Wall clock time and date at job start Tue Mar 9 2021 15:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86294 * 109.47083 * 2 1 4 4 C 1.86301 * 109.47038 * 239.99909 * 2 1 3 5 5 C 1.86301 * 109.47248 * 120.00031 * 2 1 3 6 6 O 1.42902 * 109.47256 * 66.59859 * 5 2 1 7 7 C 1.35877 * 116.99938 * 282.30074 * 6 5 2 8 8 C 1.38814 * 119.93679 * 353.82079 * 7 6 5 9 9 C 1.37925 * 120.06406 * 179.77047 * 8 7 6 10 10 C 1.39353 * 119.93711 * 0.48796 * 9 8 7 11 11 C 1.48358 * 120.06602 * 179.74641 * 10 9 8 12 12 C 1.39359 * 120.12033 * 179.74586 * 11 10 9 13 13 C 1.38012 * 119.87093 * 179.71926 * 12 11 10 14 14 C 1.38324 * 120.12662 * 0.55947 * 13 12 11 15 15 C 1.38325 * 120.24575 * 359.71593 * 14 13 12 16 16 C 1.38013 * 120.12209 * 0.02562 * 15 14 13 17 17 C 1.39403 * 119.86943 * 359.76674 * 10 9 8 18 18 C 1.37889 * 119.93306 * 359.97438 * 17 10 9 19 19 C 1.50704 * 119.96602 * 179.97438 * 18 17 10 20 20 O 1.42898 * 109.46436 * 104.98350 * 19 18 17 21 21 Si 1.86299 * 109.47159 * 344.98354 * 19 18 17 22 22 H 1.48500 * 109.46997 * 59.99800 * 21 19 18 23 23 H 1.48499 * 109.47007 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47165 * 299.99694 * 21 19 18 25 25 H 1.09006 * 109.47258 * 295.77012 * 1 2 3 26 26 H 1.08997 * 109.47454 * 55.77599 * 1 2 3 27 27 H 1.09007 * 109.47095 * 175.77944 * 1 2 3 28 28 H 1.08993 * 109.47062 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47195 * 300.00139 * 3 2 1 30 30 H 1.09003 * 109.47373 * 60.00184 * 3 2 1 31 31 H 1.08997 * 109.47148 * 305.08064 * 4 2 1 32 32 H 1.09006 * 109.46931 * 65.07695 * 4 2 1 33 33 H 1.08995 * 109.46993 * 185.07697 * 4 2 1 34 34 H 1.09006 * 109.47034 * 306.60053 * 5 2 1 35 35 H 1.08997 * 109.47429 * 186.60144 * 5 2 1 36 36 H 1.07997 * 119.96242 * 0.02562 * 8 7 6 37 37 H 1.08002 * 120.02816 * 180.23212 * 9 8 7 38 38 H 1.07997 * 120.06071 * 359.97438 * 12 11 10 39 39 H 1.08008 * 119.93372 * 180.27478 * 13 12 11 40 40 H 1.08002 * 119.87710 * 179.74521 * 14 13 12 41 41 H 1.08001 * 119.93931 * 179.97438 * 15 14 13 42 42 H 1.07997 * 120.06294 * 180.02562 * 16 15 14 43 43 H 1.07998 * 120.03543 * 179.97438 * 17 10 9 44 44 H 1.08998 * 109.46844 * 224.98422 * 19 18 17 45 45 H 0.96697 * 114.00407 * 60.00119 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4841 -0.8782 1.5211 6 8 2.1384 -2.2628 1.4463 7 6 0.8524 -2.5939 1.7342 8 6 -0.0236 -1.6254 2.2050 9 6 -1.3307 -1.9576 2.4935 10 6 -1.7691 -3.2692 2.3217 11 6 -3.1731 -3.6309 2.6365 12 6 -3.6142 -4.9410 2.4601 13 6 -4.9197 -5.2730 2.7601 14 6 -5.7930 -4.3059 3.2241 15 6 -5.3621 -3.0027 3.3957 16 6 -4.0573 -2.6605 3.1039 17 6 -0.8858 -4.2408 1.8538 18 6 0.4185 -3.9016 1.5619 19 6 1.3742 -4.9515 1.0565 20 8 1.5837 -4.7696 -0.3453 21 14 0.6569 -6.6434 1.3629 22 1 -0.6389 -6.7684 0.6484 23 1 1.5990 -7.6779 0.8655 24 1 0.4392 -6.8323 2.8197 25 1 -0.3634 0.4468 0.9255 26 1 -0.3634 0.5780 -0.8497 27 1 -0.3634 -1.0249 -0.0756 28 1 3.5739 1.7564 -0.0005 29 1 2.1206 2.2703 -0.8900 30 1 2.1207 2.2703 0.8900 31 1 2.0483 -1.8763 -1.5678 32 1 2.1968 -0.3146 -2.4088 33 1 3.5701 -0.9577 -1.4768 34 1 2.0275 -0.4371 2.4072 35 1 3.5676 -0.7771 1.5822 36 1 0.3178 -0.6100 2.3415 37 1 -2.0128 -1.2028 2.8563 38 1 -2.9345 -5.6958 2.0932 39 1 -5.2614 -6.2891 2.6279 40 1 -6.8149 -4.5693 3.4537 41 1 -6.0483 -2.2514 3.7579 42 1 -3.7218 -1.6428 3.2386 43 1 -1.2226 -5.2582 1.7200 44 1 2.3253 -4.8597 1.5810 45 1 1.9563 -3.9084 -0.5788 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2516928_3095236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:46:02 Heat of formation + Delta-G solvation = -44.318827 kcal Electronic energy + Delta-G solvation = -24621.357293 eV Core-core repulsion = 21307.085200 eV Total energy + Delta-G solvation = -3314.272093 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.63019 -40.10854 -38.39628 -37.48779 -33.38469 -32.99035 -31.78546 -29.70718 -29.59729 -28.39026 -28.29372 -27.62313 -26.75947 -24.21321 -23.85103 -22.30395 -21.52396 -19.39570 -18.30268 -17.98369 -17.39342 -16.93877 -16.72924 -16.14143 -15.70622 -15.48029 -15.36074 -15.13077 -14.68867 -14.48072 -14.29434 -14.13956 -14.04518 -13.84483 -13.79536 -13.56197 -13.32990 -13.27238 -13.17755 -13.07188 -12.89277 -12.74520 -12.40163 -12.27093 -12.07416 -11.99538 -11.76030 -11.14682 -11.07034 -10.86915 -10.82231 -10.76099 -9.98304 -9.95705 -9.89689 -8.61042 -0.28975 0.19719 0.45889 0.89075 1.14811 1.43549 1.45387 1.59752 1.78831 1.86754 1.88732 2.43932 2.52597 2.61064 3.05542 3.49896 3.60617 3.67958 3.91153 4.01184 4.04052 4.10202 4.16037 4.30178 4.30829 4.38086 4.47532 4.57220 4.66343 4.75449 4.79289 4.79616 4.82739 4.83996 4.84525 4.84778 4.90245 4.96297 5.11609 5.20834 5.22088 5.28779 5.51284 5.55277 5.59267 5.62901 5.64531 5.67404 5.72819 6.05395 6.35423 6.64181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.057 2.943 3 C -0.458 4.458 4 C -0.463 4.463 5 C -0.264 4.264 6 O -0.301 6.301 7 C 0.133 3.867 8 C -0.196 4.196 9 C -0.069 4.069 10 C -0.089 4.089 11 C -0.054 4.054 12 C -0.135 4.135 13 C -0.125 4.125 14 C -0.130 4.130 15 C -0.123 4.123 16 C -0.122 4.122 17 C -0.092 4.092 18 C -0.157 4.157 19 C -0.083 4.083 20 O -0.550 6.550 21 Si 1.021 2.979 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.242 1.242 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.124 0.876 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.131 0.869 44 H 0.085 0.915 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.022 4.457 1.646 4.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.249 2.751 3 C -0.566 4.566 4 C -0.570 4.570 5 C -0.383 4.383 6 O -0.213 6.213 7 C 0.087 3.913 8 C -0.214 4.214 9 C -0.087 4.087 10 C -0.089 4.089 11 C -0.054 4.054 12 C -0.153 4.153 13 C -0.143 4.143 14 C -0.148 4.148 15 C -0.140 4.140 16 C -0.140 4.140 17 C -0.109 4.109 18 C -0.158 4.158 19 C -0.192 4.192 20 O -0.357 6.357 21 Si 0.842 3.158 22 H -0.184 1.184 23 H -0.192 1.192 24 H -0.165 1.165 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.141 0.859 36 H 0.179 0.821 37 H 0.168 0.832 38 H 0.142 0.858 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.148 0.852 44 H 0.103 0.897 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.409 2.909 1.753 3.421 hybrid contribution 0.404 1.079 -0.097 1.156 sum -0.005 3.989 1.656 4.319 Atomic orbital electron populations 1.26675 1.21396 1.04160 1.05009 0.78810 0.65982 0.65595 0.64712 1.26166 1.06784 1.18514 1.05106 1.26267 1.06647 1.08193 1.15894 1.28549 1.08019 0.84702 1.17033 1.85973 1.23789 1.28004 1.83577 1.18957 0.84529 0.92982 0.94856 1.21553 0.94266 1.00743 1.04850 1.21285 0.95593 0.95297 0.96502 1.18731 0.92663 0.94174 1.03379 1.18899 0.92425 0.94131 0.99915 1.21433 0.96904 0.95976 1.01022 1.21380 0.93322 1.00676 0.98895 1.21554 1.00668 0.93420 0.99150 1.21436 0.96029 0.97150 0.99414 1.21473 0.93593 0.99701 0.99230 1.21093 0.92060 0.99864 0.97932 1.19567 0.95462 0.93860 1.06958 1.25187 1.01084 1.08339 0.84564 1.86658 1.86758 1.40980 1.21312 0.84399 0.78863 0.72518 0.80053 1.18404 1.19207 1.16540 0.90081 0.91198 0.92080 0.90668 0.90910 0.90435 0.91572 0.91252 0.90815 0.89746 0.85916 0.82057 0.83244 0.85841 0.84359 0.84200 0.83852 0.84047 0.85152 0.89682 0.77523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.80 7.03 113.37 0.80 2.60 16 2 Si 1.06 -7.57 11.67 68.60 0.80 -6.77 16 3 C -0.46 3.03 8.65 113.37 0.98 4.02 16 4 C -0.46 1.54 8.65 113.37 0.98 2.52 16 5 C -0.26 1.43 5.31 113.37 0.60 2.03 16 6 O -0.30 -0.14 8.68 -92.16 -0.80 -0.94 16 7 C 0.13 0.34 5.72 22.56 0.13 0.47 16 8 C -0.20 0.04 5.59 22.33 0.12 0.17 16 9 C -0.07 -0.07 9.42 22.46 0.21 0.14 16 10 C -0.09 -0.43 5.88 -20.03 -0.12 -0.55 16 11 C -0.05 -0.27 5.88 -20.04 -0.12 -0.39 16 12 C -0.14 -0.68 9.43 22.49 0.21 -0.47 16 13 C -0.12 -0.36 10.03 22.24 0.22 -0.13 16 14 C -0.13 -0.19 10.04 22.31 0.22 0.03 16 15 C -0.12 -0.13 10.03 22.24 0.22 0.09 16 16 C -0.12 -0.27 9.43 22.49 0.21 -0.06 16 17 C -0.09 -0.54 8.03 22.47 0.18 -0.36 16 18 C -0.16 -0.81 5.27 -19.80 -0.10 -0.91 16 19 C -0.08 -0.38 2.33 71.24 0.17 -0.21 16 20 O -0.55 -3.21 12.65 -148.98 -1.89 -5.09 16 21 Si 1.02 4.37 25.74 68.60 1.77 6.14 16 22 H -0.26 -1.39 6.73 99.48 0.67 -0.72 16 23 H -0.27 -1.63 7.11 99.48 0.71 -0.93 16 24 H -0.24 -0.77 7.11 99.48 0.71 -0.06 16 25 H 0.08 -0.48 6.51 -2.38 -0.02 -0.50 16 26 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 27 H 0.06 -0.01 6.51 -2.38 -0.02 -0.02 16 28 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 29 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 30 H 0.08 -0.58 7.96 -2.39 -0.02 -0.60 16 31 H 0.07 -0.12 7.44 -2.39 -0.02 -0.14 16 32 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 33 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 34 H 0.08 -0.64 6.07 -2.38 -0.01 -0.65 16 35 H 0.12 -0.97 7.96 -2.39 -0.02 -0.99 16 36 H 0.16 -0.92 4.21 -2.91 -0.01 -0.94 16 37 H 0.15 -0.55 6.20 -2.91 -0.02 -0.57 16 38 H 0.12 0.42 6.20 -2.91 -0.02 0.41 16 39 H 0.14 -0.14 8.06 -2.91 -0.02 -0.16 16 40 H 0.14 -0.38 8.06 -2.91 -0.02 -0.40 16 41 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 42 H 0.14 -0.34 6.20 -2.91 -0.02 -0.36 16 43 H 0.13 0.63 3.02 -2.91 -0.01 0.62 16 44 H 0.09 0.21 7.82 -2.39 -0.02 0.19 16 45 H 0.38 0.48 8.08 -74.06 -0.60 -0.12 16 Total: 0.00 -11.81 354.60 5.93 -5.87 By element: Atomic # 1 Polarization: -9.32 SS G_CDS: 1.12 Total: -8.20 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 4.93 Total: 8.99 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -2.69 Total: -6.03 kcal Atomic # 14 Polarization: -3.20 SS G_CDS: 2.57 Total: -0.63 kcal Total: -11.81 5.93 -5.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2516928_3095236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.445 kcal (2) G-P(sol) polarization free energy of solvation -11.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds