Wall clock time and date at job start Tue Mar 9 2021 15:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47092 * 2 1 4 4 C 1.52993 * 109.47087 * 239.99857 * 2 1 3 5 5 Si 1.86300 * 109.46929 * 120.00051 * 2 1 3 6 6 C 1.86305 * 109.47285 * 299.99780 * 5 2 1 7 7 C 1.86299 * 109.47012 * 180.02562 * 5 2 1 8 8 O 1.63095 * 109.47379 * 59.99835 * 5 2 1 9 9 C 1.42899 * 114.00367 * 179.97438 * 8 5 2 10 10 C 1.52995 * 109.47325 * 180.02562 * 9 8 5 11 11 O 1.42900 * 109.47118 * 64.99923 * 10 9 8 12 12 C 1.42904 * 113.99657 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.46768 * 180.02562 * 12 11 10 14 14 O 1.42899 * 109.47433 * 65.00151 * 13 12 11 15 15 C 1.35893 * 117.00392 * 179.97438 * 14 13 12 16 16 C 1.38736 * 120.05957 * 180.02562 * 15 14 13 17 17 C 1.38138 * 119.94337 * 180.30421 * 16 15 14 18 18 C 1.38270 * 120.05794 * 359.46080 * 17 16 15 19 19 C 1.50697 * 119.94421 * 180.26220 * 18 17 16 20 20 O 1.42906 * 109.46937 * 245.25362 * 19 18 17 21 21 Si 1.86302 * 109.47317 * 5.25234 * 19 18 17 22 22 H 1.48499 * 109.47319 * 179.97438 * 21 19 18 23 23 H 1.48492 * 109.47238 * 300.00423 * 21 19 18 24 24 H 1.48501 * 109.46902 * 60.00145 * 21 19 18 25 25 C 1.38259 * 120.10998 * 0.51383 * 18 17 16 26 26 C 1.38146 * 120.05869 * 359.76954 * 25 18 17 27 27 H 1.09002 * 109.47010 * 299.99910 * 1 2 3 28 28 H 1.08997 * 109.46837 * 59.99893 * 1 2 3 29 29 H 1.09001 * 109.46825 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47192 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47367 * 299.99783 * 3 2 1 32 32 H 1.09002 * 109.47119 * 60.00158 * 3 2 1 33 33 H 1.09001 * 109.47536 * 299.99868 * 4 2 1 34 34 H 1.09004 * 109.47320 * 60.00105 * 4 2 1 35 35 H 1.09001 * 109.46907 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.47285 * 179.97438 * 6 5 2 37 37 H 1.08998 * 109.46743 * 300.00553 * 6 5 2 38 38 H 1.09001 * 109.46777 * 60.00250 * 6 5 2 39 39 H 1.08995 * 109.47177 * 299.99857 * 7 5 2 40 40 H 1.09002 * 109.47437 * 59.99770 * 7 5 2 41 41 H 1.09006 * 109.47509 * 179.97438 * 7 5 2 42 42 H 1.08998 * 109.47136 * 59.99950 * 9 8 5 43 43 H 1.09004 * 109.46899 * 300.00310 * 9 8 5 44 44 H 1.08993 * 109.46910 * 304.99957 * 10 9 8 45 45 H 1.09003 * 109.46823 * 184.99674 * 10 9 8 46 46 H 1.08997 * 109.47038 * 60.00359 * 12 11 10 47 47 H 1.09001 * 109.47414 * 299.99870 * 12 11 10 48 48 H 1.09002 * 109.47184 * 305.00405 * 13 12 11 49 49 H 1.09001 * 109.46987 * 185.00111 * 13 12 11 50 50 H 1.08002 * 120.02291 * 0.02562 * 16 15 14 51 51 H 1.08004 * 119.96766 * 179.69880 * 17 16 15 52 52 H 1.09001 * 109.47205 * 125.25472 * 19 18 17 53 53 H 0.96703 * 113.99842 * 179.97438 * 20 19 18 54 54 H 1.08006 * 119.97187 * 179.74376 * 25 18 17 55 55 H 1.07993 * 120.03340 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8776 1.5216 8 8 1.6073 -2.4159 1.5212 9 6 2.0294 -3.1817 2.6514 10 6 1.4645 -4.5996 2.5465 11 8 2.0329 -5.2561 1.4116 12 6 1.5696 -6.5946 1.2220 13 6 2.2410 -7.1963 -0.0142 14 8 3.6466 -7.3118 0.2158 15 6 4.3959 -7.8326 -0.7911 16 6 5.7673 -7.9738 -0.6355 17 6 6.5275 -8.4977 -1.6631 18 6 5.9213 -8.8915 -2.8418 19 6 6.7523 -9.4681 -3.9589 20 8 6.7130 -8.5888 -5.0846 21 14 8.5140 -9.6639 -3.3851 22 1 9.3327 -10.2328 -4.4857 23 1 9.0583 -8.3381 -2.9968 24 1 8.5548 -10.5777 -2.2153 25 6 4.5548 -8.7523 -2.9992 26 6 3.7908 -8.2236 -1.9768 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 1.8930 -0.5141 3.9323 37 1 1.8934 1.0276 3.0422 38 1 0.4400 0.0000 3.0423 39 1 4.3777 -1.3911 0.6316 40 1 4.3770 0.1502 1.5218 41 1 4.3774 -1.3910 2.4118 42 1 1.6653 -2.7118 3.5651 43 1 3.1183 -3.2255 2.6745 44 1 0.3814 -4.5518 2.4339 45 1 1.7117 -5.1569 3.4501 46 1 0.4887 -6.5885 1.0821 47 1 1.8193 -7.1931 2.0981 48 1 2.0655 -6.5496 -0.8739 49 1 1.8227 -8.1835 -0.2105 50 1 6.2406 -7.6702 0.2866 51 1 7.5957 -8.6033 -1.5442 52 1 6.3527 -10.4414 -4.2439 53 1 7.2278 -8.8973 -5.8429 54 1 4.0842 -9.0568 -3.9224 55 1 2.7235 -8.1146 -2.1004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26799_16896866.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:51:02 Heat of formation + Delta-G solvation = -186.152982 kcal Electronic energy + Delta-G solvation = -29860.142082 eV Core-core repulsion = 25793.109301 eV Total energy + Delta-G solvation = -4067.032782 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.202 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24412 -39.47860 -38.80948 -37.48387 -37.09737 -36.82992 -32.60290 -32.10011 -31.23850 -29.70484 -29.19671 -29.06668 -27.84239 -27.38819 -26.25741 -24.76893 -23.45494 -23.08281 -22.00635 -20.41969 -19.43559 -18.44233 -18.10755 -17.93677 -17.26065 -16.87663 -16.53433 -16.42126 -16.23230 -16.01166 -15.66858 -15.41414 -15.33015 -14.85488 -14.80470 -14.68219 -14.49709 -14.30355 -13.97666 -13.92919 -13.76985 -13.58455 -13.48126 -13.37609 -13.18793 -12.96560 -12.95732 -12.93009 -12.66165 -12.45436 -12.39169 -12.31687 -12.05885 -11.96182 -11.82770 -11.78447 -11.68469 -11.63046 -11.49246 -11.18891 -10.55779 -10.30108 -10.27576 -10.05293 -10.05173 -9.16974 0.25379 0.33748 1.18781 1.46113 1.51387 1.54690 1.79838 1.91912 2.13687 2.16802 2.49445 2.63236 2.70004 3.52244 3.75088 3.83579 3.95665 3.98535 4.09881 4.11572 4.12075 4.15002 4.23613 4.26146 4.32022 4.35110 4.42860 4.46003 4.49254 4.58443 4.59789 4.62354 4.71145 4.73713 4.74822 4.78468 4.79485 4.80889 4.82953 4.83941 4.98452 4.99054 5.08315 5.08825 5.17742 5.19767 5.31192 5.33105 5.40028 5.43670 5.49281 5.52944 5.58561 5.63736 5.70515 6.27103 6.41022 6.84881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.382 4.382 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.312 2.688 6 C -0.512 4.512 7 C -0.520 4.520 8 O -0.636 6.636 9 C 0.074 3.926 10 C 0.053 3.947 11 O -0.401 6.401 12 C 0.059 3.941 13 C 0.054 3.946 14 O -0.323 6.323 15 C 0.123 3.877 16 C -0.162 4.162 17 C -0.094 4.094 18 C -0.130 4.130 19 C -0.075 4.075 20 O -0.564 6.564 21 Si 0.974 3.026 22 H -0.254 1.254 23 H -0.273 1.273 24 H -0.258 1.258 25 C -0.057 4.057 26 C -0.212 4.212 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.101 0.899 50 H 0.138 0.862 51 H 0.133 0.867 52 H 0.096 0.904 53 H 0.397 0.603 54 H 0.142 0.858 55 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.097 -2.475 1.564 3.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.424 4.424 3 C -0.197 4.197 4 C -0.193 4.193 5 Si 1.441 2.559 6 C -0.615 4.615 7 C -0.621 4.621 8 O -0.595 6.595 9 C -0.001 4.001 10 C -0.023 4.023 11 O -0.321 6.321 12 C -0.017 4.017 13 C -0.020 4.020 14 O -0.237 6.237 15 C 0.077 3.923 16 C -0.180 4.180 17 C -0.111 4.111 18 C -0.130 4.130 19 C -0.186 4.186 20 O -0.373 6.373 21 Si 0.799 3.201 22 H -0.178 1.178 23 H -0.198 1.198 24 H -0.182 1.182 25 C -0.075 4.075 26 C -0.231 4.231 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.112 0.888 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.119 0.881 50 H 0.156 0.844 51 H 0.151 0.849 52 H 0.114 0.886 53 H 0.247 0.753 54 H 0.160 0.840 55 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.588 -2.268 2.156 3.508 hybrid contribution -0.047 0.179 -0.500 0.533 sum -1.634 -2.088 1.656 3.126 Atomic orbital electron populations 1.21523 0.93979 1.01723 1.01964 1.25897 1.00613 1.02984 1.12932 1.21598 1.01119 0.94645 1.02356 1.21515 1.00699 0.99897 0.97146 0.76281 0.62031 0.53033 0.64513 1.27018 1.07031 1.09750 1.17671 1.27163 1.26196 1.04665 1.04073 1.85384 1.79201 1.46524 1.48427 1.22309 0.99274 0.90755 0.87728 1.22835 0.98431 0.92101 0.88910 1.87995 1.68610 1.26789 1.48694 1.22688 0.98463 0.83360 0.97192 1.23118 0.78088 1.01705 0.99114 1.86106 1.21036 1.77871 1.38708 1.19217 0.91506 0.93638 0.87912 1.20527 0.91203 1.05132 1.01185 1.20979 0.99789 0.97308 0.93068 1.19467 0.94751 1.03963 0.94853 1.24677 1.09572 0.95728 0.88577 1.86473 1.75887 1.49192 1.25778 0.85356 0.74931 0.79469 0.80307 1.17802 1.19813 1.18232 1.21016 0.92849 0.95318 0.98275 1.21529 1.01724 1.05981 0.93830 0.91761 0.93324 0.92655 0.92130 0.93065 0.91499 0.92934 0.93202 0.92675 0.90769 0.90326 0.90771 0.92050 0.90416 0.91277 0.88749 0.92049 0.91515 0.90262 0.88847 0.91512 0.91228 0.88129 0.84381 0.84904 0.88644 0.75267 0.83994 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.22 7.85 71.98 0.56 0.35 16 2 C -0.38 -0.60 0.53 -10.79 -0.01 -0.61 16 3 C -0.14 -0.04 7.85 71.98 0.56 0.52 16 4 C -0.14 -0.52 7.85 71.98 0.56 0.05 16 5 Si 1.31 -0.29 8.45 68.60 0.58 0.29 16 6 C -0.51 0.92 8.50 113.37 0.96 1.88 16 7 C -0.52 -0.91 8.50 113.37 0.96 0.05 16 8 O -0.64 -1.98 8.52 -144.34 -1.23 -3.21 16 9 C 0.07 -0.02 5.50 71.98 0.40 0.38 16 10 C 0.05 -0.02 6.32 71.98 0.45 0.44 16 11 O -0.40 -2.11 10.27 -135.05 -1.39 -3.49 16 12 C 0.06 -0.03 6.32 71.98 0.45 0.42 16 13 C 0.05 0.04 5.12 71.98 0.37 0.41 16 14 O -0.32 -2.37 10.10 -87.71 -0.89 -3.26 16 15 C 0.12 0.90 6.69 22.51 0.15 1.05 16 16 C -0.16 -1.16 9.99 22.37 0.22 -0.94 16 17 C -0.09 -0.55 8.66 22.25 0.19 -0.36 16 18 C -0.13 -0.66 5.38 -19.85 -0.11 -0.76 16 19 C -0.08 -0.02 2.79 71.23 0.20 0.18 16 20 O -0.56 -0.74 12.81 -148.98 -1.91 -2.65 16 21 Si 0.97 0.06 25.14 68.60 1.72 1.78 16 22 H -0.25 0.18 7.11 99.48 0.71 0.89 16 23 H -0.27 -1.10 7.03 99.48 0.70 -0.40 16 24 H -0.26 -0.33 7.11 99.48 0.71 0.38 16 25 C -0.06 -0.24 9.68 22.25 0.22 -0.03 16 26 C -0.21 -0.93 9.04 22.37 0.20 -0.72 16 27 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 28 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.05 0.13 7.97 -2.39 -0.02 0.11 16 30 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 31 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.07 -0.13 7.79 -2.39 -0.02 -0.15 16 33 H 0.05 0.28 7.97 -2.39 -0.02 0.26 16 34 H 0.05 0.20 8.14 -2.38 -0.02 0.18 16 35 H 0.05 0.18 7.79 -2.39 -0.02 0.17 16 36 H 0.07 -0.23 7.48 -2.39 -0.02 -0.25 16 37 H 0.08 -0.18 7.79 -2.39 -0.02 -0.20 16 38 H 0.07 -0.13 7.79 -2.39 -0.02 -0.15 16 39 H 0.06 0.26 7.79 -2.39 -0.02 0.24 16 40 H 0.08 0.03 7.79 -2.39 -0.02 0.01 16 41 H 0.07 0.07 7.48 -2.38 -0.02 0.05 16 42 H 0.09 -0.55 7.21 -2.39 -0.02 -0.57 16 43 H 0.06 -0.01 7.21 -2.39 -0.02 -0.02 16 44 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 46 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 47 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 48 H 0.07 0.10 7.66 -2.39 -0.02 0.08 16 49 H 0.10 -0.43 7.66 -2.39 -0.02 -0.45 16 50 H 0.14 0.70 8.06 -2.91 -0.02 0.67 16 51 H 0.13 0.41 4.86 -2.91 -0.01 0.40 16 52 H 0.10 -0.40 7.96 -2.39 -0.02 -0.42 16 53 H 0.40 -3.16 8.74 -74.06 -0.65 -3.81 16 54 H 0.14 0.12 8.06 -2.91 -0.02 0.09 16 55 H 0.15 -0.05 6.30 -2.91 -0.02 -0.07 16 Total: 0.00 -16.56 437.05 4.20 -12.36 By element: Atomic # 1 Polarization: -5.07 SS G_CDS: 0.94 Total: -4.13 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 6.37 Total: 2.31 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -5.41 Total: -12.61 kcal Atomic # 14 Polarization: -0.23 SS G_CDS: 2.30 Total: 2.07 kcal Total: -16.56 4.20 -12.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26799_16896866.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.792 kcal (2) G-P(sol) polarization free energy of solvation -16.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds