Wall clock time and date at job start Tue Mar 9 2021 15:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00200 * 180.23540 * 8 7 6 10 10 O 1.42902 * 109.47435 * 270.28472 * 9 8 7 11 11 C 1.35898 * 116.99921 * 179.97438 * 10 9 8 12 12 C 1.38726 * 120.05805 * 359.72967 * 11 10 9 13 13 C 1.38149 * 119.94472 * 179.74508 * 12 11 10 14 14 C 1.38267 * 120.05269 * 0.50313 * 13 12 11 15 15 C 1.50701 * 119.94557 * 179.74807 * 14 13 12 16 16 O 1.42897 * 109.47439 * 245.02171 * 15 14 13 17 17 Si 1.86301 * 109.46848 * 5.02197 * 15 14 13 18 18 H 1.48504 * 109.47001 * 180.02562 * 17 15 14 19 19 H 1.48504 * 109.47074 * 299.99960 * 17 15 14 20 20 H 1.48496 * 109.47384 * 60.00121 * 17 15 14 21 21 C 1.38269 * 120.11412 * 359.77021 * 14 13 12 22 22 C 1.38144 * 120.05420 * 359.97438 * 21 14 13 23 23 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 24 24 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 25 25 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 26 26 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 27 27 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 30 30 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 31 31 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 32 32 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 33 33 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 34 34 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 35 35 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 36 36 H 1.09007 * 109.46985 * 30.28368 * 9 8 7 37 37 H 1.08998 * 109.47169 * 150.27754 * 9 8 7 38 38 H 1.08000 * 120.02841 * 359.97438 * 12 11 10 39 39 H 1.07992 * 119.97506 * 180.22746 * 13 12 11 40 40 H 1.09000 * 109.46999 * 125.01880 * 15 14 13 41 41 H 0.96694 * 114.00238 * 179.97438 * 16 15 14 42 42 H 1.07994 * 119.97209 * 179.97438 * 21 14 13 43 43 H 1.07993 * 120.02991 * 179.97438 * 22 21 14 44 44 H 1.08001 * 120.00310 * 179.72161 * 23 8 7 45 45 H 1.07997 * 120.00460 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4062 -2.1840 3.7829 9 6 3.9075 -2.8945 5.0138 10 8 2.7955 -3.3437 5.7907 11 6 3.0758 -4.0090 6.9420 12 6 4.3940 -4.2300 7.3135 13 6 4.6763 -4.9020 8.4871 14 6 3.6463 -5.3633 9.2858 15 6 3.9570 -6.1010 10.5626 16 8 3.4983 -7.4503 10.4570 17 14 5.7972 -6.0917 10.8531 18 1 6.1035 -6.8192 12.1110 19 1 6.4811 -6.7594 9.7165 20 1 6.2739 -4.6896 10.9630 21 6 2.3316 -5.1493 8.9149 22 6 2.0440 -4.4732 7.7451 23 6 3.1758 -0.8214 3.8172 24 6 2.7155 -0.1696 2.6883 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.5740 1.7565 0.0005 29 1 2.1207 2.2703 -0.8900 30 1 2.1206 2.2703 0.8900 31 1 2.1207 -1.9059 -1.5211 32 1 2.1208 -0.3644 -2.4111 33 1 3.5741 -0.8786 -1.5208 34 1 2.5357 -2.7986 0.5826 35 1 3.3471 -3.9610 2.5960 36 1 4.5134 -3.7509 4.7175 37 1 4.5127 -2.2094 5.6076 38 1 5.1989 -3.8738 6.6877 39 1 5.7023 -5.0711 8.7786 40 1 3.4550 -5.6109 11.3968 41 1 3.6659 -7.9855 11.2446 42 1 1.5288 -5.5109 9.5404 43 1 1.0170 -4.3066 7.4555 44 1 3.3551 -0.2660 4.7259 45 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26799_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:51:56 Heat of formation + Delta-G solvation = -56.947058 kcal Electronic energy + Delta-G solvation = -22691.598043 eV Core-core repulsion = 19376.778349 eV Total energy + Delta-G solvation = -3314.819694 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38101 -40.07754 -38.89737 -37.21794 -33.32153 -32.11812 -31.89869 -31.62385 -29.44601 -28.29522 -28.27879 -27.58056 -26.05634 -23.99475 -23.50239 -22.38845 -21.79696 -19.39776 -18.46612 -17.96379 -17.08175 -16.98321 -16.80786 -16.09637 -15.73781 -15.66604 -15.57285 -14.73950 -14.52082 -14.45906 -14.35251 -14.11950 -14.00165 -13.90797 -13.76041 -13.60768 -13.48073 -13.42945 -13.11614 -13.11308 -12.97125 -12.63069 -12.47788 -12.22462 -12.13903 -11.90461 -11.76269 -11.68974 -10.92727 -10.79202 -10.76050 -10.29460 -10.07857 -9.82501 -9.70693 -9.22786 0.14169 0.23640 0.27428 0.50280 1.16821 1.44736 1.49558 1.82877 1.89647 1.98498 2.02767 2.29380 2.59809 2.66101 3.00521 3.48075 3.64276 3.75156 3.78909 3.84659 3.98890 4.08240 4.19864 4.21899 4.27515 4.42396 4.48622 4.51753 4.68229 4.69766 4.83767 4.84103 4.88365 4.89305 4.89665 4.90404 4.92399 4.98423 5.14323 5.14475 5.21897 5.38820 5.46891 5.55267 5.58262 5.58710 5.67190 5.68766 5.70585 6.10563 6.32306 6.83609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.128 2.872 3 C -0.461 4.461 4 C -0.462 4.462 5 C -0.374 4.374 6 C -0.104 4.104 7 C -0.123 4.123 8 C -0.104 4.104 9 C 0.098 3.902 10 O -0.323 6.323 11 C 0.121 3.879 12 C -0.208 4.208 13 C -0.094 4.094 14 C -0.127 4.127 15 C -0.077 4.077 16 O -0.564 6.564 17 Si 0.976 3.024 18 H -0.254 1.254 19 H -0.272 1.272 20 H -0.259 1.259 21 C -0.055 4.055 22 C -0.163 4.163 23 C -0.122 4.122 24 C -0.103 4.103 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.147 0.853 39 H 0.132 0.868 40 H 0.095 0.905 41 H 0.397 0.603 42 H 0.146 0.854 43 H 0.138 0.862 44 H 0.128 0.872 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 1.529 0.042 1.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.315 2.685 3 C -0.568 4.568 4 C -0.569 4.569 5 C -0.413 4.413 6 C -0.121 4.121 7 C -0.141 4.141 8 C -0.104 4.104 9 C 0.024 3.976 10 O -0.238 6.238 11 C 0.076 3.924 12 C -0.227 4.227 13 C -0.111 4.111 14 C -0.128 4.128 15 C -0.187 4.187 16 O -0.373 6.373 17 Si 0.801 3.199 18 H -0.178 1.178 19 H -0.197 1.197 20 H -0.183 1.183 21 C -0.073 4.073 22 C -0.182 4.182 23 C -0.140 4.140 24 C -0.121 4.121 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.158 0.842 35 H 0.144 0.856 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.165 0.835 39 H 0.150 0.850 40 H 0.113 0.887 41 H 0.248 0.752 42 H 0.164 0.836 43 H 0.156 0.844 44 H 0.146 0.854 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.571 1.751 -0.411 2.389 hybrid contribution 0.010 -0.406 0.655 0.770 sum 1.581 1.345 0.243 2.090 Atomic orbital electron populations 1.26311 1.21840 1.04379 1.04554 0.77161 0.65032 0.64740 0.61574 1.26260 1.06466 1.19200 1.04896 1.26268 1.06465 1.08438 1.15705 1.28091 1.02248 0.99599 1.11316 1.21399 0.97305 0.95257 0.98177 1.21384 0.99213 1.00157 0.93365 1.19629 1.02456 0.94309 0.94039 1.21762 0.87448 0.98686 0.89723 1.86145 1.35764 1.69686 1.32176 1.19222 0.93891 0.92939 0.86380 1.21363 0.95652 1.05791 0.99873 1.21009 0.99119 0.97099 0.93909 1.19486 0.93858 1.01759 0.97660 1.24698 1.11687 0.84866 0.97450 1.86466 1.84439 1.21242 1.45141 0.85336 0.74443 0.80552 0.79611 1.17812 1.19663 1.18286 1.21007 0.96608 0.94708 0.94997 1.20699 0.98970 1.02853 0.95631 1.21388 0.99134 0.94036 0.99454 1.21405 0.97249 1.00824 0.92629 0.91509 0.90582 0.91552 0.91181 0.90589 0.90935 0.90989 0.90589 0.91192 0.84245 0.85589 0.90134 0.89903 0.83516 0.85025 0.88683 0.75237 0.83623 0.84434 0.85417 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.26 8.65 113.37 0.98 2.24 16 2 Si 1.13 -5.96 12.32 68.60 0.85 -5.12 16 3 C -0.46 1.96 8.53 113.37 0.97 2.93 16 4 C -0.46 1.89 8.53 113.37 0.97 2.86 16 5 C -0.37 -0.07 4.59 22.27 0.10 0.03 16 6 C -0.10 -0.17 9.29 22.27 0.21 0.03 16 7 C -0.12 -0.48 9.70 22.27 0.22 -0.26 16 8 C -0.10 -0.47 5.51 -19.87 -0.11 -0.58 16 9 C 0.10 0.29 4.86 71.24 0.35 0.63 16 10 O -0.32 -2.52 10.12 -92.40 -0.94 -3.45 16 11 C 0.12 0.85 6.69 22.51 0.15 1.00 16 12 C -0.21 -0.95 9.04 22.37 0.20 -0.75 16 13 C -0.09 -0.42 8.66 22.26 0.19 -0.23 16 14 C -0.13 -0.57 5.39 -19.85 -0.11 -0.68 16 15 C -0.08 0.01 2.79 71.24 0.20 0.21 16 16 O -0.56 -0.46 12.81 -148.98 -1.91 -2.37 16 17 Si 0.98 -0.65 25.13 68.60 1.72 1.07 16 18 H -0.25 0.32 7.11 99.48 0.71 1.03 16 19 H -0.27 -0.80 7.04 99.48 0.70 -0.10 16 20 H -0.26 -0.14 7.11 99.48 0.71 0.56 16 21 C -0.06 -0.26 9.68 22.25 0.22 -0.04 16 22 C -0.16 -1.01 9.99 22.37 0.22 -0.79 16 23 C -0.12 -0.43 9.70 22.27 0.22 -0.22 16 24 C -0.10 -0.15 9.29 22.27 0.21 0.06 16 25 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 26 H 0.08 -0.27 7.96 -2.38 -0.02 -0.29 16 27 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 28 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 29 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 30 H 0.07 -0.33 7.69 -2.38 -0.02 -0.35 16 31 H 0.07 -0.31 7.69 -2.38 -0.02 -0.33 16 32 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 33 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.14 -0.37 7.43 -2.91 -0.02 -0.39 16 35 H 0.13 0.20 8.06 -2.91 -0.02 0.18 16 36 H 0.08 0.04 7.59 -2.38 -0.02 0.02 16 37 H 0.08 0.00 7.62 -2.39 -0.02 -0.01 16 38 H 0.15 0.03 6.30 -2.91 -0.02 0.01 16 39 H 0.13 0.21 4.86 -2.91 -0.01 0.20 16 40 H 0.10 -0.42 7.96 -2.39 -0.02 -0.44 16 41 H 0.40 -3.33 8.74 -74.06 -0.65 -3.98 16 42 H 0.15 0.17 8.06 -2.91 -0.02 0.15 16 43 H 0.14 0.59 8.06 -2.91 -0.02 0.57 16 44 H 0.13 0.12 8.06 -2.91 -0.02 0.10 16 45 H 0.14 -0.42 7.43 -2.91 -0.02 -0.44 16 Total: 0.00 -14.46 373.81 5.97 -8.48 By element: Atomic # 1 Polarization: -6.14 SS G_CDS: 1.07 Total: -5.07 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.18 Total: 6.45 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: -2.84 Total: -5.82 kcal Atomic # 14 Polarization: -6.62 SS G_CDS: 2.57 Total: -4.05 kcal Total: -14.46 5.97 -8.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26799_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.462 kcal (2) G-P(sol) polarization free energy of solvation -14.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds