Wall clock time and date at job start Tue Mar 9 2021 15:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00200 * 180.23540 * 8 7 6 10 10 O 1.42902 * 109.47435 * 270.28472 * 9 8 7 11 11 C 1.35898 * 116.99921 * 179.97438 * 10 9 8 12 12 C 1.38726 * 120.05805 * 359.72967 * 11 10 9 13 13 C 1.38149 * 119.94472 * 179.74508 * 12 11 10 14 14 C 1.38267 * 120.05269 * 0.50313 * 13 12 11 15 15 C 1.50701 * 119.94557 * 179.74807 * 14 13 12 16 16 O 1.42897 * 109.47439 * 245.02171 * 15 14 13 17 17 Si 1.86301 * 109.46848 * 5.02197 * 15 14 13 18 18 H 1.48504 * 109.47001 * 180.02562 * 17 15 14 19 19 H 1.48504 * 109.47074 * 299.99960 * 17 15 14 20 20 H 1.48496 * 109.47384 * 60.00121 * 17 15 14 21 21 C 1.38269 * 120.11412 * 359.77021 * 14 13 12 22 22 C 1.38144 * 120.05420 * 359.97438 * 21 14 13 23 23 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 24 24 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 25 25 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 26 26 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 27 27 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 30 30 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 31 31 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 32 32 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 33 33 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 34 34 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 35 35 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 36 36 H 1.09007 * 109.46985 * 30.28368 * 9 8 7 37 37 H 1.08998 * 109.47169 * 150.27754 * 9 8 7 38 38 H 1.08000 * 120.02841 * 359.97438 * 12 11 10 39 39 H 1.07992 * 119.97506 * 180.22746 * 13 12 11 40 40 H 1.09000 * 109.46999 * 125.01880 * 15 14 13 41 41 H 0.96694 * 114.00238 * 179.97438 * 16 15 14 42 42 H 1.07994 * 119.97209 * 179.97438 * 21 14 13 43 43 H 1.07993 * 120.02991 * 179.97438 * 22 21 14 44 44 H 1.08001 * 120.00310 * 179.72161 * 23 8 7 45 45 H 1.07997 * 120.00460 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4062 -2.1840 3.7829 9 6 3.9075 -2.8945 5.0138 10 8 2.7955 -3.3437 5.7907 11 6 3.0758 -4.0090 6.9420 12 6 4.3940 -4.2300 7.3135 13 6 4.6763 -4.9020 8.4871 14 6 3.6463 -5.3633 9.2858 15 6 3.9570 -6.1010 10.5626 16 8 3.4983 -7.4503 10.4570 17 14 5.7972 -6.0917 10.8531 18 1 6.1035 -6.8192 12.1110 19 1 6.4811 -6.7594 9.7165 20 1 6.2739 -4.6896 10.9630 21 6 2.3316 -5.1493 8.9149 22 6 2.0440 -4.4732 7.7451 23 6 3.1758 -0.8214 3.8172 24 6 2.7155 -0.1696 2.6883 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.5740 1.7565 0.0005 29 1 2.1207 2.2703 -0.8900 30 1 2.1206 2.2703 0.8900 31 1 2.1207 -1.9059 -1.5211 32 1 2.1208 -0.3644 -2.4111 33 1 3.5741 -0.8786 -1.5208 34 1 2.5357 -2.7986 0.5826 35 1 3.3471 -3.9610 2.5960 36 1 4.5134 -3.7509 4.7175 37 1 4.5127 -2.2094 5.6076 38 1 5.1989 -3.8738 6.6877 39 1 5.7023 -5.0711 8.7786 40 1 3.4550 -5.6109 11.3968 41 1 3.6659 -7.9855 11.2446 42 1 1.5288 -5.5109 9.5404 43 1 1.0170 -4.3066 7.4555 44 1 3.3551 -0.2660 4.7259 45 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26799_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:51:57 Heat of formation + Delta-G solvation = -66.065586 kcal Electronic energy + Delta-G solvation = -22691.993453 eV Core-core repulsion = 19376.778349 eV Total energy + Delta-G solvation = -3315.215103 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.27101 -40.04828 -38.82665 -37.19294 -33.27993 -32.01207 -31.88724 -31.54115 -29.58938 -28.45920 -28.41702 -27.53967 -26.00829 -23.89147 -23.48548 -22.31230 -21.74199 -19.28005 -18.48262 -17.92173 -17.00126 -16.94256 -16.74629 -16.07896 -15.68969 -15.60446 -15.50733 -14.71740 -14.47264 -14.39882 -14.36873 -14.23329 -14.10579 -13.96230 -13.86633 -13.59298 -13.48973 -13.37814 -13.27291 -13.22205 -13.11177 -12.62750 -12.42501 -12.18385 -12.11491 -11.88806 -11.71552 -11.64109 -11.04403 -10.91929 -10.84232 -10.31880 -9.94834 -9.78329 -9.69248 -9.09391 0.16967 0.37603 0.40091 0.54415 1.14807 1.42484 1.48662 1.69289 1.83834 1.88727 1.89470 2.31046 2.53397 2.71105 3.03976 3.45376 3.69461 3.79721 3.83032 3.88897 4.00454 4.09278 4.22306 4.23587 4.33216 4.42735 4.50325 4.57021 4.66251 4.69214 4.70341 4.73941 4.75529 4.75645 4.75902 4.76403 4.99953 5.02418 5.15021 5.25774 5.33945 5.40384 5.45606 5.48743 5.53740 5.59091 5.61499 5.62223 5.78917 6.10824 6.44134 6.59741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.449 4.449 4 C -0.450 4.450 5 C -0.361 4.361 6 C -0.092 4.092 7 C -0.106 4.106 8 C -0.089 4.089 9 C 0.100 3.900 10 O -0.307 6.307 11 C 0.136 3.864 12 C -0.205 4.205 13 C -0.082 4.082 14 C -0.115 4.115 15 C -0.076 4.076 16 O -0.545 6.545 17 Si 0.944 3.056 18 H -0.257 1.257 19 H -0.249 1.249 20 H -0.250 1.250 21 C -0.048 4.048 22 C -0.151 4.151 23 C -0.106 4.106 24 C -0.092 4.092 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.075 0.925 41 H 0.379 0.621 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.918 1.297 0.014 1.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.403 4.403 6 C -0.110 4.110 7 C -0.124 4.124 8 C -0.089 4.089 9 C 0.025 3.975 10 O -0.221 6.221 11 C 0.090 3.910 12 C -0.223 4.223 13 C -0.099 4.099 14 C -0.115 4.115 15 C -0.187 4.187 16 O -0.351 6.351 17 Si 0.767 3.233 18 H -0.181 1.181 19 H -0.172 1.172 20 H -0.174 1.174 21 C -0.067 4.067 22 C -0.169 4.169 23 C -0.124 4.124 24 C -0.110 4.110 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.093 0.907 41 H 0.226 0.774 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.474 1.535 -0.473 2.180 hybrid contribution 0.047 -0.320 0.672 0.746 sum 1.522 1.215 0.200 1.957 Atomic orbital electron populations 1.26124 1.20443 1.04624 1.04507 0.78181 0.66902 0.66100 0.63655 1.26135 1.06445 1.18554 1.04590 1.26136 1.06448 1.08076 1.15075 1.27483 1.02955 0.99543 1.10279 1.21082 0.97475 0.94671 0.97743 1.21155 0.98709 0.99637 0.92920 1.19457 1.01841 0.93917 0.93663 1.21649 0.87777 0.98164 0.89915 1.86177 1.34553 1.69447 1.31876 1.19053 0.93321 0.92396 0.86190 1.21148 0.95493 1.06061 0.99637 1.20770 0.98457 0.96966 0.93751 1.19144 0.93804 1.01761 0.96837 1.24648 1.11235 0.84919 0.97850 1.86517 1.84254 1.20856 1.43477 0.85786 0.75248 0.81590 0.80656 1.18106 1.17230 1.17382 1.20812 0.96064 0.94798 0.94983 1.20507 0.98651 1.02534 0.95227 1.21150 0.98742 0.93868 0.98678 1.21079 0.97475 0.99775 0.92653 0.91146 0.91022 0.91144 0.91061 0.90925 0.91160 0.91156 0.90925 0.91059 0.85877 0.86109 0.90977 0.90974 0.85095 0.86020 0.90701 0.77366 0.84851 0.84809 0.86120 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.55 8.65 101.05 0.87 1.43 16 2 Si 1.06 -2.54 12.32 -169.99 -2.09 -4.63 16 3 C -0.45 0.80 8.53 101.05 0.86 1.66 16 4 C -0.45 0.79 8.53 101.05 0.86 1.65 16 5 C -0.36 -0.02 4.59 -39.58 -0.18 -0.20 16 6 C -0.09 -0.06 9.29 -39.58 -0.37 -0.43 16 7 C -0.11 -0.15 9.70 -39.58 -0.38 -0.54 16 8 C -0.09 -0.15 5.51 -104.63 -0.58 -0.73 16 9 C 0.10 0.10 4.86 36.00 0.18 0.27 16 10 O -0.31 -0.99 10.12 -19.42 -0.20 -1.19 16 11 C 0.14 0.40 6.69 -39.22 -0.26 0.14 16 12 C -0.20 -0.40 9.04 -39.43 -0.36 -0.75 16 13 C -0.08 -0.16 8.66 -39.60 -0.34 -0.51 16 14 C -0.12 -0.25 5.39 -104.60 -0.56 -0.81 16 15 C -0.08 -0.01 2.79 36.01 0.10 0.09 16 16 O -0.55 -0.36 12.81 -35.23 -0.45 -0.81 16 17 Si 0.94 -0.19 25.13 -169.99 -4.27 -4.47 16 18 H -0.26 0.04 7.11 56.52 0.40 0.44 16 19 H -0.25 -0.29 7.04 56.52 0.40 0.11 16 20 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 21 C -0.05 -0.10 9.68 -39.60 -0.38 -0.48 16 22 C -0.15 -0.38 9.99 -39.43 -0.39 -0.78 16 23 C -0.11 -0.14 9.70 -39.58 -0.38 -0.53 16 24 C -0.09 -0.05 9.29 -39.58 -0.37 -0.42 16 25 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 26 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 27 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 31 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 32 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 33 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 34 H 0.12 -0.16 7.43 -52.49 -0.39 -0.55 16 35 H 0.12 0.02 8.06 -52.48 -0.42 -0.40 16 36 H 0.07 -0.02 7.59 -51.93 -0.39 -0.41 16 37 H 0.07 -0.03 7.62 -51.93 -0.40 -0.42 16 38 H 0.13 -0.02 6.30 -52.49 -0.33 -0.35 16 39 H 0.12 0.07 4.86 -52.49 -0.25 -0.18 16 40 H 0.08 -0.12 7.96 -51.93 -0.41 -0.54 16 41 H 0.38 -1.44 8.74 45.56 0.40 -1.04 16 42 H 0.13 0.07 8.06 -52.49 -0.42 -0.35 16 43 H 0.13 0.19 8.06 -52.49 -0.42 -0.23 16 44 H 0.12 0.00 8.06 -52.49 -0.42 -0.42 16 45 H 0.12 -0.17 7.43 -52.49 -0.39 -0.56 16 LS Contribution 373.81 15.07 5.63 5.63 Total: 0.00 -6.24 373.81 -9.43 -15.67 By element: Atomic # 1 Polarization: -2.92 SS G_CDS: -6.35 Total: -9.28 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.69 Total: -0.93 kcal Atomic # 8 Polarization: -1.35 SS G_CDS: -0.65 Total: -2.00 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: -6.37 Total: -9.10 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -6.24 -9.43 -15.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26799_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.397 kcal (2) G-P(sol) polarization free energy of solvation -6.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds