Wall clock time and date at job start Tue Mar 9 2021 15:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00184 * 2 1 4 4 C 1.52996 * 112.85107 * 294.13165 * 3 2 1 5 5 F 1.39904 * 109.47163 * 195.75110 * 4 3 2 6 6 F 1.39895 * 109.46948 * 315.75300 * 4 3 2 7 7 F 1.39898 * 109.46890 * 75.75209 * 4 3 2 8 8 C 1.54052 * 113.61329 * 162.81803 * 3 2 1 9 9 C 1.53775 * 86.98636 * 270.88681 * 8 3 2 10 10 H 1.08998 * 113.61610 * 219.97593 * 9 8 3 11 11 C 1.53002 * 113.61441 * 89.16231 * 9 8 3 12 12 O 1.42898 * 109.47271 * 85.86148 * 11 9 8 13 13 C 1.35904 * 117.00211 * 180.02562 * 12 11 9 14 14 C 1.38730 * 120.05302 * 180.02562 * 13 12 11 15 15 C 1.38147 * 119.93915 * 180.02562 * 14 13 12 16 16 C 1.38268 * 120.05565 * 0.02562 * 15 14 13 17 17 C 1.50708 * 119.94357 * 179.97438 * 16 15 14 18 18 O 1.42904 * 109.46840 * 64.99570 * 17 16 15 19 19 Si 1.86297 * 109.47099 * 184.99661 * 17 16 15 20 20 C 1.38259 * 120.11418 * 0.24815 * 16 15 14 21 21 C 1.38152 * 120.05221 * 359.45342 * 20 16 15 22 22 C 1.53773 * 87.17486 * 334.57117 * 9 8 3 23 23 H 1.08998 * 109.47143 * 303.05963 * 1 2 3 24 24 H 1.09002 * 109.47213 * 63.05598 * 1 2 3 25 25 H 1.09001 * 109.47345 * 183.06332 * 1 2 3 26 26 H 1.09000 * 113.61304 * 156.38149 * 8 3 2 27 27 H 1.09003 * 113.69316 * 25.40493 * 8 3 2 28 28 H 1.08997 * 109.47588 * 325.86035 * 11 9 8 29 29 H 1.09004 * 109.47075 * 205.85963 * 11 9 8 30 30 H 1.07995 * 120.03559 * 0.04120 * 14 13 12 31 31 H 1.07998 * 119.97322 * 179.97438 * 15 14 13 32 32 H 1.08994 * 109.46859 * 305.00336 * 17 16 15 33 33 H 0.96706 * 114.00009 * 60.00086 * 18 17 16 34 34 H 1.48504 * 109.99776 * 58.68125 * 19 17 16 35 35 H 1.48497 * 109.99809 * 179.97438 * 19 17 16 36 36 H 1.07995 * 119.97325 * 179.70815 * 20 16 15 37 37 H 1.07999 * 120.02586 * 180.25104 * 21 20 16 38 38 H 1.09004 * 113.61865 * 140.02670 * 22 9 8 39 39 H 1.09003 * 113.61281 * 270.92924 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7253 2.0827 -1.2867 5 9 2.5970 3.1734 -1.3754 6 9 1.9146 1.2435 -2.3899 7 9 0.4039 2.5418 -1.2712 8 6 3.4932 1.3206 0.4170 9 6 3.0004 1.4807 1.8648 10 1 3.5975 2.1760 2.4549 11 6 2.7581 0.1502 2.5804 12 8 3.9820 -0.3109 3.1560 13 6 3.9405 -1.4890 3.8324 14 6 5.0922 -1.9955 4.4169 15 6 5.0474 -3.1935 5.1034 16 6 3.8562 -3.8878 5.2077 17 6 3.8104 -5.1947 5.9567 18 8 4.0926 -4.9621 7.3381 19 14 2.1150 -5.9483 5.7875 20 6 2.7083 -3.3879 4.6212 21 6 2.7465 -2.1872 3.9388 22 6 1.7235 2.1074 1.2805 23 1 -0.3633 0.5606 0.8613 24 1 -0.3634 0.4657 -0.9161 25 1 -0.3634 -1.0262 0.0549 26 1 4.0426 2.1852 0.0446 27 1 4.0095 0.3784 0.2331 28 1 2.3931 -0.5862 1.8646 29 1 2.0168 0.2906 3.3672 30 1 6.0229 -1.4537 4.3356 31 1 5.9437 -3.5885 5.5583 32 1 4.5539 -5.8763 5.5438 33 1 3.4694 -4.3629 7.7714 34 1 1.7967 -6.1656 4.3533 35 1 2.0570 -7.2380 6.5212 36 1 1.7802 -3.9344 4.7000 37 1 1.8487 -1.7951 3.4843 38 1 0.8121 1.8000 1.7933 39 1 1.7900 3.1867 1.1437 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26799_17321600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:51:13 Heat of formation + Delta-G solvation = -196.162091 kcal Electronic energy + Delta-G solvation = -27567.145967 eV Core-core repulsion = 23028.592861 eV Total energy + Delta-G solvation = -4538.553106 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.26199 -48.79515 -48.73747 -41.71607 -40.87957 -39.04591 -37.32619 -36.83698 -32.34384 -31.71882 -30.40670 -28.19773 -27.49527 -26.76855 -26.05969 -24.15400 -23.09706 -22.22459 -20.58249 -19.86254 -19.55907 -19.24483 -19.14111 -18.19281 -17.28461 -17.05700 -16.77897 -16.46775 -16.46098 -16.01475 -15.71183 -15.65822 -15.58452 -15.55433 -15.19646 -15.11250 -14.91739 -14.86748 -14.61187 -14.35856 -14.32892 -13.94434 -13.68642 -13.56747 -13.22954 -13.06514 -12.67031 -12.36094 -12.27618 -12.09714 -11.92795 -11.75969 -11.71279 -11.53584 -10.79809 -10.39553 -10.01545 -9.16475 -5.00484 0.31862 0.33547 1.33682 1.53119 1.64185 1.97493 2.05413 2.11413 2.56616 2.62926 2.69127 2.89603 3.31350 3.40073 3.49979 3.57799 3.68049 3.79970 3.87144 3.98911 4.25600 4.26565 4.29212 4.32591 4.38785 4.43388 4.50316 4.52163 4.55557 4.65808 4.71320 4.74102 4.81782 4.84530 4.99963 5.05091 5.21389 5.31190 5.52333 5.72152 5.75894 6.41985 6.80255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.346 6.346 3 C 0.036 3.964 4 C 0.432 3.568 5 F -0.177 7.177 6 F -0.189 7.189 7 F -0.184 7.184 8 C -0.115 4.115 9 C -0.093 4.093 10 H 0.113 0.887 11 C 0.066 3.934 12 O -0.325 6.325 13 C 0.126 3.874 14 C -0.165 4.165 15 C -0.062 4.062 16 C -0.165 4.165 17 C -0.070 4.070 18 O -0.557 6.557 19 Si 0.776 3.224 20 C -0.077 4.077 21 C -0.205 4.205 22 C -0.132 4.132 23 H 0.074 0.926 24 H 0.042 0.958 25 H 0.113 0.887 26 H 0.122 0.878 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.395 0.605 34 H -0.287 1.287 35 H -0.301 1.301 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.110 0.890 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 2.781 2.882 5.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.264 6.264 3 C -0.006 4.006 4 C 0.377 3.623 5 F -0.158 7.158 6 F -0.171 7.171 7 F -0.165 7.165 8 C -0.153 4.153 9 C -0.112 4.112 10 H 0.131 0.869 11 C -0.009 4.009 12 O -0.239 6.239 13 C 0.080 3.920 14 C -0.184 4.184 15 C -0.081 4.081 16 C -0.165 4.165 17 C -0.180 4.180 18 O -0.365 6.365 19 Si 0.682 3.318 20 C -0.094 4.094 21 C -0.224 4.224 22 C -0.169 4.169 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.132 0.868 26 H 0.141 0.859 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.120 0.880 33 H 0.245 0.755 34 H -0.214 1.214 35 H -0.230 1.230 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.128 0.872 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.990 1.690 2.396 4.952 hybrid contribution 0.313 0.201 -0.962 1.032 sum -3.678 1.892 1.433 4.377 Atomic orbital electron populations 1.23307 0.78648 1.05392 1.01871 1.88076 1.22146 1.22327 1.93831 1.24242 1.00454 0.86335 0.89610 1.21561 0.74151 0.78725 0.87859 1.93172 1.69556 1.56473 1.96643 1.93185 1.94859 1.71430 1.57613 1.93181 1.36692 1.89804 1.96850 1.23372 0.90609 1.05470 0.95801 1.22032 0.97887 0.96294 0.94939 0.86881 1.22897 0.84895 0.95654 0.97435 1.86015 1.36230 1.35097 1.66547 1.19179 0.94562 0.85780 0.92458 1.20642 0.97677 0.97923 1.02142 1.20940 0.98152 0.93196 0.95762 1.20312 0.94367 0.98751 1.03092 1.25110 1.12496 0.97033 0.83338 1.86465 1.58381 1.70756 1.20936 0.93833 0.78712 0.80378 0.78836 1.21011 0.97695 0.95077 0.95622 1.21438 0.97879 0.97611 1.05453 1.23618 0.99867 1.01405 0.92014 0.90756 0.93904 0.86834 0.85944 0.89453 0.90147 0.89823 0.84771 0.84881 0.87985 0.75539 1.21381 1.22961 0.83392 0.83203 0.87160 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 10.33 113.37 1.17 1.16 16 2 O -0.35 0.34 8.34 -148.98 -1.24 -0.90 16 3 C 0.04 -0.08 0.85 -10.18 -0.01 -0.09 16 4 C 0.43 0.74 2.52 71.98 0.18 0.92 16 5 F -0.18 -0.34 15.82 44.97 0.71 0.37 16 6 F -0.19 -1.17 17.11 44.97 0.77 -0.40 16 7 F -0.18 -0.35 15.34 44.97 0.69 0.34 16 8 C -0.12 0.35 6.92 31.21 0.22 0.57 16 9 C -0.09 0.52 4.19 -10.27 -0.04 0.48 16 10 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 11 C 0.07 -0.25 4.34 71.98 0.31 0.07 16 12 O -0.32 -0.62 10.14 -92.47 -0.94 -1.55 16 13 C 0.13 0.31 6.69 22.50 0.15 0.46 16 14 C -0.17 -0.49 9.99 22.37 0.22 -0.27 16 15 C -0.06 -0.14 9.68 22.26 0.22 0.07 16 16 C -0.16 -0.10 5.35 -19.85 -0.11 -0.21 16 17 C -0.07 0.00 2.80 71.24 0.20 0.20 16 18 O -0.56 -0.36 12.83 -148.98 -1.91 -2.27 16 19 Si 0.78 -1.70 29.80 68.60 2.04 0.34 16 20 C -0.08 0.12 8.66 22.25 0.19 0.31 16 21 C -0.21 0.17 9.04 22.37 0.20 0.37 16 22 C -0.13 0.97 6.52 31.12 0.20 1.17 16 23 H 0.07 -0.67 6.60 -2.39 -0.02 -0.69 16 24 H 0.04 -0.11 6.56 -2.39 -0.02 -0.13 16 25 H 0.11 -0.88 8.14 -2.39 -0.02 -0.90 16 26 H 0.12 -0.57 7.04 -2.39 -0.02 -0.59 16 27 H 0.09 -0.05 8.10 -2.39 -0.02 -0.07 16 28 H 0.08 -0.23 5.60 -2.39 -0.01 -0.24 16 29 H 0.08 -0.59 7.67 -2.38 -0.02 -0.61 16 30 H 0.13 0.21 8.06 -2.91 -0.02 0.19 16 31 H 0.13 0.15 8.06 -2.91 -0.02 0.13 16 32 H 0.10 0.15 7.96 -2.39 -0.02 0.13 16 33 H 0.39 -2.98 8.70 -74.05 -0.64 -3.62 16 34 H -0.29 -0.74 7.11 99.48 0.71 -0.03 16 35 H -0.30 -1.67 7.11 99.48 0.71 -0.97 16 36 H 0.15 -0.95 4.90 -2.91 -0.01 -0.97 16 37 H 0.15 -0.80 6.30 -2.91 -0.02 -0.82 16 38 H 0.11 -1.13 6.64 -2.38 -0.02 -1.15 16 39 H 0.12 -1.10 8.04 -2.39 -0.02 -1.12 16 Total: 0.00 -14.81 327.95 3.73 -11.08 By element: Atomic # 1 Polarization: -12.72 SS G_CDS: 0.50 Total: -12.22 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 3.11 Total: 5.22 kcal Atomic # 8 Polarization: -0.63 SS G_CDS: -4.09 Total: -4.72 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 2.17 Total: 0.31 kcal Atomic # 14 Polarization: -1.70 SS G_CDS: 2.04 Total: 0.34 kcal Total: -14.81 3.73 -11.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26799_17321600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.084 kcal (2) G-P(sol) polarization free energy of solvation -14.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds