Wall clock time and date at job start Tue Mar 9 2021 15:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47161 * 2 1 4 4 C 1.52994 * 109.47135 * 239.99823 * 2 1 3 5 5 Si 1.86297 * 109.46891 * 119.99837 * 2 1 3 6 6 C 1.86299 * 109.47314 * 300.00137 * 5 2 1 7 7 C 1.86299 * 109.46976 * 179.97438 * 5 2 1 8 8 O 1.63099 * 109.47222 * 60.00213 * 5 2 1 9 9 C 1.42897 * 114.00376 * 180.02562 * 8 5 2 10 10 C 1.52998 * 109.47530 * 180.02562 * 9 8 5 11 11 O 1.42898 * 109.47347 * 64.99675 * 10 9 8 12 12 C 1.35898 * 116.99924 * 180.02562 * 11 10 9 13 13 C 1.38707 * 120.05763 * 0.02562 * 12 11 10 14 14 C 1.38172 * 119.94493 * 179.97438 * 13 12 11 15 15 C 1.50696 * 119.97152 * 179.97438 * 14 13 12 16 16 O 1.42907 * 109.47128 * 300.01515 * 15 14 13 17 17 Si 1.86303 * 109.47147 * 180.02562 * 15 14 13 18 18 H 1.48497 * 109.46912 * 59.99588 * 17 15 14 19 19 H 1.48499 * 109.47203 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46980 * 299.99696 * 17 15 14 21 21 C 1.38240 * 120.05216 * 359.97438 * 14 13 12 22 22 C 1.38288 * 120.11575 * 0.02562 * 21 14 13 23 23 C 1.38119 * 120.05366 * 0.25933 * 22 21 14 24 24 N 1.48008 * 120.02580 * 179.72587 * 23 22 21 25 25 O 1.21793 * 120.00194 * 359.97438 * 24 23 22 26 26 O 1.21803 * 119.99970 * 179.97438 * 24 23 22 27 27 H 1.08996 * 109.46969 * 300.00238 * 1 2 3 28 28 H 1.09005 * 109.46722 * 60.00007 * 1 2 3 29 29 H 1.08999 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47115 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46845 * 299.99831 * 3 2 1 32 32 H 1.09005 * 109.47432 * 59.99428 * 3 2 1 33 33 H 1.08999 * 109.47262 * 300.00253 * 4 2 1 34 34 H 1.09001 * 109.47247 * 59.99939 * 4 2 1 35 35 H 1.08994 * 109.47300 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47342 * 180.02562 * 6 5 2 37 37 H 1.09008 * 109.46874 * 299.99830 * 6 5 2 38 38 H 1.08994 * 109.47419 * 60.00130 * 6 5 2 39 39 H 1.08996 * 109.47110 * 300.00064 * 7 5 2 40 40 H 1.08999 * 109.47026 * 60.00332 * 7 5 2 41 41 H 1.09001 * 109.47188 * 179.97438 * 7 5 2 42 42 H 1.09005 * 109.47245 * 59.99342 * 9 8 5 43 43 H 1.09004 * 109.46982 * 299.99643 * 9 8 5 44 44 H 1.09004 * 109.46878 * 304.99107 * 10 9 8 45 45 H 1.09000 * 109.47219 * 185.00107 * 10 9 8 46 46 H 1.07998 * 120.02675 * 359.97438 * 13 12 11 47 47 H 1.08998 * 109.47683 * 60.01427 * 15 14 13 48 48 H 0.96701 * 114.00022 * 300.00908 * 16 15 14 49 49 H 1.08007 * 119.93946 * 180.02562 * 21 14 13 50 50 H 1.08002 * 119.96980 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5299 0.0000 3.0423 7 6 4.0140 -0.8789 1.5208 8 8 1.6073 -2.4159 1.5212 9 6 2.0284 -3.1813 2.6520 10 6 1.4637 -4.5994 2.5471 11 8 2.0330 -5.2561 1.4128 12 6 1.6338 -6.5331 1.1746 13 6 0.7127 -7.1413 2.0147 14 6 0.3080 -8.4395 1.7700 15 6 -0.6922 -9.1010 2.6827 16 8 -0.1674 -9.1469 4.0111 17 14 -1.0254 -10.8344 2.0866 18 1 0.2399 -11.6116 2.0925 19 1 -2.0105 -11.4864 2.9864 20 1 -1.5707 -10.7868 0.7062 21 6 0.8199 -9.1320 0.6886 22 6 1.7382 -8.5280 -0.1505 23 6 2.1504 -7.2325 0.0932 24 7 3.1380 -6.5887 -0.8017 25 8 3.5878 -7.2015 -1.7533 26 8 3.5008 -5.4460 -0.5866 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 1.8936 -0.5135 3.9323 37 1 1.8933 1.0278 3.0423 38 1 0.4400 0.0000 3.0423 39 1 4.3769 -1.3930 0.6309 40 1 4.3777 0.1486 1.5206 41 1 4.3773 -1.3923 2.4110 42 1 1.6636 -2.7111 3.5653 43 1 3.1173 -3.2252 2.6759 44 1 0.3806 -4.5516 2.4336 45 1 1.7100 -5.1564 3.4510 46 1 0.3122 -6.6004 2.8594 47 1 -1.6209 -8.5304 2.6785 48 1 0.6608 -9.6399 4.0900 49 1 0.5019 -10.1466 0.4987 50 1 2.1369 -9.0714 -0.9944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2392260_10264010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:32:39 Heat of formation + Delta-G solvation = -138.157666 kcal Electronic energy + Delta-G solvation = -31024.754901 eV Core-core repulsion = 26758.544347 eV Total energy + Delta-G solvation = -4266.210554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.166 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.24307 -41.56671 -39.62130 -37.93008 -37.62383 -37.30230 -36.82725 -33.54584 -31.96813 -30.56826 -29.30907 -29.04933 -28.77643 -27.83588 -27.37660 -25.72725 -24.96630 -23.09634 -22.77072 -20.63503 -20.41816 -19.74583 -19.04402 -18.61180 -18.36917 -18.06848 -17.13296 -16.75362 -16.30055 -16.23642 -16.09115 -15.87167 -15.57785 -15.53342 -15.13323 -14.85257 -14.74956 -14.30810 -13.99043 -13.91958 -13.58155 -13.51545 -13.35119 -13.22750 -13.15266 -12.96057 -12.92779 -12.75982 -12.65240 -12.46016 -12.41141 -12.27144 -12.21076 -12.14698 -12.06613 -11.82056 -11.75616 -11.69616 -11.50831 -11.27753 -10.81994 -10.45090 -10.29753 -10.04779 -9.80159 -1.28254 -0.14086 0.17252 0.40536 1.09790 1.48067 1.52829 1.53563 1.74460 1.79966 1.94300 2.06604 2.16474 2.49041 3.13232 3.19663 3.43966 3.59888 3.65266 3.82257 3.90188 4.05846 4.12080 4.12669 4.23038 4.30898 4.37229 4.46305 4.47402 4.57003 4.60345 4.62261 4.76139 4.79132 4.80182 4.81315 4.82731 4.83768 4.88660 4.99514 5.08572 5.08898 5.09723 5.19739 5.27595 5.33571 5.40532 5.43538 5.49095 5.61306 5.66986 5.95079 6.51573 6.61983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.385 4.385 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.317 2.683 6 C -0.510 4.510 7 C -0.522 4.522 8 O -0.638 6.638 9 C 0.073 3.927 10 C 0.037 3.963 11 O -0.292 6.292 12 C 0.195 3.805 13 C -0.183 4.183 14 C -0.016 4.016 15 C -0.083 4.083 16 O -0.542 6.542 17 Si 0.975 3.025 18 H -0.246 1.246 19 H -0.273 1.273 20 H -0.252 1.252 21 C -0.162 4.162 22 C -0.013 4.013 23 C -0.107 4.107 24 N 0.038 4.962 25 O -0.202 6.202 26 O -0.168 6.168 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.114 0.886 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.112 0.888 46 H 0.180 0.820 47 H 0.144 0.856 48 H 0.393 0.607 49 H 0.164 0.836 50 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.441 -2.587 7.337 8.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.427 4.427 3 C -0.197 4.197 4 C -0.192 4.192 5 Si 1.447 2.553 6 C -0.613 4.613 7 C -0.622 4.622 8 O -0.598 6.598 9 C -0.002 4.002 10 C -0.037 4.037 11 O -0.203 6.203 12 C 0.145 3.855 13 C -0.202 4.202 14 C -0.017 4.017 15 C -0.193 4.193 16 O -0.350 6.350 17 Si 0.798 3.202 18 H -0.169 1.169 19 H -0.198 1.198 20 H -0.176 1.176 21 C -0.180 4.180 22 C -0.032 4.032 23 C -0.192 4.192 24 N 0.549 4.451 25 O -0.409 6.409 26 O -0.384 6.384 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.131 0.869 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.130 0.870 46 H 0.198 0.802 47 H 0.162 0.838 48 H 0.243 0.757 49 H 0.181 0.819 50 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.572 -3.429 7.300 9.803 hybrid contribution 1.239 0.874 -0.643 1.647 sum -4.333 -2.555 6.658 8.344 Atomic orbital electron populations 1.21524 0.94058 1.01595 1.01988 1.25970 1.00563 1.03076 1.13114 1.21594 1.01146 0.94599 1.02343 1.21506 1.00809 0.99677 0.97249 0.76187 0.61986 0.52766 0.64376 1.26986 1.07086 1.09769 1.17465 1.27172 1.26146 1.04682 1.04248 1.85402 1.79285 1.46757 1.48346 1.22396 0.99969 0.89348 0.88484 1.23665 1.00121 0.92685 0.87231 1.86485 1.63562 1.21648 1.48579 1.18924 0.90865 0.85001 0.90692 1.21416 1.00066 0.96642 1.02071 1.20862 0.93812 0.93162 0.93861 1.25200 0.97944 1.11380 0.84770 1.86541 1.45240 1.78639 1.24532 0.85285 0.81127 0.74241 0.79522 1.16891 1.19773 1.17555 1.21212 0.98991 1.02073 0.95754 1.21089 0.93163 0.89748 0.99209 1.20868 1.03635 0.97261 0.97461 1.43730 1.00279 1.00639 1.00481 1.94502 1.59545 1.65081 1.21730 1.94603 1.63122 1.02680 1.77986 0.91474 0.93566 0.92821 0.92103 0.93268 0.91301 0.93321 0.93445 0.92582 0.90337 0.90328 0.90647 0.92099 0.90470 0.90970 0.86878 0.91219 0.88891 0.86992 0.80231 0.83799 0.75698 0.81854 0.81204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.22 7.85 71.98 0.56 0.35 16 2 C -0.39 -0.66 0.53 -10.80 -0.01 -0.67 16 3 C -0.14 -0.05 7.85 71.98 0.56 0.52 16 4 C -0.14 -0.70 7.85 71.98 0.56 -0.14 16 5 Si 1.32 -1.73 8.45 68.60 0.58 -1.15 16 6 C -0.51 1.95 8.50 113.37 0.96 2.91 16 7 C -0.52 -0.54 8.50 113.37 0.96 0.43 16 8 O -0.64 -0.85 8.52 -144.35 -1.23 -2.08 16 9 C 0.07 -0.28 5.50 71.98 0.40 0.11 16 10 C 0.04 -0.16 5.12 71.98 0.37 0.20 16 11 O -0.29 -1.28 8.12 -67.55 -0.55 -1.83 16 12 C 0.20 0.51 6.67 22.51 0.15 0.66 16 13 C -0.18 0.82 8.60 22.37 0.19 1.01 16 14 C -0.02 0.10 5.39 -19.88 -0.11 -0.01 16 15 C -0.08 0.77 2.82 71.23 0.20 0.97 16 16 O -0.54 4.44 12.77 -148.98 -1.90 2.54 16 17 Si 0.97 -7.72 25.07 68.60 1.72 -6.00 16 18 H -0.25 1.95 7.11 99.48 0.71 2.65 16 19 H -0.27 0.93 7.11 99.48 0.71 1.64 16 20 H -0.25 1.68 7.11 99.48 0.71 2.39 16 21 C -0.16 0.82 8.67 22.28 0.19 1.02 16 22 C -0.01 0.00 9.55 22.25 0.21 0.21 16 23 C -0.11 -0.66 6.87 36.47 0.25 -0.41 16 24 N 0.04 0.52 4.45 -46.24 -0.21 0.31 16 25 O -0.20 -3.06 18.45 18.90 0.35 -2.71 16 26 O -0.17 -2.89 17.24 25.60 0.44 -2.45 16 27 H 0.07 -0.08 7.79 -2.39 -0.02 -0.10 16 28 H 0.05 0.13 8.14 -2.38 -0.02 0.11 16 29 H 0.05 0.14 7.97 -2.39 -0.02 0.12 16 30 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 31 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.07 -0.16 7.79 -2.38 -0.02 -0.18 16 33 H 0.05 0.36 7.97 -2.39 -0.02 0.35 16 34 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.06 0.27 7.79 -2.39 -0.02 0.25 16 36 H 0.08 -0.47 7.48 -2.39 -0.02 -0.49 16 37 H 0.08 -0.31 7.79 -2.38 -0.02 -0.33 16 38 H 0.07 -0.29 7.79 -2.39 -0.02 -0.31 16 39 H 0.06 0.27 7.79 -2.39 -0.02 0.25 16 40 H 0.08 -0.01 7.79 -2.39 -0.02 -0.03 16 41 H 0.07 -0.04 7.48 -2.39 -0.02 -0.06 16 42 H 0.11 -1.22 7.21 -2.38 -0.02 -1.24 16 43 H 0.07 -0.27 7.21 -2.39 -0.02 -0.29 16 44 H 0.09 -0.65 7.66 -2.38 -0.02 -0.67 16 45 H 0.11 -1.21 7.66 -2.39 -0.02 -1.23 16 46 H 0.18 -1.70 6.30 -2.91 -0.02 -1.72 16 47 H 0.14 -1.70 7.96 -2.39 -0.02 -1.72 16 48 H 0.39 -5.57 8.70 -74.06 -0.64 -6.21 16 49 H 0.16 -1.52 4.87 -2.91 -0.01 -1.54 16 50 H 0.17 -0.38 7.61 -2.91 -0.02 -0.40 16 Total: 0.00 -20.43 407.49 5.73 -14.70 By element: Atomic # 1 Polarization: -9.54 SS G_CDS: 1.05 Total: -8.49 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 5.47 Total: 7.16 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -0.21 Total: 0.31 kcal Atomic # 8 Polarization: -3.64 SS G_CDS: -2.89 Total: -6.53 kcal Atomic # 14 Polarization: -9.45 SS G_CDS: 2.30 Total: -7.15 kcal Total: -20.43 5.73 -14.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2392260_10264010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.455 kcal (2) G-P(sol) polarization free energy of solvation -20.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds