Wall clock time and date at job start Tue Mar 9 2021 15:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47425 * 2 1 4 4 C 1.53004 * 109.46862 * 240.00074 * 2 1 3 5 5 O 1.45192 * 109.47335 * 120.00352 * 2 1 3 6 6 C 1.34642 * 117.00255 * 59.99455 * 5 2 1 7 7 O 1.21512 * 119.99518 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99897 * 179.97438 * 6 5 2 9 9 C 1.46500 * 119.99744 * 179.97438 * 8 6 5 10 10 H 1.09001 * 112.85323 * 336.20412 * 9 8 6 11 11 C 1.53780 * 113.61387 * 107.50536 * 9 8 6 12 12 C 1.53779 * 87.08186 * 89.11888 * 11 9 8 13 13 H 1.08996 * 113.69080 * 270.87449 * 12 11 9 14 14 C 1.53001 * 113.61744 * 139.98128 * 12 11 9 15 15 O 1.42904 * 109.46836 * 87.50335 * 14 12 11 16 16 C 1.35906 * 116.99563 * 180.02562 * 15 14 12 17 17 C 1.38711 * 120.04992 * 179.97438 * 16 15 14 18 18 C 1.50694 * 120.03053 * 0.02562 * 17 16 15 19 19 O 1.42908 * 109.46882 * 285.01405 * 18 17 16 20 20 Si 1.86299 * 109.47321 * 165.02126 * 18 17 16 21 21 C 1.38169 * 119.94094 * 180.02562 * 17 16 15 22 22 C 1.38242 * 120.05494 * 0.03192 * 21 17 16 23 23 C 1.38295 * 120.11401 * 359.94904 * 22 21 17 24 24 C 1.38122 * 120.05026 * 0.02562 * 23 22 21 25 25 C 1.53780 * 113.61703 * 205.00340 * 9 8 6 26 26 H 1.09007 * 109.47109 * 299.99810 * 1 2 3 27 27 H 1.09005 * 109.47362 * 59.99227 * 1 2 3 28 28 H 1.08995 * 109.47434 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47274 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46768 * 300.00519 * 3 2 1 31 31 H 1.08998 * 109.46706 * 59.99779 * 3 2 1 32 32 H 1.08995 * 109.47138 * 300.00233 * 4 2 1 33 33 H 1.09006 * 109.47285 * 60.00364 * 4 2 1 34 34 H 1.08995 * 109.47131 * 180.02562 * 4 2 1 35 35 H 0.97001 * 120.00745 * 0.02562 * 8 6 5 36 36 H 1.09004 * 113.61666 * 334.56876 * 11 9 8 37 37 H 1.09000 * 113.61427 * 203.66407 * 11 9 8 38 38 H 1.09005 * 109.46930 * 327.50318 * 14 12 11 39 39 H 1.08999 * 109.47210 * 207.50248 * 14 12 11 40 40 H 1.08994 * 109.47590 * 45.02102 * 18 17 16 41 41 H 0.96703 * 113.99965 * 180.02562 * 19 18 17 42 42 H 1.48502 * 110.00389 * 59.99383 * 20 18 17 43 43 H 1.48496 * 110.00555 * 181.31572 * 20 18 17 44 44 H 1.07998 * 119.97347 * 179.97438 * 21 17 16 45 45 H 1.07997 * 119.94707 * 179.97438 * 22 21 17 46 46 H 1.07997 * 119.97026 * 179.74858 * 23 22 21 47 47 H 1.08002 * 120.02294 * 179.97438 * 24 23 22 48 48 H 1.09001 * 113.61548 * 156.33812 * 25 9 8 49 49 H 1.08999 * 113.61316 * 25.43530 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1854 6 6 1.6522 -1.9724 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0681 -2.6657 2.4165 9 6 1.6739 -4.0668 2.5830 10 1 0.7591 -4.3160 2.0453 11 6 2.8215 -5.0622 2.3441 12 6 3.1501 -4.9214 3.8397 13 1 3.8470 -4.1131 4.0609 14 6 3.5396 -6.2412 4.5086 15 8 4.9451 -6.4535 4.3607 16 6 5.4577 -7.5898 4.9022 17 6 6.8141 -7.8595 4.7953 18 6 7.7212 -6.8926 4.0791 19 8 7.5219 -7.0080 2.6687 20 14 9.4955 -7.2852 4.4895 21 6 7.3328 -9.0156 5.3462 22 6 6.5010 -9.9034 6.0028 23 6 5.1484 -9.6365 6.1110 24 6 4.6252 -8.4819 5.5625 25 6 1.6755 -4.5375 4.0470 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6765 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1393 34 1 3.1299 -0.7217 -1.2491 35 1 2.6277 -2.2370 3.0827 36 1 3.6025 -4.6787 1.6874 37 1 2.4831 -6.0596 2.0634 38 1 2.9968 -7.0611 4.0381 39 1 3.2880 -6.1997 5.5683 40 1 7.4914 -5.8755 4.3965 41 1 8.0749 -6.4136 2.1433 42 1 9.8216 -8.6694 4.0617 43 1 10.3989 -6.3190 3.8145 44 1 8.3887 -9.2264 5.2629 45 1 6.9082 -10.8067 6.4324 46 1 4.5001 -10.3336 6.6209 47 1 3.5687 -8.2741 5.6469 48 1 1.0238 -5.3914 4.2319 49 1 1.5313 -3.7303 4.7653 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26800_15734082.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:52:43 Heat of formation + Delta-G solvation = -92.026581 kcal Electronic energy + Delta-G solvation = -29256.444854 eV Core-core repulsion = 25151.822230 eV Total energy + Delta-G solvation = -4104.622625 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.182 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.01424 -41.36792 -40.37552 -38.56092 -37.83264 -37.60024 -35.40676 -34.14658 -32.83635 -31.14042 -29.26086 -28.40966 -28.33888 -26.78294 -26.62589 -24.98718 -23.61935 -22.75558 -22.23736 -21.20598 -20.29459 -19.38958 -19.07643 -18.57450 -17.67824 -17.36890 -17.22467 -16.98657 -16.78247 -16.50418 -16.06955 -15.62584 -15.51660 -15.43876 -15.14490 -15.03765 -14.80180 -14.45987 -14.17725 -13.92594 -13.67276 -13.52686 -13.38639 -13.35691 -13.16808 -12.99014 -12.95628 -12.90915 -12.64842 -12.55028 -12.37570 -12.07657 -12.01924 -11.83647 -11.69182 -11.60694 -11.44124 -11.22428 -11.16646 -10.43517 -10.23961 -9.96033 -9.15535 -4.95457 0.23809 0.45598 1.08169 1.28801 1.56898 1.67110 1.90098 2.18537 2.67709 3.06261 3.37155 3.46047 3.48421 3.70060 3.72762 3.76088 3.77354 3.79955 3.90337 3.94340 4.13151 4.20167 4.26194 4.32167 4.41461 4.43783 4.48888 4.53183 4.57200 4.57936 4.67684 4.70794 4.72196 4.72463 4.79079 4.83830 4.85262 4.96109 4.99392 5.00254 5.03676 5.13581 5.23065 5.27889 5.32352 5.40042 5.43427 5.53626 5.56837 5.81285 6.32511 6.43149 6.59297 7.27777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.370 6.370 6 C 0.646 3.354 7 O -0.593 6.593 8 N -0.684 5.684 9 C 0.131 3.869 10 H 0.096 0.904 11 C -0.147 4.147 12 C -0.102 4.102 13 H 0.101 0.899 14 C 0.063 3.937 15 O -0.321 6.321 16 C 0.135 3.865 17 C -0.132 4.132 18 C -0.077 4.077 19 O -0.556 6.556 20 Si 0.771 3.229 21 C -0.091 4.091 22 C -0.160 4.160 23 C -0.077 4.077 24 C -0.217 4.217 25 C -0.116 4.116 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.417 0.583 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.389 0.611 42 H -0.290 1.290 43 H -0.287 1.287 44 H 0.140 0.860 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.147 0.853 48 H 0.119 0.881 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 1.612 5.733 5.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.400 3.600 7 O -0.483 6.483 8 N -0.343 5.343 9 C 0.027 3.973 10 H 0.114 0.886 11 C -0.186 4.186 12 C -0.120 4.120 13 H 0.119 0.881 14 C -0.012 4.012 15 O -0.235 6.235 16 C 0.089 3.911 17 C -0.133 4.133 18 C -0.185 4.185 19 O -0.366 6.366 20 Si 0.676 3.324 21 C -0.108 4.108 22 C -0.178 4.178 23 C -0.095 4.095 24 C -0.235 4.235 25 C -0.153 4.153 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.254 0.746 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.238 0.762 42 H -0.218 1.218 43 H -0.214 1.214 44 H 0.157 0.843 45 H 0.166 0.834 46 H 0.168 0.832 47 H 0.165 0.835 48 H 0.138 0.862 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.092 0.943 5.049 5.138 hybrid contribution -0.058 0.419 -1.221 1.292 sum -0.150 1.363 3.829 4.067 Atomic orbital electron populations 1.22474 0.93884 1.03726 1.03624 1.22366 0.94581 0.92570 0.81378 1.21896 1.02419 0.90809 1.04349 1.22482 1.01560 1.02253 0.97517 1.86310 1.71528 1.23226 1.47350 1.18315 0.78567 0.80742 0.82423 1.90906 1.42313 1.71052 1.44074 1.44371 1.54906 1.11840 1.23192 1.21846 0.98351 0.78048 0.99104 0.88557 1.23543 0.98154 1.00115 0.96739 1.22583 0.97675 0.96617 0.95143 0.88080 1.23047 0.78540 0.97941 1.01639 1.86095 1.26054 1.37837 1.73471 1.18997 0.92436 0.86597 0.93030 1.18861 0.91889 0.98159 1.04383 1.24906 1.10204 1.00785 0.82626 1.86579 1.66704 1.66317 1.16957 0.94128 0.71334 0.76612 0.90341 1.21154 1.00770 0.92314 0.96590 1.21348 0.93888 1.00827 1.01703 1.21371 0.95698 0.95947 0.96512 1.21556 1.00844 0.96921 1.04214 1.23314 0.94705 1.02889 0.94441 0.91772 0.89410 0.91795 0.91265 0.88246 0.91030 0.91881 0.89351 0.92099 0.74638 0.92553 0.88456 0.91230 0.90092 0.90550 0.76193 1.21757 1.21444 0.84271 0.83395 0.83171 0.83536 0.86233 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.65 8.37 71.98 0.60 -0.04 16 2 C 0.13 0.46 1.13 -10.79 -0.01 0.45 16 3 C -0.14 0.22 8.85 71.98 0.64 0.86 16 4 C -0.18 -0.78 8.37 71.98 0.60 -0.18 16 5 O -0.37 -2.32 9.94 -55.51 -0.55 -2.87 16 6 C 0.65 4.89 8.06 129.79 1.05 5.94 16 7 O -0.59 -7.69 11.48 19.80 0.23 -7.47 16 8 N -0.68 -0.80 5.27 -567.61 -2.99 -3.79 16 9 C 0.13 -0.10 4.32 45.52 0.20 0.10 16 10 H 0.10 0.24 7.46 -2.39 -0.02 0.23 16 11 C -0.15 0.01 7.43 31.12 0.23 0.24 16 12 C -0.10 0.38 3.89 -10.27 -0.04 0.34 16 13 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 14 C 0.06 -0.14 4.58 71.98 0.33 0.19 16 15 O -0.32 -1.61 9.47 -92.49 -0.88 -2.48 16 16 C 0.14 0.76 6.66 22.50 0.15 0.91 16 17 C -0.13 -0.79 5.30 -19.77 -0.10 -0.89 16 18 C -0.08 -0.32 2.37 71.23 0.17 -0.15 16 19 O -0.56 -4.08 12.86 -148.98 -1.92 -5.99 16 20 Si 0.77 0.33 30.20 68.60 2.07 2.40 16 21 C -0.09 -0.29 8.66 22.25 0.19 -0.10 16 22 C -0.16 -0.11 10.04 22.28 0.22 0.12 16 23 C -0.08 0.01 10.04 22.26 0.22 0.23 16 24 C -0.22 -0.35 9.04 22.36 0.20 -0.15 16 25 C -0.12 0.79 7.39 31.12 0.23 1.02 16 26 H 0.06 0.17 8.14 -2.38 -0.02 0.15 16 27 H 0.09 0.01 8.14 -2.38 -0.02 -0.01 16 28 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 29 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.06 0.62 5.88 -2.39 -0.01 0.60 16 33 H 0.09 0.06 8.14 -2.38 -0.02 0.04 16 34 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.42 -1.34 8.81 -92.71 -0.82 -2.16 16 36 H 0.06 0.24 8.14 -2.38 -0.02 0.22 16 37 H 0.10 -0.05 7.90 -2.39 -0.02 -0.07 16 38 H 0.07 -0.22 7.36 -2.38 -0.02 -0.24 16 39 H 0.08 -0.44 7.66 -2.39 -0.02 -0.46 16 40 H 0.08 0.21 7.83 -2.39 -0.02 0.19 16 41 H 0.39 -0.21 8.74 -74.06 -0.65 -0.85 16 42 H -0.29 -1.75 6.75 99.48 0.67 -1.08 16 43 H -0.29 -1.25 7.11 99.48 0.71 -0.55 16 44 H 0.14 0.09 4.90 -2.91 -0.01 0.08 16 45 H 0.15 -0.60 8.06 -2.91 -0.02 -0.62 16 46 H 0.15 -0.80 8.06 -2.91 -0.02 -0.82 16 47 H 0.15 -0.44 6.30 -2.91 -0.02 -0.46 16 48 H 0.12 -1.16 8.10 -2.39 -0.02 -1.18 16 49 H 0.10 -0.84 8.14 -2.39 -0.02 -0.86 16 Total: 0.00 -19.91 391.93 0.35 -19.56 By element: Atomic # 1 Polarization: -7.75 SS G_CDS: -0.50 Total: -8.25 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 4.88 Total: 8.88 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -2.99 Total: -3.79 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -3.12 Total: -18.81 kcal Atomic # 14 Polarization: 0.33 SS G_CDS: 2.07 Total: 2.40 kcal Total: -19.91 0.35 -19.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26800_15734082.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.466 kcal (2) G-P(sol) polarization free energy of solvation -19.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds