Wall clock time and date at job start Tue Mar 9 2021 15:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47318 * 2 1 4 4 C 1.53002 * 109.47097 * 239.99902 * 2 1 3 5 5 Si 1.86303 * 109.47289 * 120.00098 * 2 1 3 6 6 C 1.86298 * 109.47090 * 300.00208 * 5 2 1 7 7 C 1.86298 * 109.47416 * 179.97438 * 5 2 1 8 8 O 1.63109 * 109.46889 * 59.99760 * 5 2 1 9 9 C 1.42899 * 113.99667 * 180.02562 * 8 5 2 10 10 O 1.42899 * 109.46961 * 180.02562 * 9 8 5 11 11 C 1.35893 * 117.00392 * 74.99664 * 10 9 8 12 12 C 1.38736 * 120.05957 * 180.02562 * 11 10 9 13 13 C 1.38138 * 119.94337 * 180.30421 * 12 11 10 14 14 C 1.38270 * 120.05794 * 359.46080 * 13 12 11 15 15 C 1.50697 * 119.94421 * 180.26220 * 14 13 12 16 16 O 1.42906 * 109.46937 * 245.25362 * 15 14 13 17 17 Si 1.86302 * 109.47317 * 5.25234 * 15 14 13 18 18 H 1.48492 * 109.47238 * 300.00423 * 17 15 14 19 19 H 1.48501 * 109.46902 * 60.00145 * 17 15 14 20 20 H 1.48499 * 109.47319 * 179.97438 * 17 15 14 21 21 C 1.38259 * 120.10998 * 0.51383 * 14 13 12 22 22 C 1.38146 * 120.05869 * 359.76954 * 21 14 13 23 23 H 1.09001 * 109.47324 * 299.99849 * 1 2 3 24 24 H 1.09000 * 109.47154 * 60.00154 * 1 2 3 25 25 H 1.09004 * 109.47260 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47070 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46882 * 300.00012 * 3 2 1 28 28 H 1.09001 * 109.46800 * 59.99830 * 3 2 1 29 29 H 1.09004 * 109.47268 * 300.00243 * 4 2 1 30 30 H 1.09000 * 109.47165 * 59.99950 * 4 2 1 31 31 H 1.08995 * 109.47288 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47363 * 180.02562 * 6 5 2 33 33 H 1.09004 * 109.46942 * 299.99631 * 6 5 2 34 34 H 1.09001 * 109.47170 * 59.99415 * 6 5 2 35 35 H 1.09003 * 109.47064 * 300.00558 * 7 5 2 36 36 H 1.09004 * 109.46629 * 59.99739 * 7 5 2 37 37 H 1.09000 * 109.47281 * 179.97438 * 7 5 2 38 38 H 1.08993 * 109.47483 * 59.99828 * 9 8 5 39 39 H 1.09000 * 109.47196 * 299.99731 * 9 8 5 40 40 H 1.08002 * 120.02291 * 0.02562 * 12 11 10 41 41 H 1.08004 * 119.96766 * 179.69880 * 13 12 11 42 42 H 1.09001 * 109.47205 * 125.25472 * 15 14 13 43 43 H 0.96703 * 113.99842 * 179.97438 * 16 15 14 44 44 H 1.08006 * 119.97187 * 179.74376 * 21 14 13 45 45 H 1.07993 * 120.03340 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8790 1.5208 8 8 1.6073 -2.4160 1.5211 9 6 2.0285 -3.1814 2.6519 10 8 1.5009 -4.5059 2.5539 11 6 2.0896 -5.3397 1.6567 12 6 1.6277 -6.6395 1.5091 13 6 2.2319 -7.4870 0.6009 14 6 3.2891 -7.0374 -0.1687 15 6 3.9425 -7.9624 -1.1630 16 8 5.2911 -8.2151 -0.7634 17 14 3.0023 -9.5694 -1.2272 18 1 3.0102 -10.2016 0.1164 19 1 1.6009 -9.3067 -1.6424 20 1 3.6458 -10.4806 -2.2074 21 6 3.7509 -5.7423 -0.0239 22 6 3.1539 -4.8926 0.8871 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 -1.7490 -1.2493 30 1 1.6766 -0.2075 -2.1392 31 1 3.1299 -0.7209 -1.2495 32 1 1.8937 -0.5137 3.9323 33 1 1.8934 1.0276 3.0423 34 1 0.4400 -0.0001 3.0422 35 1 4.3770 -1.3930 0.6307 36 1 4.3776 0.1486 1.5205 37 1 4.3773 -1.3924 2.4110 38 1 1.6638 -2.7113 3.5651 39 1 3.1173 -3.2253 2.6758 40 1 0.7993 -6.9898 2.1070 41 1 1.8758 -8.5005 0.4891 42 1 3.9367 -7.4983 -2.1492 43 1 5.7737 -8.8049 -1.3588 44 1 4.5795 -5.3948 -0.6233 45 1 3.5153 -3.8812 1.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26799_14468166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:46:54 Heat of formation + Delta-G solvation = -146.339987 kcal Electronic energy + Delta-G solvation = -22927.693461 eV Core-core repulsion = 19647.682150 eV Total energy + Delta-G solvation = -3280.011312 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.156 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.25444 -39.29320 -37.50782 -36.91332 -36.69757 -32.00320 -31.85123 -29.61133 -29.20530 -27.93566 -27.46914 -27.41170 -25.81117 -23.69531 -22.05694 -20.52958 -19.40766 -18.47156 -18.39710 -17.69573 -16.77909 -16.31226 -16.13509 -15.97694 -15.27969 -15.04183 -14.92641 -14.86542 -14.66164 -14.41903 -14.26599 -14.07431 -13.84263 -13.71066 -13.58473 -13.53582 -13.36638 -13.00549 -12.99653 -12.57900 -12.47487 -12.33397 -12.15020 -12.05067 -11.92845 -11.82022 -11.67470 -11.65455 -11.47382 -10.55116 -10.29663 -10.17285 -9.90058 -9.10662 0.37344 0.47315 1.18037 1.19434 1.45904 1.52757 1.56815 1.88920 1.93145 2.09635 2.46558 2.76319 3.48501 3.65881 3.84151 3.91763 4.00577 4.04357 4.05477 4.06035 4.32979 4.39607 4.40290 4.53184 4.56513 4.59153 4.61160 4.62464 4.72068 4.74744 4.79895 4.94210 4.97551 5.04760 5.05040 5.09387 5.17026 5.27148 5.28667 5.34362 5.41960 5.43725 5.44687 5.49973 5.61775 5.77113 6.39443 6.61059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.372 4.372 3 C -0.137 4.137 4 C -0.135 4.135 5 Si 1.292 2.708 6 C -0.513 4.513 7 C -0.515 4.515 8 O -0.645 6.645 9 C 0.248 3.752 10 O -0.298 6.298 11 C 0.135 3.865 12 C -0.143 4.143 13 C -0.086 4.086 14 C -0.112 4.112 15 C -0.077 4.077 16 O -0.546 6.546 17 Si 0.944 3.056 18 H -0.247 1.247 19 H -0.249 1.249 20 H -0.258 1.258 21 C -0.051 4.051 22 C -0.195 4.195 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.074 0.926 43 H 0.379 0.621 44 H 0.128 0.872 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 1.072 -0.540 1.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.416 4.416 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.424 2.576 6 C -0.615 4.615 7 C -0.617 4.617 8 O -0.605 6.605 9 C 0.136 3.864 10 O -0.212 6.212 11 C 0.091 3.909 12 C -0.162 4.162 13 C -0.103 4.103 14 C -0.113 4.113 15 C -0.187 4.187 16 O -0.352 6.352 17 Si 0.767 3.233 18 H -0.171 1.171 19 H -0.173 1.173 20 H -0.182 1.182 21 C -0.070 4.070 22 C -0.214 4.214 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.127 0.873 39 H 0.081 0.919 40 H 0.154 0.846 41 H 0.144 0.856 42 H 0.092 0.908 43 H 0.226 0.774 44 H 0.146 0.854 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.280 0.460 -0.089 0.546 hybrid contribution 0.766 0.732 -0.433 1.144 sum 1.046 1.191 -0.522 1.669 Atomic orbital electron populations 1.21520 0.93684 1.02124 1.01883 1.25745 1.00796 1.02601 1.12436 1.21563 1.00783 0.94815 1.02272 1.21519 1.00577 1.00307 0.96777 0.76571 0.62983 0.52443 0.65582 1.27038 1.07346 1.09764 1.17371 1.27071 1.24744 1.05278 1.04607 1.85327 1.79875 1.46536 1.48772 1.23407 0.96288 0.78609 0.88120 1.86249 1.58741 1.21380 1.54836 1.18996 0.91896 0.90189 0.89861 1.20338 1.02739 0.91408 1.01680 1.20785 0.95718 0.99046 0.94791 1.19142 0.97720 0.94801 0.99611 1.24663 0.88700 1.06916 0.98431 1.86516 1.23431 1.71156 1.54049 0.85785 0.79827 0.76433 0.81263 1.17099 1.17252 1.18200 1.20769 0.97702 0.92259 0.96236 1.21294 0.98670 1.01192 1.00195 0.92643 0.92684 0.92103 0.92474 0.92369 0.92465 0.92126 0.92678 0.92681 0.91390 0.90355 0.90542 0.90642 0.90213 0.91382 0.87340 0.91915 0.84639 0.85624 0.90763 0.77399 0.85363 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.01 7.85 37.16 0.29 0.30 16 2 C -0.37 0.26 0.53 -90.62 -0.05 0.21 16 3 C -0.14 0.16 7.85 37.16 0.29 0.45 16 4 C -0.13 0.03 7.85 37.16 0.29 0.32 16 5 Si 1.29 -2.20 8.45 -169.99 -1.44 -3.64 16 6 C -0.51 0.82 8.50 101.05 0.86 1.67 16 7 C -0.52 0.90 8.50 101.05 0.86 1.76 16 8 O -0.64 -0.23 8.04 -59.04 -0.47 -0.71 16 9 C 0.25 -0.05 5.42 101.05 0.55 0.49 16 10 O -0.30 -0.77 10.40 -43.22 -0.45 -1.22 16 11 C 0.14 0.40 6.63 -39.21 -0.26 0.14 16 12 C -0.14 -0.35 9.99 -39.43 -0.39 -0.75 16 13 C -0.09 -0.18 8.66 -39.61 -0.34 -0.53 16 14 C -0.11 -0.25 5.38 -104.60 -0.56 -0.81 16 15 C -0.08 -0.01 2.79 36.00 0.10 0.09 16 16 O -0.55 -0.31 12.81 -35.23 -0.45 -0.76 16 17 Si 0.94 -0.16 25.14 -169.99 -4.27 -4.43 16 18 H -0.25 -0.27 7.03 56.52 0.40 0.12 16 19 H -0.25 -0.12 7.11 56.52 0.40 0.29 16 20 H -0.26 0.03 7.11 56.52 0.40 0.43 16 21 C -0.05 -0.11 9.68 -39.61 -0.38 -0.49 16 22 C -0.19 -0.41 8.78 -39.43 -0.35 -0.76 16 23 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 24 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 25 H 0.06 0.03 7.97 -51.93 -0.41 -0.38 16 26 H 0.06 -0.11 7.79 -51.93 -0.40 -0.51 16 27 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 28 H 0.06 -0.10 7.79 -51.93 -0.40 -0.51 16 29 H 0.06 0.03 7.97 -51.93 -0.41 -0.39 16 30 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 31 H 0.05 -0.05 7.79 -51.93 -0.40 -0.46 16 32 H 0.07 -0.15 7.48 -51.93 -0.39 -0.54 16 33 H 0.08 -0.15 7.79 -51.93 -0.40 -0.55 16 34 H 0.08 -0.09 7.79 -51.93 -0.40 -0.49 16 35 H 0.07 -0.11 7.79 -51.93 -0.40 -0.52 16 36 H 0.08 -0.16 7.79 -51.93 -0.40 -0.56 16 37 H 0.07 -0.15 7.48 -51.93 -0.39 -0.54 16 38 H 0.11 -0.30 7.21 -51.93 -0.37 -0.67 16 39 H 0.06 -0.13 5.77 -51.93 -0.30 -0.43 16 40 H 0.14 0.13 8.06 -52.49 -0.42 -0.30 16 41 H 0.13 0.08 4.86 -52.48 -0.25 -0.18 16 42 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 43 H 0.38 -1.46 8.74 45.56 0.40 -1.06 16 44 H 0.13 0.08 8.06 -52.48 -0.42 -0.34 16 45 H 0.13 0.05 5.86 -52.49 -0.31 -0.26 16 LS Contribution 358.64 15.07 5.40 5.40 Total: 0.00 -5.58 358.64 -7.78 -13.36 By element: Atomic # 1 Polarization: -3.10 SS G_CDS: -7.01 Total: -10.11 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 0.90 Total: 2.10 kcal Atomic # 8 Polarization: -1.32 SS G_CDS: -1.38 Total: -2.69 kcal Atomic # 14 Polarization: -2.36 SS G_CDS: -5.71 Total: -8.07 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -5.58 -7.78 -13.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26799_14468166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.976 kcal (2) G-P(sol) polarization free energy of solvation -5.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds