Wall clock time and date at job start Tue Mar 9 2021 15:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86294 * 109.47083 * 2 1 4 4 C 1.86301 * 109.47038 * 239.99909 * 2 1 3 5 5 C 1.86301 * 109.47248 * 120.00031 * 2 1 3 6 6 O 1.42902 * 109.47256 * 66.59859 * 5 2 1 7 7 C 1.35877 * 116.99938 * 282.30074 * 6 5 2 8 8 C 1.38814 * 119.93679 * 353.82079 * 7 6 5 9 9 C 1.37925 * 120.06406 * 179.77047 * 8 7 6 10 10 C 1.39353 * 119.93711 * 0.48796 * 9 8 7 11 11 C 1.48358 * 120.06602 * 179.74641 * 10 9 8 12 12 C 1.39359 * 120.12033 * 179.74586 * 11 10 9 13 13 C 1.38012 * 119.87093 * 179.71926 * 12 11 10 14 14 C 1.38324 * 120.12662 * 0.55947 * 13 12 11 15 15 C 1.38325 * 120.24575 * 359.71593 * 14 13 12 16 16 C 1.38013 * 120.12209 * 0.02562 * 15 14 13 17 17 C 1.39403 * 119.86943 * 359.76674 * 10 9 8 18 18 C 1.37889 * 119.93306 * 359.97438 * 17 10 9 19 19 C 1.50704 * 119.96602 * 179.97438 * 18 17 10 20 20 O 1.42898 * 109.46436 * 104.98350 * 19 18 17 21 21 Si 1.86299 * 109.47159 * 344.98354 * 19 18 17 22 22 H 1.48500 * 109.46997 * 59.99800 * 21 19 18 23 23 H 1.48499 * 109.47007 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47165 * 299.99694 * 21 19 18 25 25 H 1.09006 * 109.47258 * 295.77012 * 1 2 3 26 26 H 1.08997 * 109.47454 * 55.77599 * 1 2 3 27 27 H 1.09007 * 109.47095 * 175.77944 * 1 2 3 28 28 H 1.08993 * 109.47062 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47195 * 300.00139 * 3 2 1 30 30 H 1.09003 * 109.47373 * 60.00184 * 3 2 1 31 31 H 1.08997 * 109.47148 * 305.08064 * 4 2 1 32 32 H 1.09006 * 109.46931 * 65.07695 * 4 2 1 33 33 H 1.08995 * 109.46993 * 185.07697 * 4 2 1 34 34 H 1.09006 * 109.47034 * 306.60053 * 5 2 1 35 35 H 1.08997 * 109.47429 * 186.60144 * 5 2 1 36 36 H 1.07997 * 119.96242 * 0.02562 * 8 7 6 37 37 H 1.08002 * 120.02816 * 180.23212 * 9 8 7 38 38 H 1.07997 * 120.06071 * 359.97438 * 12 11 10 39 39 H 1.08008 * 119.93372 * 180.27478 * 13 12 11 40 40 H 1.08002 * 119.87710 * 179.74521 * 14 13 12 41 41 H 1.08001 * 119.93931 * 179.97438 * 15 14 13 42 42 H 1.07997 * 120.06294 * 180.02562 * 16 15 14 43 43 H 1.07998 * 120.03543 * 179.97438 * 17 10 9 44 44 H 1.08998 * 109.46844 * 224.98422 * 19 18 17 45 45 H 0.96697 * 114.00407 * 60.00119 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4841 -0.8782 1.5211 6 8 2.1384 -2.2628 1.4463 7 6 0.8524 -2.5939 1.7342 8 6 -0.0236 -1.6254 2.2050 9 6 -1.3307 -1.9576 2.4935 10 6 -1.7691 -3.2692 2.3217 11 6 -3.1731 -3.6309 2.6365 12 6 -3.6142 -4.9410 2.4601 13 6 -4.9197 -5.2730 2.7601 14 6 -5.7930 -4.3059 3.2241 15 6 -5.3621 -3.0027 3.3957 16 6 -4.0573 -2.6605 3.1039 17 6 -0.8858 -4.2408 1.8538 18 6 0.4185 -3.9016 1.5619 19 6 1.3742 -4.9515 1.0565 20 8 1.5837 -4.7696 -0.3453 21 14 0.6569 -6.6434 1.3629 22 1 -0.6389 -6.7684 0.6484 23 1 1.5990 -7.6779 0.8655 24 1 0.4392 -6.8323 2.8197 25 1 -0.3634 0.4468 0.9255 26 1 -0.3634 0.5780 -0.8497 27 1 -0.3634 -1.0249 -0.0756 28 1 3.5739 1.7564 -0.0005 29 1 2.1206 2.2703 -0.8900 30 1 2.1207 2.2703 0.8900 31 1 2.0483 -1.8763 -1.5678 32 1 2.1968 -0.3146 -2.4088 33 1 3.5701 -0.9577 -1.4768 34 1 2.0275 -0.4371 2.4072 35 1 3.5676 -0.7771 1.5822 36 1 0.3178 -0.6100 2.3415 37 1 -2.0128 -1.2028 2.8563 38 1 -2.9345 -5.6958 2.0932 39 1 -5.2614 -6.2891 2.6279 40 1 -6.8149 -4.5693 3.4537 41 1 -6.0483 -2.2514 3.7579 42 1 -3.7218 -1.6428 3.2386 43 1 -1.2226 -5.2582 1.7200 44 1 2.3253 -4.8597 1.5810 45 1 1.9563 -3.9084 -0.5788 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_2516928_3095236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:46:03 Heat of formation + Delta-G solvation = -54.440749 kcal Electronic energy + Delta-G solvation = -24621.796212 eV Core-core repulsion = 21307.085200 eV Total energy + Delta-G solvation = -3314.711013 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.61858 -40.09890 -38.38128 -37.38404 -33.33955 -32.97042 -31.76100 -29.83315 -29.65375 -28.56885 -28.47809 -27.73903 -26.69328 -24.19208 -23.81817 -22.28056 -21.47967 -19.39172 -18.22392 -17.96309 -17.37954 -16.91734 -16.77518 -16.08282 -15.68066 -15.44818 -15.32454 -15.13546 -14.66481 -14.51500 -14.32930 -14.13188 -14.12295 -14.00326 -13.91044 -13.67015 -13.43381 -13.40054 -13.26855 -13.20234 -12.96329 -12.78427 -12.45249 -12.15016 -12.06720 -11.90523 -11.65953 -11.09729 -11.05375 -11.00646 -10.92666 -10.87096 -10.01084 -9.90559 -9.85250 -8.58133 -0.23983 0.24868 0.50310 0.93075 1.26970 1.37492 1.56036 1.57966 1.60057 1.65260 2.03110 2.34199 2.39495 2.58853 3.11048 3.54481 3.64100 3.68380 3.95661 3.97669 4.03827 4.06191 4.15108 4.24765 4.29015 4.40066 4.49035 4.53179 4.56420 4.57288 4.58981 4.64335 4.67386 4.70227 4.73054 4.74780 4.84550 4.98451 5.12788 5.22905 5.25162 5.32305 5.32839 5.45727 5.49235 5.53920 5.62675 5.68695 5.77556 6.06917 6.32029 6.68167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 0.988 3.012 3 C -0.449 4.449 4 C -0.443 4.443 5 C -0.246 4.246 6 O -0.292 6.292 7 C 0.137 3.863 8 C -0.197 4.197 9 C -0.067 4.067 10 C -0.075 4.075 11 C -0.039 4.039 12 C -0.117 4.117 13 C -0.114 4.114 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.077 4.077 18 C -0.142 4.142 19 C -0.082 4.082 20 O -0.537 6.537 21 Si 1.007 2.993 22 H -0.251 1.251 23 H -0.254 1.254 24 H -0.247 1.247 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.132 0.868 44 H 0.078 0.922 45 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 3.011 0.962 3.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.184 2.816 3 C -0.557 4.557 4 C -0.551 4.551 5 C -0.366 4.366 6 O -0.205 6.205 7 C 0.091 3.909 8 C -0.215 4.215 9 C -0.085 4.085 10 C -0.076 4.076 11 C -0.039 4.039 12 C -0.134 4.134 13 C -0.132 4.132 14 C -0.139 4.139 15 C -0.133 4.133 16 C -0.132 4.132 17 C -0.094 4.094 18 C -0.143 4.143 19 C -0.191 4.191 20 O -0.343 6.343 21 Si 0.827 3.173 22 H -0.175 1.175 23 H -0.178 1.178 24 H -0.170 1.170 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.150 0.850 44 H 0.096 0.904 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -0.386 1.466 1.073 1.857 hybrid contribution 0.390 1.510 0.146 1.567 sum 0.004 2.976 1.219 3.216 Atomic orbital electron populations 1.26475 1.19623 1.05146 1.04566 0.79863 0.68121 0.66832 0.66765 1.26071 1.06480 1.18224 1.04902 1.26009 1.06368 1.08196 1.14539 1.28220 1.06881 0.85764 1.15765 1.85979 1.24291 1.26489 1.83726 1.18870 0.83970 0.93066 0.95021 1.21287 0.94616 0.99901 1.05713 1.21022 0.95016 0.95425 0.96991 1.18578 0.92613 0.93504 1.02876 1.18712 0.92043 0.93730 0.99392 1.21245 0.96279 0.95620 1.00295 1.21130 0.93457 0.99711 0.98943 1.21258 0.99859 0.93321 0.99452 1.21126 0.95787 0.96641 0.99790 1.21212 0.93456 0.99031 0.99472 1.20990 0.91663 0.99570 0.97212 1.19494 0.95436 0.93177 1.06218 1.25178 1.00714 1.08341 0.84822 1.86692 1.86572 1.40216 1.20789 0.84581 0.79781 0.72928 0.80040 1.17491 1.17792 1.17040 0.91008 0.91031 0.90522 0.90962 0.90647 0.91066 0.90846 0.90966 0.90977 0.90873 0.87219 0.84324 0.85143 0.85973 0.85700 0.85880 0.85762 0.85745 0.85047 0.90391 0.78452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.78 7.03 101.05 0.71 1.49 16 2 Si 0.99 -3.19 11.67 -169.99 -1.98 -5.17 16 3 C -0.45 1.21 8.65 101.05 0.87 2.09 16 4 C -0.44 0.80 8.65 101.05 0.87 1.68 16 5 C -0.25 0.53 5.31 101.05 0.54 1.06 16 6 O -0.29 -0.11 8.68 -19.35 -0.17 -0.27 16 7 C 0.14 0.17 5.72 -39.14 -0.22 -0.06 16 8 C -0.20 -0.03 5.59 -39.48 -0.22 -0.25 16 9 C -0.07 -0.04 9.42 -39.28 -0.37 -0.41 16 10 C -0.08 -0.15 5.88 -104.88 -0.62 -0.77 16 11 C -0.04 -0.08 5.88 -104.90 -0.62 -0.70 16 12 C -0.12 -0.22 9.43 -39.25 -0.37 -0.59 16 13 C -0.11 -0.13 10.03 -39.63 -0.40 -0.52 16 14 C -0.12 -0.09 10.04 -39.52 -0.40 -0.49 16 15 C -0.12 -0.08 10.03 -39.63 -0.40 -0.48 16 16 C -0.11 -0.13 9.43 -39.25 -0.37 -0.50 16 17 C -0.08 -0.17 8.03 -39.28 -0.32 -0.49 16 18 C -0.14 -0.29 5.27 -104.52 -0.55 -0.85 16 19 C -0.08 -0.14 2.33 36.01 0.08 -0.05 16 20 O -0.54 -1.23 12.65 -35.23 -0.45 -1.67 16 21 Si 1.01 1.41 25.74 -169.99 -4.38 -2.97 16 22 H -0.25 -0.41 6.73 56.52 0.38 -0.03 16 23 H -0.25 -0.57 7.11 56.52 0.40 -0.17 16 24 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 25 H 0.07 -0.17 6.51 -51.93 -0.34 -0.51 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H 0.08 -0.02 6.51 -51.93 -0.34 -0.36 16 28 H 0.07 -0.20 7.96 -51.93 -0.41 -0.61 16 29 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 30 H 0.07 -0.21 7.96 -51.93 -0.41 -0.62 16 31 H 0.07 -0.10 7.44 -51.93 -0.39 -0.49 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.21 6.07 -51.93 -0.32 -0.52 16 35 H 0.11 -0.35 7.96 -51.93 -0.41 -0.77 16 36 H 0.14 -0.28 4.21 -52.49 -0.22 -0.51 16 37 H 0.13 -0.17 6.20 -52.49 -0.33 -0.50 16 38 H 0.12 0.08 6.20 -52.49 -0.33 -0.25 16 39 H 0.13 -0.10 8.06 -52.48 -0.42 -0.52 16 40 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 41 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 42 H 0.12 -0.10 6.20 -52.49 -0.33 -0.43 16 43 H 0.13 0.18 3.02 -52.49 -0.16 0.02 16 44 H 0.08 0.06 7.82 -51.93 -0.41 -0.34 16 45 H 0.37 0.02 8.08 45.56 0.37 0.38 16 LS Contribution 354.60 15.07 5.34 5.34 Total: 0.00 -4.82 354.60 -9.15 -13.97 By element: Atomic # 1 Polarization: -3.64 SS G_CDS: -5.75 Total: -9.39 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.77 Total: 0.17 kcal Atomic # 8 Polarization: -1.33 SS G_CDS: -0.61 Total: -1.95 kcal Atomic # 14 Polarization: -1.78 SS G_CDS: -6.36 Total: -8.14 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -4.82 -9.15 -13.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2516928_3095236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.472 kcal (2) G-P(sol) polarization free energy of solvation -4.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds