Wall clock time and date at job start Tue Mar 9 2021 15:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 113.99700 * 2 1 4 4 C 1.52996 * 112.85101 * 294.01460 * 3 2 1 5 5 F 1.39901 * 109.47036 * 195.88877 * 4 3 2 6 6 F 1.39905 * 109.47346 * 315.88730 * 4 3 2 7 7 F 1.39897 * 109.47394 * 75.89025 * 4 3 2 8 8 C 1.53785 * 113.68972 * 162.74673 * 3 2 1 9 9 C 1.53789 * 87.07950 * 270.87566 * 8 3 2 10 10 H 1.09005 * 113.68567 * 220.00823 * 9 8 3 11 11 C 1.52995 * 113.61504 * 89.11407 * 9 8 3 12 12 O 1.42904 * 109.46877 * 87.50508 * 11 9 8 13 13 C 1.35924 * 116.99923 * 180.02562 * 12 11 9 14 14 C 1.38821 * 120.05953 * 180.02562 * 13 12 11 15 15 Cl 1.73601 * 120.03594 * 359.97438 * 14 13 12 16 16 C 1.38255 * 119.91855 * 179.72545 * 14 13 12 17 17 C 1.38246 * 120.04652 * 0.52513 * 16 14 13 18 18 C 1.50700 * 119.94130 * 179.72831 * 17 16 14 19 19 O 1.42898 * 109.47296 * 119.72561 * 18 17 16 20 20 Si 1.86303 * 109.46953 * 359.72247 * 18 17 16 21 21 C 1.38270 * 120.11571 * 359.44957 * 17 16 14 22 22 C 1.38149 * 120.08051 * 0.29890 * 21 17 16 23 23 C 1.53780 * 87.07944 * 334.56717 * 9 8 3 24 24 H 1.09001 * 109.47262 * 304.83970 * 1 2 3 25 25 H 1.09001 * 109.47264 * 64.84169 * 1 2 3 26 26 H 1.09004 * 109.47178 * 184.83813 * 1 2 3 27 27 H 1.09001 * 113.61786 * 156.32782 * 8 3 2 28 28 H 1.09000 * 113.61585 * 25.41732 * 8 3 2 29 29 H 1.08994 * 109.47648 * 327.50470 * 11 9 8 30 30 H 1.08997 * 109.47049 * 207.49743 * 11 9 8 31 31 H 1.08006 * 119.97446 * 180.26876 * 16 14 13 32 32 H 1.09003 * 109.47045 * 239.72794 * 18 17 16 33 33 H 0.96694 * 113.99804 * 180.02562 * 19 18 17 34 34 H 1.48502 * 109.99844 * 60.00361 * 20 18 17 35 35 H 1.48504 * 109.99663 * 181.32023 * 20 18 17 36 36 H 1.08005 * 119.96143 * 180.27277 * 21 17 16 37 37 H 1.08001 * 120.02581 * 179.97438 * 22 21 17 38 38 H 1.08993 * 113.61411 * 139.98407 * 23 9 8 39 39 H 1.09001 * 113.61459 * 270.80448 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7276 2.0817 -1.2879 5 9 2.6014 3.1705 -1.3773 6 9 1.9159 1.2408 -2.3900 7 9 0.4071 2.5434 -1.2739 8 6 3.4900 1.3230 0.4177 9 6 2.9980 1.4841 1.8658 10 1 3.5936 2.1809 2.4557 11 6 2.7565 0.1542 2.5825 12 8 3.9723 -0.2870 3.1903 13 6 3.9305 -1.4622 3.8719 14 6 5.0750 -1.9502 4.4875 15 17 6.5623 -1.0603 4.3872 16 6 5.0278 -3.1430 5.1849 17 6 3.8449 -3.8545 5.2600 18 6 3.7975 -5.1575 6.0157 19 8 2.8500 -5.0565 7.0806 20 14 5.4828 -5.5301 6.7171 21 6 2.7037 -3.3699 4.6479 22 6 2.7439 -2.1759 3.9541 23 6 1.7209 2.1085 1.2792 24 1 -0.3634 0.5871 0.8435 25 1 -0.3634 0.4369 -0.9302 26 1 -0.3634 -1.0240 0.0867 27 1 4.0390 2.1876 0.0444 28 1 4.0067 0.3809 0.2344 29 1 2.4193 -0.5909 1.8621 30 1 1.9945 0.2883 3.3503 31 1 5.9167 -3.5213 5.6679 32 1 3.5002 -5.9591 5.3395 33 1 2.7672 -5.8608 7.6109 34 1 5.8998 -4.4447 7.6407 35 1 5.4572 -6.8284 7.4377 36 1 1.7798 -3.9256 4.7119 37 1 1.8521 -1.7984 3.4760 38 1 0.8094 1.8005 1.7914 39 1 1.7857 3.1880 1.1427 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2162996_17321600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:31:34 Heat of formation + Delta-G solvation = -198.464044 kcal Electronic energy + Delta-G solvation = -29795.868323 eV Core-core repulsion = 24897.415605 eV Total energy + Delta-G solvation = -4898.452718 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.073 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.25074 -48.78610 -48.72293 -41.77721 -40.98949 -39.11506 -37.75065 -37.21301 -36.92807 -32.21771 -32.01838 -30.41139 -28.20579 -27.54386 -26.76486 -26.15003 -24.30151 -23.14866 -22.28825 -20.57798 -19.89432 -19.55304 -19.32812 -19.16385 -18.55391 -17.43471 -17.30549 -17.15960 -16.88061 -16.45943 -16.08630 -15.78988 -15.73283 -15.65024 -15.57997 -15.31170 -15.16529 -14.94199 -14.89301 -14.78923 -14.56458 -14.23695 -14.05374 -13.94838 -13.83592 -13.43614 -13.15589 -12.78089 -12.64789 -12.52388 -12.46685 -12.24286 -11.95361 -11.88273 -11.82327 -11.74434 -11.57733 -10.80246 -10.50197 -10.00147 -9.21368 -4.94493 0.04900 0.11887 1.12364 1.28344 1.54007 1.56892 1.93212 1.94339 2.10192 2.42422 2.57224 2.63435 2.90379 3.31743 3.33284 3.37641 3.48572 3.61490 3.75288 3.85214 3.90184 4.10823 4.24804 4.27859 4.28678 4.37866 4.39818 4.43224 4.49112 4.52282 4.65371 4.69670 4.72006 4.81947 4.84627 4.85743 5.04224 5.09659 5.34013 5.51211 5.72519 6.22160 6.60061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.343 6.343 3 C 0.038 3.962 4 C 0.432 3.568 5 F -0.177 7.177 6 F -0.188 7.188 7 F -0.184 7.184 8 C -0.115 4.115 9 C -0.094 4.094 10 H 0.111 0.889 11 C 0.065 3.935 12 O -0.312 6.312 13 C 0.138 3.862 14 C -0.083 4.083 15 Cl -0.061 7.061 16 C -0.076 4.076 17 C -0.110 4.110 18 C -0.070 4.070 19 O -0.555 6.555 20 Si 0.739 3.261 21 C -0.048 4.048 22 C -0.194 4.194 23 C -0.133 4.133 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.105 0.895 33 H 0.397 0.603 34 H -0.300 1.300 35 H -0.280 1.280 36 H 0.149 0.851 37 H 0.160 0.840 38 H 0.109 0.891 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.032 -2.330 0.453 3.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.261 6.261 3 C -0.005 4.005 4 C 0.377 3.623 5 F -0.159 7.159 6 F -0.170 7.170 7 F -0.166 7.166 8 C -0.152 4.152 9 C -0.112 4.112 10 H 0.129 0.871 11 C -0.009 4.009 12 O -0.225 6.225 13 C 0.091 3.909 14 C -0.111 4.111 15 Cl -0.032 7.032 16 C -0.094 4.094 17 C -0.111 4.111 18 C -0.179 4.179 19 O -0.366 6.366 20 Si 0.645 3.355 21 C -0.066 4.066 22 C -0.213 4.213 23 C -0.170 4.170 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.133 0.867 27 H 0.140 0.860 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.165 0.835 32 H 0.122 0.878 33 H 0.247 0.753 34 H -0.228 1.228 35 H -0.207 1.207 36 H 0.167 0.833 37 H 0.177 0.823 38 H 0.127 0.873 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.248 -1.826 0.834 3.014 hybrid contribution -1.136 0.060 0.224 1.160 sum -3.385 -1.765 1.058 3.961 Atomic orbital electron populations 1.23300 0.78690 1.05452 1.01740 1.88074 1.22069 1.22180 1.93822 1.24160 1.00455 0.86360 0.89491 1.21557 0.74114 0.78713 0.87913 1.93172 1.69435 1.56635 1.96641 1.93189 1.94865 1.71292 1.57642 1.93181 1.36810 1.89737 1.96860 1.23323 0.90654 1.05641 0.95541 1.22019 0.97919 0.96209 0.95036 0.87068 1.22963 0.84812 0.96152 0.97023 1.86103 1.36986 1.34449 1.64986 1.18791 0.92984 0.86626 0.92458 1.20195 0.87444 0.96624 1.06794 1.98375 1.32297 1.75152 1.97411 1.20819 0.98862 0.92163 0.97578 1.19268 0.93488 0.97251 1.01090 1.24723 1.03768 0.97381 0.92048 1.86529 1.60705 1.43341 1.46000 0.94364 0.78995 0.76547 0.85615 1.21123 0.98412 0.94379 0.92688 1.21495 0.97320 0.97375 1.05121 1.23622 0.99780 1.01433 0.92163 0.90976 0.93938 0.86678 0.86000 0.89147 0.89526 0.89918 0.83475 0.87757 0.75269 1.22803 1.20662 0.83308 0.82262 0.87255 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 10.30 113.37 1.17 1.15 16 2 O -0.34 0.49 8.37 -148.98 -1.25 -0.76 16 3 C 0.04 -0.09 0.84 -10.27 -0.01 -0.09 16 4 C 0.43 0.77 2.52 71.98 0.18 0.95 16 5 F -0.18 -0.39 15.81 44.97 0.71 0.32 16 6 F -0.19 -1.13 17.10 44.97 0.77 -0.36 16 7 F -0.18 -0.39 15.39 44.97 0.69 0.31 16 8 C -0.11 0.34 6.89 31.12 0.21 0.55 16 9 C -0.09 0.47 4.20 -10.27 -0.04 0.42 16 10 H 0.11 -0.60 8.14 -2.38 -0.02 -0.62 16 11 C 0.06 -0.23 4.32 71.98 0.31 0.09 16 12 O -0.31 -0.78 9.60 -92.70 -0.89 -1.67 16 13 C 0.14 0.46 6.68 22.52 0.15 0.61 16 14 C -0.08 -0.41 6.33 22.41 0.14 -0.27 16 15 Cl -0.06 -0.36 28.51 -2.72 -0.08 -0.43 16 16 C -0.08 -0.21 8.45 22.28 0.19 -0.02 16 17 C -0.11 -0.13 5.42 -19.85 -0.11 -0.24 16 18 C -0.07 0.15 2.81 71.24 0.20 0.35 16 19 O -0.56 -0.02 12.74 -148.98 -1.90 -1.92 16 20 Si 0.74 -1.24 29.78 68.60 2.04 0.81 16 21 C -0.05 0.01 9.60 22.26 0.21 0.22 16 22 C -0.19 0.08 9.04 22.36 0.20 0.28 16 23 C -0.13 0.91 6.51 31.12 0.20 1.11 16 24 H 0.07 -0.63 6.55 -2.39 -0.02 -0.65 16 25 H 0.04 -0.12 6.69 -2.39 -0.02 -0.13 16 26 H 0.11 -0.95 8.14 -2.38 -0.02 -0.97 16 27 H 0.12 -0.52 7.02 -2.39 -0.02 -0.53 16 28 H 0.09 -0.08 8.10 -2.39 -0.02 -0.10 16 29 H 0.09 -0.30 5.64 -2.39 -0.01 -0.31 16 30 H 0.08 -0.53 7.66 -2.39 -0.02 -0.55 16 31 H 0.15 0.05 4.87 -2.91 -0.01 0.03 16 32 H 0.10 -0.72 7.96 -2.39 -0.02 -0.74 16 33 H 0.40 -3.09 8.74 -74.06 -0.65 -3.73 16 34 H -0.30 -1.92 7.11 99.48 0.71 -1.21 16 35 H -0.28 -0.53 7.11 99.48 0.71 0.18 16 36 H 0.15 -0.53 8.06 -2.91 -0.02 -0.55 16 37 H 0.16 -0.85 6.30 -2.91 -0.02 -0.87 16 38 H 0.11 -1.05 6.63 -2.39 -0.02 -1.07 16 39 H 0.12 -1.01 8.05 -2.39 -0.02 -1.03 16 Total: 0.00 -15.08 343.99 3.64 -11.44 By element: Atomic # 1 Polarization: -13.37 SS G_CDS: 0.52 Total: -12.85 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 3.01 Total: 5.10 kcal Atomic # 8 Polarization: -0.31 SS G_CDS: -4.03 Total: -4.34 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 2.17 Total: 0.27 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: 2.04 Total: 0.81 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -0.08 Total: -0.43 kcal Total: -15.08 3.64 -11.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2162996_17321600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.021 kcal (2) G-P(sol) polarization free energy of solvation -15.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds