Wall clock time and date at job start Tue Mar 9 2021 15:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47260 * 2 1 4 4 C 1.52995 * 109.47352 * 239.99739 * 2 1 3 5 5 Si 1.86301 * 109.46997 * 119.99756 * 2 1 3 6 6 C 1.86300 * 109.47196 * 299.99888 * 5 2 1 7 7 C 1.86305 * 109.47158 * 180.02562 * 5 2 1 8 8 O 1.63100 * 109.47306 * 59.99857 * 5 2 1 9 9 C 1.42902 * 114.00187 * 180.02562 * 8 5 2 10 10 C 1.52991 * 109.46868 * 180.02562 * 9 8 5 11 11 O 1.42903 * 109.47422 * 65.00292 * 10 9 8 12 12 C 1.35897 * 117.00214 * 179.97438 * 11 10 9 13 13 C 1.38709 * 120.05637 * 359.95484 * 12 11 10 14 14 C 1.38172 * 119.94642 * 179.97438 * 13 12 11 15 15 C 1.38245 * 120.05216 * 0.02562 * 14 13 12 16 16 C 1.38287 * 120.11339 * 0.02562 * 15 14 13 17 17 C 1.38125 * 120.05453 * 359.95334 * 16 15 14 18 18 C 1.50699 * 120.02390 * 180.02562 * 17 16 15 19 19 O 1.42895 * 109.47124 * 105.00291 * 18 17 16 20 20 Si 1.86302 * 109.47415 * 344.99961 * 18 17 16 21 21 H 1.48499 * 109.47007 * 59.99977 * 20 18 17 22 22 H 1.48500 * 109.46966 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46711 * 300.00285 * 20 18 17 24 24 H 1.09005 * 109.47288 * 300.00619 * 1 2 3 25 25 H 1.08999 * 109.47179 * 60.00434 * 1 2 3 26 26 H 1.08996 * 109.47328 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46932 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46670 * 299.99878 * 3 2 1 29 29 H 1.08996 * 109.46937 * 59.99469 * 3 2 1 30 30 H 1.09009 * 109.47219 * 300.00294 * 4 2 1 31 31 H 1.08999 * 109.47119 * 59.99791 * 4 2 1 32 32 H 1.09000 * 109.47744 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.47259 * 180.02562 * 6 5 2 34 34 H 1.08996 * 109.47073 * 299.99967 * 6 5 2 35 35 H 1.08997 * 109.46959 * 60.00018 * 6 5 2 36 36 H 1.08996 * 109.46750 * 300.00024 * 7 5 2 37 37 H 1.08997 * 109.46835 * 59.99618 * 7 5 2 38 38 H 1.09003 * 109.46953 * 180.02562 * 7 5 2 39 39 H 1.08995 * 109.46671 * 59.99978 * 9 8 5 40 40 H 1.09000 * 109.46758 * 299.99792 * 9 8 5 41 41 H 1.08997 * 109.47699 * 305.00031 * 10 9 8 42 42 H 1.09008 * 109.46959 * 184.99831 * 10 9 8 43 43 H 1.08002 * 120.02844 * 0.04164 * 13 12 11 44 44 H 1.08002 * 119.97211 * 180.29545 * 14 13 12 45 45 H 1.07997 * 119.93859 * 179.97438 * 15 14 13 46 46 H 1.07998 * 119.97069 * 179.97438 * 16 15 14 47 47 H 1.09005 * 109.46839 * 225.00112 * 18 17 16 48 48 H 0.96704 * 114.00130 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8775 1.5216 8 8 1.6073 -2.4159 1.5213 9 6 2.0284 -3.1813 2.6522 10 6 1.4636 -4.5992 2.5473 11 8 2.0330 -5.2561 1.4130 12 6 1.6345 -6.5334 1.1754 13 6 0.7152 -7.1423 2.0169 14 6 0.3112 -8.4409 1.7728 15 6 0.8228 -9.1334 0.6912 16 6 1.7402 -8.5290 -0.1486 17 6 2.1469 -7.2308 0.0909 18 6 3.1463 -6.5726 -0.8251 19 8 2.4747 -5.6322 -1.6657 20 14 3.9711 -7.8690 -1.8786 21 1 2.9458 -8.5738 -2.6894 22 1 4.9563 -7.2203 -2.7808 23 1 4.6690 -8.8462 -1.0050 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.8937 -0.5134 3.9323 34 1 1.8933 1.0277 3.0422 35 1 0.4400 0.0001 3.0423 36 1 4.3777 -1.3911 0.6317 37 1 4.3769 0.1503 1.5218 38 1 4.3773 -1.3917 2.4114 39 1 1.6636 -2.7110 3.5653 40 1 3.1173 -3.2251 2.6761 41 1 0.3806 -4.5515 2.4337 42 1 1.7100 -5.1563 3.4513 43 1 0.3147 -6.6015 2.8616 44 1 -0.4082 -8.9138 2.4250 45 1 0.5061 -10.1485 0.5024 46 1 2.1388 -9.0722 -0.9927 47 1 3.8989 -6.0553 -0.2300 48 1 3.0581 -5.1693 -2.2826 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26800_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:52:17 Heat of formation + Delta-G solvation = -145.831283 kcal Electronic energy + Delta-G solvation = -25062.365376 eV Core-core repulsion = 21626.838504 eV Total energy + Delta-G solvation = -3435.526872 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.172 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19743 -38.89128 -37.53543 -37.29868 -36.79820 -32.77616 -31.45913 -30.12646 -29.36003 -29.07933 -27.83608 -27.35563 -26.50022 -24.70080 -22.65715 -22.09043 -20.38635 -19.18729 -18.33417 -18.04086 -17.24954 -16.86468 -16.38947 -16.15494 -15.77088 -15.74151 -15.28008 -15.08891 -14.91782 -14.83255 -14.67249 -14.22099 -14.02369 -13.83647 -13.57892 -13.52396 -13.42055 -13.24874 -12.99686 -12.91546 -12.88991 -12.68865 -12.59418 -12.37429 -12.11579 -11.97942 -11.79922 -11.69282 -11.66437 -11.59349 -11.49713 -11.26000 -10.36558 -10.12113 -10.04705 -9.84990 -9.02978 0.33857 0.56408 1.23917 1.45201 1.50077 1.55756 1.75095 1.96714 2.05822 2.26311 2.43714 2.78444 3.60137 3.80429 3.89642 4.01169 4.04505 4.14584 4.15538 4.17538 4.21054 4.24421 4.34367 4.41138 4.50596 4.58266 4.62869 4.65186 4.70060 4.72063 4.74689 4.76965 4.83203 4.89675 5.03737 5.06674 5.13920 5.15345 5.20504 5.35866 5.37573 5.40883 5.44610 5.46471 5.53419 5.54900 5.60933 5.60988 5.85836 6.53316 6.79220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.286 2.714 6 C -0.513 4.513 7 C -0.510 4.510 8 O -0.615 6.615 9 C 0.088 3.912 10 C 0.055 3.945 11 O -0.292 6.292 12 C 0.159 3.841 13 C -0.213 4.213 14 C -0.073 4.073 15 C -0.155 4.155 16 C -0.085 4.085 17 C -0.110 4.110 18 C -0.068 4.068 19 O -0.538 6.538 20 Si 0.942 3.058 21 H -0.248 1.248 22 H -0.256 1.256 23 H -0.249 1.249 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.074 0.926 48 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 0.074 2.578 2.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.417 2.583 6 C -0.614 4.614 7 C -0.612 4.612 8 O -0.574 6.574 9 C 0.012 3.988 10 C -0.020 4.020 11 O -0.205 6.205 12 C 0.112 3.888 13 C -0.232 4.232 14 C -0.091 4.091 15 C -0.173 4.173 16 C -0.103 4.103 17 C -0.111 4.111 18 C -0.178 4.178 19 O -0.343 6.343 20 Si 0.765 3.235 21 H -0.172 1.172 22 H -0.181 1.181 23 H -0.173 1.173 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.092 0.908 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.912 -0.825 2.163 2.488 hybrid contribution 0.269 0.987 0.329 1.075 sum 1.181 0.162 2.492 2.762 Atomic orbital electron populations 1.21507 0.93867 1.02039 1.01677 1.25762 1.00636 1.02489 1.12817 1.21560 1.00739 0.95008 1.02078 1.21503 1.00495 1.00525 0.96548 0.76744 0.63095 0.53441 0.64995 1.27058 1.07023 1.09577 1.17768 1.27022 1.25058 1.04595 1.04510 1.85426 1.78988 1.45865 1.47165 1.22055 0.99225 0.89833 0.87656 1.23014 0.99244 0.91947 0.87843 1.86182 1.64235 1.23359 1.46729 1.18741 0.92802 0.83814 0.93402 1.21295 1.02235 0.97406 1.02233 1.21008 0.97915 0.93542 0.96667 1.20993 0.99297 1.00733 0.96293 1.20940 0.96740 0.93688 0.98910 1.18584 1.02384 0.94075 0.96072 1.24522 0.97675 0.99294 0.96348 1.86559 1.37564 1.57210 1.52954 0.85875 0.79049 0.78750 0.79856 1.17196 1.18056 1.17273 0.92823 0.92824 0.92112 0.92553 0.92530 0.92602 0.91777 0.92929 0.92807 0.91552 0.90684 0.90862 0.90762 0.90817 0.91569 0.90577 0.91550 0.90755 0.90789 0.85224 0.85499 0.85469 0.85458 0.90832 0.77795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.08 7.85 37.16 0.29 0.21 16 2 C -0.37 -0.05 0.53 -90.62 -0.05 -0.10 16 3 C -0.14 0.04 7.85 37.16 0.29 0.34 16 4 C -0.13 -0.09 7.85 37.15 0.29 0.20 16 5 Si 1.29 -1.04 8.45 -169.99 -1.44 -2.48 16 6 C -0.51 0.46 8.50 101.05 0.86 1.31 16 7 C -0.51 0.26 8.50 101.05 0.86 1.12 16 8 O -0.62 -0.55 8.52 -40.08 -0.34 -0.89 16 9 C 0.09 -0.08 5.51 37.15 0.20 0.12 16 10 C 0.05 -0.01 5.12 37.15 0.19 0.18 16 11 O -0.29 -0.87 9.44 -24.27 -0.23 -1.10 16 12 C 0.16 0.51 6.66 -39.22 -0.26 0.25 16 13 C -0.21 -0.34 9.04 -39.43 -0.36 -0.69 16 14 C -0.07 -0.07 10.04 -39.60 -0.40 -0.47 16 15 C -0.15 -0.21 10.04 -39.56 -0.40 -0.60 16 16 C -0.09 -0.20 8.66 -39.61 -0.34 -0.54 16 17 C -0.11 -0.36 5.30 -104.47 -0.55 -0.91 16 18 C -0.07 -0.12 2.37 36.01 0.09 -0.04 16 19 O -0.54 -1.32 12.86 -35.23 -0.45 -1.78 16 20 Si 0.94 0.57 25.49 -169.99 -4.33 -3.76 16 21 H -0.25 -0.36 6.73 56.52 0.38 0.02 16 22 H -0.26 -0.15 7.11 56.52 0.40 0.25 16 23 H -0.25 -0.27 7.11 56.52 0.40 0.14 16 24 H 0.05 -0.01 7.79 -51.93 -0.40 -0.41 16 25 H 0.05 0.05 8.14 -51.93 -0.42 -0.38 16 26 H 0.06 0.07 7.96 -51.93 -0.41 -0.34 16 27 H 0.06 -0.05 7.79 -51.93 -0.40 -0.46 16 28 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 29 H 0.05 -0.06 7.79 -51.93 -0.40 -0.46 16 30 H 0.06 0.10 7.97 -51.92 -0.41 -0.32 16 31 H 0.05 0.05 8.14 -51.93 -0.42 -0.38 16 32 H 0.05 0.00 7.79 -51.93 -0.40 -0.40 16 33 H 0.07 -0.10 7.48 -51.93 -0.39 -0.49 16 34 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 35 H 0.07 -0.05 7.79 -51.93 -0.40 -0.45 16 36 H 0.07 0.00 7.79 -51.93 -0.40 -0.41 16 37 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 38 H 0.07 -0.06 7.48 -51.93 -0.39 -0.45 16 39 H 0.08 -0.26 7.21 -51.93 -0.37 -0.63 16 40 H 0.07 -0.12 7.22 -51.93 -0.37 -0.49 16 41 H 0.07 -0.02 7.66 -51.93 -0.40 -0.42 16 42 H 0.07 -0.18 7.66 -51.92 -0.40 -0.58 16 43 H 0.13 -0.08 6.30 -52.49 -0.33 -0.41 16 44 H 0.13 -0.16 8.06 -52.49 -0.42 -0.58 16 45 H 0.13 -0.10 8.06 -52.49 -0.42 -0.52 16 46 H 0.13 0.12 4.89 -52.49 -0.26 -0.14 16 47 H 0.07 0.07 7.83 -51.93 -0.41 -0.34 16 48 H 0.38 -0.73 8.74 45.56 0.40 -0.33 16 LS Contribution 380.79 15.07 5.74 5.74 Total: 0.00 -5.99 380.79 -8.25 -14.24 By element: Atomic # 1 Polarization: -2.44 SS G_CDS: -7.91 Total: -10.35 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 0.71 Total: 0.38 kcal Atomic # 8 Polarization: -2.74 SS G_CDS: -1.02 Total: -3.77 kcal Atomic # 14 Polarization: -0.47 SS G_CDS: -5.77 Total: -6.24 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -5.99 -8.25 -14.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26800_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.587 kcal (2) G-P(sol) polarization free energy of solvation -5.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds