Wall clock time and date at job start Tue Mar 9 2021 15:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00184 * 2 1 4 4 C 1.52996 * 112.85107 * 294.13165 * 3 2 1 5 5 F 1.39904 * 109.47163 * 195.75110 * 4 3 2 6 6 F 1.39895 * 109.46948 * 315.75300 * 4 3 2 7 7 F 1.39898 * 109.46890 * 75.75209 * 4 3 2 8 8 C 1.54052 * 113.61329 * 162.81803 * 3 2 1 9 9 C 1.53775 * 86.98636 * 270.88681 * 8 3 2 10 10 H 1.08998 * 113.61610 * 219.97593 * 9 8 3 11 11 C 1.53002 * 113.61441 * 89.16231 * 9 8 3 12 12 O 1.42898 * 109.47271 * 85.86148 * 11 9 8 13 13 C 1.35904 * 117.00211 * 180.02562 * 12 11 9 14 14 C 1.38730 * 120.05302 * 180.02562 * 13 12 11 15 15 C 1.38147 * 119.93915 * 180.02562 * 14 13 12 16 16 C 1.38268 * 120.05565 * 0.02562 * 15 14 13 17 17 C 1.50708 * 119.94357 * 179.97438 * 16 15 14 18 18 O 1.42904 * 109.46840 * 64.99570 * 17 16 15 19 19 Si 1.86297 * 109.47099 * 184.99661 * 17 16 15 20 20 C 1.38259 * 120.11418 * 0.24815 * 16 15 14 21 21 C 1.38152 * 120.05221 * 359.45342 * 20 16 15 22 22 C 1.53773 * 87.17486 * 334.57117 * 9 8 3 23 23 H 1.08998 * 109.47143 * 303.05963 * 1 2 3 24 24 H 1.09002 * 109.47213 * 63.05598 * 1 2 3 25 25 H 1.09001 * 109.47345 * 183.06332 * 1 2 3 26 26 H 1.09000 * 113.61304 * 156.38149 * 8 3 2 27 27 H 1.09003 * 113.69316 * 25.40493 * 8 3 2 28 28 H 1.08997 * 109.47588 * 325.86035 * 11 9 8 29 29 H 1.09004 * 109.47075 * 205.85963 * 11 9 8 30 30 H 1.07995 * 120.03559 * 0.04120 * 14 13 12 31 31 H 1.07998 * 119.97322 * 179.97438 * 15 14 13 32 32 H 1.08994 * 109.46859 * 305.00336 * 17 16 15 33 33 H 0.96706 * 114.00009 * 60.00086 * 18 17 16 34 34 H 1.48504 * 109.99776 * 58.68125 * 19 17 16 35 35 H 1.48497 * 109.99809 * 179.97438 * 19 17 16 36 36 H 1.07995 * 119.97325 * 179.70815 * 20 16 15 37 37 H 1.07999 * 120.02586 * 180.25104 * 21 20 16 38 38 H 1.09004 * 113.61865 * 140.02670 * 22 9 8 39 39 H 1.09003 * 113.61281 * 270.92924 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7253 2.0827 -1.2867 5 9 2.5970 3.1734 -1.3754 6 9 1.9146 1.2435 -2.3899 7 9 0.4039 2.5418 -1.2712 8 6 3.4932 1.3206 0.4170 9 6 3.0004 1.4807 1.8648 10 1 3.5975 2.1760 2.4549 11 6 2.7581 0.1502 2.5804 12 8 3.9820 -0.3109 3.1560 13 6 3.9405 -1.4890 3.8324 14 6 5.0922 -1.9955 4.4169 15 6 5.0474 -3.1935 5.1034 16 6 3.8562 -3.8878 5.2077 17 6 3.8104 -5.1947 5.9567 18 8 4.0926 -4.9621 7.3381 19 14 2.1150 -5.9483 5.7875 20 6 2.7083 -3.3879 4.6212 21 6 2.7465 -2.1872 3.9388 22 6 1.7235 2.1074 1.2805 23 1 -0.3633 0.5606 0.8613 24 1 -0.3634 0.4657 -0.9161 25 1 -0.3634 -1.0262 0.0549 26 1 4.0426 2.1852 0.0446 27 1 4.0095 0.3784 0.2331 28 1 2.3931 -0.5862 1.8646 29 1 2.0168 0.2906 3.3672 30 1 6.0229 -1.4537 4.3356 31 1 5.9437 -3.5885 5.5583 32 1 4.5539 -5.8763 5.5438 33 1 3.4694 -4.3629 7.7714 34 1 1.7967 -6.1656 4.3533 35 1 2.0570 -7.2380 6.5212 36 1 1.7802 -3.9344 4.7000 37 1 1.8487 -1.7951 3.4843 38 1 0.8121 1.8000 1.7933 39 1 1.7900 3.1867 1.1437 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26799_17321600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:51:14 Heat of formation + Delta-G solvation = -200.538798 kcal Electronic energy + Delta-G solvation = -27567.335755 eV Core-core repulsion = 23028.592861 eV Total energy + Delta-G solvation = -4538.742894 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.20144 -48.74855 -48.63465 -41.83544 -40.94166 -39.07977 -37.41145 -36.91106 -32.37059 -31.74461 -30.49197 -28.39816 -27.54244 -26.95989 -26.08508 -24.19490 -23.15452 -22.24695 -20.69768 -19.89548 -19.50881 -19.27124 -19.17489 -18.21565 -17.43113 -17.10735 -16.83151 -16.60924 -16.49244 -16.03958 -15.81423 -15.63059 -15.57442 -15.52886 -15.20916 -15.09860 -14.83919 -14.80293 -14.63950 -14.40781 -14.31666 -14.02303 -13.79942 -13.57778 -13.41102 -13.19419 -12.84405 -12.48052 -12.33006 -12.07744 -11.99679 -11.86524 -11.81544 -11.64386 -10.92708 -10.40467 -10.02296 -9.16915 -5.05024 0.31537 0.33392 1.30405 1.51342 1.62837 1.91833 1.97408 1.99555 2.49540 2.58415 2.68808 2.80548 3.19097 3.31013 3.41911 3.49567 3.56155 3.71882 3.82140 3.90521 3.99562 4.08021 4.11116 4.19589 4.22399 4.29212 4.31639 4.40617 4.48791 4.51377 4.52029 4.59997 4.66020 4.71041 4.86209 4.96882 5.19415 5.29669 5.51954 5.55239 5.73252 6.37682 6.59148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.333 6.333 3 C 0.038 3.962 4 C 0.437 3.563 5 F -0.174 7.174 6 F -0.174 7.174 7 F -0.182 7.182 8 C -0.111 4.111 9 C -0.098 4.098 10 H 0.106 0.894 11 C 0.069 3.931 12 O -0.311 6.311 13 C 0.139 3.861 14 C -0.151 4.151 15 C -0.052 4.052 16 C -0.159 4.159 17 C -0.063 4.063 18 O -0.541 6.541 19 Si 0.683 3.317 20 C -0.075 4.075 21 C -0.204 4.204 22 C -0.143 4.143 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.102 0.898 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.112 0.888 33 H 0.378 0.622 34 H -0.258 1.258 35 H -0.255 1.255 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 2.233 2.228 4.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.250 6.250 3 C -0.004 4.004 4 C 0.382 3.618 5 F -0.156 7.156 6 F -0.155 7.155 7 F -0.163 7.163 8 C -0.148 4.148 9 C -0.117 4.117 10 H 0.125 0.875 11 C -0.006 4.006 12 O -0.225 6.225 13 C 0.093 3.907 14 C -0.170 4.170 15 C -0.070 4.070 16 C -0.160 4.160 17 C -0.174 4.174 18 O -0.346 6.346 19 Si 0.585 3.415 20 C -0.092 4.092 21 C -0.222 4.222 22 C -0.180 4.180 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.120 0.880 26 H 0.135 0.865 27 H 0.118 0.882 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.226 0.774 34 H -0.183 1.183 35 H -0.180 1.180 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.113 0.887 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.934 1.108 1.735 3.584 hybrid contribution -0.034 0.394 -0.731 0.831 sum -2.968 1.503 1.003 3.474 Atomic orbital electron populations 1.23158 0.79478 1.04386 1.01651 1.88088 1.21144 1.21950 1.93842 1.24110 1.00090 0.86283 0.89942 1.21167 0.74314 0.78739 0.87541 1.93184 1.69490 1.56312 1.96606 1.93222 1.94769 1.70946 1.56585 1.93191 1.36519 1.89761 1.96842 1.23308 0.90784 1.05810 0.94938 1.22070 0.97470 0.96500 0.95639 0.87533 1.22756 0.85301 0.95493 0.97074 1.86035 1.34840 1.35131 1.66450 1.19010 0.94107 0.85393 0.92168 1.20515 0.97267 0.97571 1.01611 1.20840 0.97694 0.93034 0.95463 1.20219 0.94189 0.98687 1.02898 1.24963 1.11840 0.97147 0.83411 1.86505 1.57277 1.70097 1.20766 0.94875 0.80817 0.83318 0.82441 1.20767 0.97167 0.95056 0.96228 1.21192 0.97584 0.97703 1.05767 1.23590 0.99578 1.01174 0.93651 0.92585 0.92728 0.87954 0.86517 0.88240 0.89746 0.91434 0.84879 0.84977 0.87066 0.77433 1.18325 1.17998 0.85450 0.85101 0.88680 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 10.33 101.05 1.04 1.02 16 2 O -0.33 0.14 8.34 -35.23 -0.29 -0.16 16 3 C 0.04 -0.04 0.85 -89.67 -0.08 -0.12 16 4 C 0.44 0.30 2.52 37.16 0.09 0.40 16 5 F -0.17 -0.15 15.82 2.25 0.04 -0.11 16 6 F -0.17 -0.45 17.11 2.25 0.04 -0.41 16 7 F -0.18 -0.17 15.34 2.25 0.03 -0.13 16 8 C -0.11 0.18 6.92 -25.78 -0.18 0.00 16 9 C -0.10 0.24 4.19 -89.81 -0.38 -0.14 16 10 H 0.11 -0.30 8.14 -51.93 -0.42 -0.73 16 11 C 0.07 -0.10 4.34 37.16 0.16 0.06 16 12 O -0.31 -0.30 10.14 -19.44 -0.20 -0.49 16 13 C 0.14 0.16 6.69 -39.22 -0.26 -0.10 16 14 C -0.15 -0.16 9.99 -39.43 -0.39 -0.56 16 15 C -0.05 -0.04 9.68 -39.60 -0.38 -0.42 16 16 C -0.16 -0.05 5.35 -104.60 -0.56 -0.61 16 17 C -0.06 0.00 2.80 36.01 0.10 0.10 16 18 O -0.54 -0.20 12.83 -35.23 -0.45 -0.65 16 19 Si 0.68 -0.64 29.80 -169.99 -5.07 -5.70 16 20 C -0.07 0.03 8.66 -39.60 -0.34 -0.32 16 21 C -0.20 0.00 9.04 -39.43 -0.36 -0.35 16 22 C -0.14 0.43 6.52 -25.92 -0.17 0.27 16 23 H 0.06 -0.21 6.60 -51.93 -0.34 -0.55 16 24 H 0.05 -0.08 6.56 -51.93 -0.34 -0.42 16 25 H 0.10 -0.36 8.14 -51.93 -0.42 -0.78 16 26 H 0.12 -0.29 7.04 -51.93 -0.37 -0.65 16 27 H 0.10 -0.08 8.10 -51.93 -0.42 -0.50 16 28 H 0.08 -0.09 5.60 -51.93 -0.29 -0.38 16 29 H 0.07 -0.18 7.67 -51.93 -0.40 -0.58 16 30 H 0.13 0.02 8.06 -52.49 -0.42 -0.40 16 31 H 0.13 0.00 8.06 -52.49 -0.42 -0.42 16 32 H 0.11 0.05 7.96 -51.93 -0.41 -0.37 16 33 H 0.38 -1.32 8.70 45.56 0.40 -0.92 16 34 H -0.26 -0.38 7.11 56.52 0.40 0.02 16 35 H -0.25 -0.60 7.11 56.52 0.40 -0.20 16 36 H 0.13 -0.31 4.90 -52.49 -0.26 -0.56 16 37 H 0.13 -0.24 6.30 -52.49 -0.33 -0.57 16 38 H 0.09 -0.39 6.64 -51.93 -0.35 -0.73 16 39 H 0.11 -0.42 8.04 -51.93 -0.42 -0.84 16 LS Contribution 327.95 15.07 4.94 4.94 Total: 0.00 -6.02 327.95 -7.07 -13.09 By element: Atomic # 1 Polarization: -5.19 SS G_CDS: -4.41 Total: -9.60 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -1.70 Total: -0.77 kcal Atomic # 8 Polarization: -0.36 SS G_CDS: -0.94 Total: -1.30 kcal Atomic # 9 Polarization: -0.76 SS G_CDS: 0.11 Total: -0.65 kcal Atomic # 14 Polarization: -0.64 SS G_CDS: -5.07 Total: -5.70 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -6.02 -7.07 -13.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26799_17321600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.453 kcal (2) G-P(sol) polarization free energy of solvation -6.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds