76 16 27 C -0.14 -0.10 7.85 71.98 0.56 0.46 16 28 H 0.07 -0.44 7.65 -2.38 -0.02 -0.46 16 29 H 0.07 -0.38 7.67 -2.39 -0.02 -0.40 16 30 H 0.12 -0.81 8.14 -2.39 -0.02 -0.83 16 31 H 0.16 -0.54 3.28 -2.91 -0.01 -0.55 16 32 H 0.12 -0.01 7.20 -2.39 -0.02 -0.03 16 33 H 0.39 -2.63 8.70 -74.05 -0.64 -3.27 16 34 H 0.16 -0.42 6.30 -2.91 -0.02 -0.44 16 35 H 0.08 -0.43 7.66 -2.39 -0.02 -0.45 16 36 H 0.08 -0.44 7.66 -2.39 -0.02 -0.46 16 37 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.08 -0.53 7.21 -2.39 -0.02 -0.55 16 40 H 0.08 -0.53 7.22 -2.39 -0.02 -0.55 16 41 H 0.07 -0.31 7.48 -2.38 -0.02 -0.33 16 42 H 0.08 -0.26 7.79 -2.39 -0.02 -0.28 16 43 H 0.07 -0.13 7.79 -2.39 -0.02 -0.14 16 44 H 0.07 -0.13 7.79 -2.39 -0.02 -0.14 16 45 H 0.08 -0.26 7.79 -2.39 -0.02 -0.28 16 46 H 0.07 -0.31 7.48 -2.38 -0.02 -0.33 16 47 H 0.06 -0.05 7.79 -2.38 -0.02 -0.07 16 48 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 49 H 0.05 0.09 7.97 -2.39 -0.02 0.07 16 50 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 51 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 52 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 53 H 0.05 0.09 7.97 -2.38 -0.02 0.07 16 54 H 0.05 0.08 8.14 -2.38 -0.02 0.06 16 55 H 0.06 -0.05 7.80 -2.39 -0.02 -0.07 16 Total: 0.00 -13.55 451.00 4.32 -9.23 By element: Atomic # 1 Polarization: -7.33 SS G_CDS: 0.97 Total: -6.36 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 6.47 Total: 9.56 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: -4.78 Total: -7.70 kcal Atomic # 14 Polarization: -6.30 SS G_CDS: 2.32 Total: -3.98 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -0.65 Total: -0.75 kcal Total: -13.55 4.32 -9.23 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2162974_18527724.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.077 kcal (2) G-P(sol) polarization free energy of solvation -13.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds