Wall clock time and date at job start Tue Mar 9 2021 15:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46981 * 2 1 4 4 C 1.53002 * 109.47077 * 240.00059 * 2 1 3 5 5 Si 1.86295 * 109.47608 * 119.99844 * 2 1 3 6 6 C 1.86302 * 109.47224 * 300.00262 * 5 2 1 7 7 C 1.86298 * 109.47404 * 180.02562 * 5 2 1 8 8 O 1.63101 * 109.47084 * 60.00093 * 5 2 1 9 9 C 1.42899 * 114.00121 * 180.02562 * 8 5 2 10 10 C 1.52995 * 109.47127 * 180.02562 * 9 8 5 11 11 O 1.42904 * 109.47279 * 65.00067 * 10 9 8 12 12 C 1.42903 * 114.00146 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47119 * 179.97438 * 12 11 10 14 14 O 1.42904 * 109.47191 * 65.00005 * 13 12 11 15 15 C 1.35924 * 117.00161 * 179.97438 * 14 13 12 16 16 C 1.38666 * 120.05984 * 0.02562 * 15 14 13 17 17 C 1.38191 * 119.96042 * 180.02562 * 16 15 14 18 18 C 1.38236 * 120.07105 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.93469 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.46938 * 299.99527 * 19 18 17 21 21 Si 1.86299 * 109.46748 * 179.97438 * 19 18 17 22 22 H 1.48503 * 109.47188 * 60.00070 * 21 19 18 23 23 H 1.48506 * 109.47139 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47505 * 299.99883 * 21 19 18 25 25 C 1.38288 * 120.12567 * 0.22877 * 18 17 16 26 26 C 1.38217 * 120.03547 * 359.49507 * 25 18 17 27 27 Cl 1.73601 * 120.03754 * 180.23016 * 26 25 18 28 28 H 1.09001 * 109.46708 * 299.99865 * 1 2 3 29 29 H 1.08994 * 109.47550 * 60.00039 * 1 2 3 30 30 H 1.08999 * 109.46743 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46907 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46465 * 300.00005 * 3 2 1 33 33 H 1.08999 * 109.47121 * 59.99981 * 3 2 1 34 34 H 1.08992 * 109.47425 * 299.99386 * 4 2 1 35 35 H 1.09001 * 109.46839 * 59.99926 * 4 2 1 36 36 H 1.09002 * 109.46899 * 179.97438 * 4 2 1 37 37 H 1.08994 * 109.47158 * 179.97438 * 6 5 2 38 38 H 1.09003 * 109.46744 * 299.99665 * 6 5 2 39 39 H 1.09001 * 109.46930 * 59.99558 * 6 5 2 40 40 H 1.08999 * 109.47223 * 300.00074 * 7 5 2 41 41 H 1.09003 * 109.47317 * 59.99874 * 7 5 2 42 42 H 1.09001 * 109.47676 * 179.97438 * 7 5 2 43 43 H 1.09000 * 109.47048 * 60.00002 * 9 8 5 44 44 H 1.08996 * 109.47264 * 300.00000 * 9 8 5 45 45 H 1.08999 * 109.47313 * 304.99726 * 10 9 8 46 46 H 1.09002 * 109.47666 * 185.00170 * 10 9 8 47 47 H 1.08997 * 109.47146 * 59.99984 * 12 11 10 48 48 H 1.08998 * 109.46762 * 300.00173 * 12 11 10 49 49 H 1.09000 * 109.46982 * 305.00032 * 13 12 11 50 50 H 1.08993 * 109.47433 * 184.99848 * 13 12 11 51 51 H 1.08007 * 120.01714 * 359.97438 * 16 15 14 52 52 H 1.08000 * 119.96298 * 179.97438 * 17 16 15 53 53 H 1.09000 * 109.47161 * 59.99793 * 19 18 17 54 54 H 0.96698 * 114.00355 * 299.99977 * 20 19 18 55 55 H 1.07998 * 119.98221 * 179.72428 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1511 -0.8781 1.5211 6 6 1.5301 0.0000 3.0423 7 6 4.0141 -0.8774 1.5214 8 8 1.6075 -2.4159 1.5211 9 6 2.0288 -3.1813 2.6520 10 6 1.4641 -4.5993 2.5470 11 8 2.0334 -5.2561 1.4127 12 6 1.5704 -6.5947 1.2231 13 6 2.2419 -7.1962 -0.0131 14 8 3.6476 -7.3114 0.2169 15 6 4.3971 -7.8322 -0.7903 16 6 3.7924 -8.2236 -1.9752 17 6 4.5563 -8.7533 -2.9978 18 6 5.9224 -8.8939 -2.8404 19 6 6.7525 -9.4725 -3.9573 20 8 6.3000 -10.7957 -4.2508 21 14 8.5406 -9.5280 -3.4374 22 1 8.6782 -10.3775 -2.2272 23 1 9.3586 -10.0987 -4.5378 24 1 9.0106 -8.1526 -3.1328 25 6 6.5281 -8.5095 -1.6581 26 6 5.7695 -7.9738 -0.6344 27 17 6.5307 -7.4858 0.8475 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.8931 -0.5140 3.9322 38 1 1.8935 1.0277 3.0422 39 1 0.4401 0.0000 3.0423 40 1 4.3778 -1.3910 0.6314 41 1 4.3771 0.1504 1.5216 42 1 4.3775 -1.3908 2.4116 43 1 1.6640 -2.7111 3.5652 44 1 3.1176 -3.2251 2.6758 45 1 0.3810 -4.5517 2.4336 46 1 1.7104 -5.1564 3.4509 47 1 0.4896 -6.5888 1.0823 48 1 1.8194 -7.1928 2.0996 49 1 2.0662 -6.5496 -0.8728 50 1 1.8238 -8.1835 -0.2095 51 1 2.7249 -8.1152 -2.0986 52 1 4.0853 -9.0585 -3.9205 53 1 6.6519 -8.8487 -4.8455 54 1 6.3609 -11.4069 -3.5039 55 1 7.5950 -8.6245 -1.5360 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2162996_16896866.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:31:23 Heat of formation + Delta-G solvation = -191.772519 kcal Electronic energy + Delta-G solvation = -32308.002758 eV Core-core repulsion = 27880.926502 eV Total energy + Delta-G solvation = -4427.076256 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 390.163 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.41810 -39.59305 -38.90671 -37.74061 -37.38510 -36.94545 -36.82634 -32.52374 -32.11959 -31.16943 -29.71079 -29.20253 -29.06771 -27.84055 -27.38611 -26.45180 -24.88611 -23.45892 -23.21559 -22.28439 -20.41743 -19.61131 -18.37999 -18.13384 -17.93832 -17.55014 -16.70938 -16.67379 -16.40489 -16.19701 -16.08957 -15.73347 -15.72141 -15.52911 -15.42970 -14.85434 -14.81526 -14.65591 -14.62036 -14.23901 -14.06436 -13.93778 -13.55571 -13.46736 -13.37623 -13.19831 -13.05084 -12.95900 -12.92907 -12.73181 -12.63148 -12.50621 -12.41367 -12.35990 -12.22844 -12.16805 -11.91008 -11.85564 -11.77424 -11.69569 -11.67956 -11.49797 -11.19269 -10.55095 -10.42769 -10.30677 -10.05169 -10.02960 -9.23673 0.01702 0.10756 1.09412 1.16932 1.42766 1.49369 1.53964 1.79922 1.89858 2.04448 2.13007 2.43603 2.49227 2.69893 3.50370 3.55012 3.70796 3.85000 3.98495 4.07617 4.11176 4.11944 4.12519 4.15258 4.23258 4.32231 4.33713 4.43870 4.48755 4.51564 4.52670 4.59409 4.65831 4.70470 4.72997 4.73654 4.77918 4.78854 4.81401 4.83314 4.83468 4.83555 4.99585 5.08780 5.09100 5.09336 5.20003 5.31825 5.33393 5.40565 5.43669 5.51361 5.52621 5.58163 5.63274 6.19464 6.31237 6.70933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.381 4.381 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.312 2.688 6 C -0.513 4.513 7 C -0.521 4.521 8 O -0.634 6.634 9 C 0.075 3.925 10 C 0.054 3.946 11 O -0.399 6.399 12 C 0.058 3.942 13 C 0.053 3.947 14 O -0.313 6.313 15 C 0.136 3.864 16 C -0.196 4.196 17 C -0.041 4.041 18 C -0.148 4.148 19 C -0.062 4.062 20 O -0.548 6.548 21 Si 0.961 3.039 22 H -0.254 1.254 23 H -0.269 1.269 24 H -0.260 1.260 25 C -0.087 4.087 26 C -0.086 4.086 27 Cl -0.068 7.068 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.064 0.936 49 H 0.077 0.923 50 H 0.105 0.895 51 H 0.162 0.838 52 H 0.156 0.844 53 H 0.133 0.867 54 H 0.390 0.610 55 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 -1.156 0.965 4.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.423 4.423 3 C -0.198 4.198 4 C -0.192 4.192 5 Si 1.442 2.558 6 C -0.616 4.616 7 C -0.621 4.621 8 O -0.594 6.594 9 C 0.000 4.000 10 C -0.022 4.022 11 O -0.319 6.319 12 C -0.018 4.018 13 C -0.022 4.022 14 O -0.226 6.226 15 C 0.089 3.911 16 C -0.214 4.214 17 C -0.059 4.059 18 C -0.149 4.149 19 C -0.174 4.174 20 O -0.355 6.355 21 Si 0.786 3.214 22 H -0.178 1.178 23 H -0.194 1.194 24 H -0.185 1.185 25 C -0.105 4.105 26 C -0.114 4.114 27 Cl -0.040 7.040 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.113 0.887 48 H 0.082 0.918 49 H 0.095 0.905 50 H 0.123 0.877 51 H 0.180 0.820 52 H 0.174 0.826 53 H 0.151 0.849 54 H 0.239 0.761 55 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.045 -0.907 0.705 3.255 hybrid contribution -0.064 0.299 0.746 0.806 sum -3.109 -0.609 1.451 3.484 Atomic orbital electron populations 1.21521 0.93950 1.01766 1.01954 1.25878 1.00622 1.02930 1.12905 1.21603 1.01109 0.94690 1.02351 1.21512 1.00685 0.99943 0.97074 0.76276 0.61956 0.53056 0.64543 1.27033 1.07050 1.09750 1.17733 1.27173 1.26290 1.04624 1.04036 1.85381 1.79189 1.46473 1.48308 1.22291 0.99198 0.90831 0.87714 1.22810 0.98426 0.92011 0.88923 1.87996 1.68573 1.26738 1.48608 1.22687 0.98529 0.83359 0.97212 1.23212 0.77544 1.02077 0.99326 1.86211 1.21270 1.77239 1.37929 1.18888 0.89492 0.93866 0.88818 1.21566 1.02297 1.04981 0.92584 1.21155 0.92391 0.93416 0.98947 1.20267 0.95722 1.03748 0.95190 1.24763 1.06486 0.86105 1.00014 1.86488 1.87983 1.19289 1.41739 0.85522 0.75451 0.80825 0.79583 1.17767 1.19366 1.18492 1.20899 0.99914 0.97813 0.91908 1.20269 0.90787 1.09387 0.90928 1.98370 1.81261 1.90515 1.33822 0.91856 0.93269 0.92576 0.92152 0.93013 0.91570 0.92805 0.93153 0.92690 0.90866 0.90360 0.90745 0.91984 0.90448 0.91442 0.88875 0.92209 0.91416 0.90511 0.88694 0.91817 0.90494 0.87682 0.82013 0.82628 0.84935 0.76128 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.13 7.85 71.98 0.56 0.44 16 2 C -0.38 -0.36 0.53 -10.79 -0.01 -0.36 16 3 C -0.14 0.02 7.85 71.98 0.56 0.59 16 4 C -0.13 -0.38 7.85 71.98 0.56 0.18 16 5 Si 1.31 -0.74 8.45 68.60 0.58 -0.16 16 6 C -0.51 0.95 8.50 113.37 0.96 1.92 16 7 C -0.52 -0.86 8.50 113.37 0.96 0.11 16 8 O -0.63 -1.62 8.52 -144.34 -1.23 -2.85 16 9 C 0.07 -0.03 5.50 71.98 0.40 0.37 16 10 C 0.05 -0.04 6.32 71.98 0.45 0.42 16 11 O -0.40 -1.70 10.27 -135.05 -1.39 -3.09 16 12 C 0.06 -0.11 6.32 71.98 0.45 0.35 16 13 C 0.05 -0.09 5.12 71.98 0.37 0.28 16 14 O -0.31 -1.67 9.56 -88.06 -0.84 -2.51 16 15 C 0.14 0.63 6.68 22.52 0.15 0.78 16 16 C -0.20 0.09 9.04 22.36 0.20 0.29 16 17 C -0.04 0.06 9.60 22.26 0.21 0.27 16 18 C -0.15 -0.01 5.39 -19.85 -0.11 -0.12 16 19 C -0.06 0.14 2.82 71.24 0.20 0.34 16 20 O -0.55 0.91 12.77 -148.98 -1.90 -0.99 16 21 Si 0.96 -0.50 25.07 68.60 1.72 1.22 16 22 H -0.25 -0.04 7.11 99.48 0.71 0.67 16 23 H -0.27 -0.65 7.11 99.48 0.71 0.06 16 24 H -0.26 -0.39 7.11 99.48 0.71 0.32 16 25 C -0.09 -0.28 8.45 22.28 0.19 -0.10 16 26 C -0.09 -0.55 6.33 22.41 0.14 -0.41 16 27 Cl -0.07 -0.57 28.51 -2.72 -0.08 -0.64 16 28 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 29 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.06 0.09 7.96 -2.39 -0.02 0.07 16 31 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 32 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.07 -0.14 7.79 -2.39 -0.02 -0.16 16 34 H 0.05 0.22 7.96 -2.39 -0.02 0.20 16 35 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.05 0.13 7.79 -2.39 -0.02 0.11 16 37 H 0.07 -0.22 7.48 -2.39 -0.02 -0.24 16 38 H 0.08 -0.18 7.79 -2.39 -0.02 -0.20 16 39 H 0.07 -0.14 7.79 -2.39 -0.02 -0.16 16 40 H 0.06 0.24 7.79 -2.39 -0.02 0.23 16 41 H 0.08 0.03 7.79 -2.39 -0.02 0.01 16 42 H 0.07 0.08 7.48 -2.39 -0.02 0.06 16 43 H 0.09 -0.54 7.21 -2.39 -0.02 -0.56 16 44 H 0.06 0.01 7.22 -2.39 -0.02 -0.01 16 45 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.08 -0.34 8.14 -2.39 -0.02 -0.35 16 47 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 48 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 49 H 0.08 -0.17 7.66 -2.39 -0.02 -0.18 16 50 H 0.11 -0.76 7.66 -2.39 -0.02 -0.78 16 51 H 0.16 -0.92 6.30 -2.91 -0.02 -0.94 16 52 H 0.16 -0.77 8.06 -2.91 -0.02 -0.80 16 53 H 0.13 -0.61 7.96 -2.39 -0.02 -0.63 16 54 H 0.39 -2.94 8.70 -74.06 -0.64 -3.58 16 55 H 0.14 0.26 4.87 -2.91 -0.01 0.25 16 Total: 0.00 -15.41 452.98 4.11 -11.30 By element: Atomic # 1 Polarization: -8.59 SS G_CDS: 0.97 Total: -7.62 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 6.28 Total: 5.33 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -5.36 Total: -9.43 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: 2.30 Total: 1.06 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.64 kcal Total: -15.41 4.11 -11.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2162996_16896866.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.471 kcal (2) G-P(sol) polarization free energy of solvation -15.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds