Wall clock time and date at job start Tue Mar 9 2021 15:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47334 * 2 1 4 4 C 1.53000 * 109.47232 * 239.99586 * 2 1 3 5 5 O 1.45206 * 109.46784 * 119.99759 * 2 1 3 6 6 C 1.34629 * 116.99837 * 60.00144 * 5 2 1 7 7 O 1.21511 * 120.00556 * 359.97438 * 6 5 2 8 8 N 1.34782 * 119.99817 * 180.02562 * 6 5 2 9 9 C 1.46505 * 120.00050 * 179.97438 * 8 6 5 10 10 H 1.08997 * 112.90495 * 23.74673 * 9 8 6 11 11 C 1.53779 * 113.61253 * 154.99702 * 9 8 6 12 12 C 1.53787 * 87.07927 * 139.97957 * 11 9 8 13 13 H 1.09001 * 113.61348 * 89.19842 * 12 11 9 14 14 C 1.53000 * 113.61585 * 220.01823 * 12 11 9 15 15 O 1.42895 * 109.46907 * 185.00347 * 14 12 11 16 16 C 1.35901 * 117.00002 * 180.02562 * 15 14 12 17 17 C 1.38709 * 120.05787 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.02762 * 359.95504 * 17 16 15 19 19 O 1.42903 * 109.46812 * 284.99740 * 18 17 16 20 20 Si 1.86303 * 109.47122 * 165.00264 * 18 17 16 21 21 C 1.38171 * 119.94081 * 179.97438 * 17 16 15 22 22 C 1.38240 * 120.06065 * 0.02562 * 21 17 16 23 23 C 1.38295 * 120.10794 * 0.02562 * 22 21 17 24 24 C 1.38120 * 120.05704 * 359.97438 * 23 22 21 25 25 C 1.53774 * 113.61243 * 252.49515 * 9 8 6 26 26 H 1.08995 * 109.47162 * 300.01030 * 1 2 3 27 27 H 1.09003 * 109.46769 * 60.00197 * 1 2 3 28 28 H 1.08994 * 109.47095 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46858 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46750 * 299.99235 * 3 2 1 31 31 H 1.08988 * 109.47609 * 59.99694 * 3 2 1 32 32 H 1.09001 * 109.47040 * 300.00348 * 4 2 1 33 33 H 1.08999 * 109.47539 * 60.00344 * 4 2 1 34 34 H 1.09003 * 109.47388 * 180.02562 * 4 2 1 35 35 H 0.96992 * 120.00213 * 359.97438 * 8 6 5 36 36 H 1.08995 * 113.61797 * 25.43369 * 11 9 8 37 37 H 1.08997 * 113.69087 * 254.53829 * 11 9 8 38 38 H 1.09001 * 109.46974 * 64.99691 * 14 12 11 39 39 H 1.09003 * 109.46725 * 304.99753 * 14 12 11 40 40 H 1.08994 * 109.47600 * 44.99862 * 18 17 16 41 41 H 0.96698 * 114.00104 * 300.00361 * 19 18 17 42 42 H 1.48505 * 110.00066 * 179.97438 * 20 18 17 43 43 H 1.48498 * 109.99815 * 301.31442 * 20 18 17 44 44 H 1.08005 * 119.97011 * 180.02562 * 21 17 16 45 45 H 1.07995 * 119.94494 * 180.27435 * 22 21 17 46 46 H 1.07997 * 119.96986 * 179.97438 * 23 22 21 47 47 H 1.08001 * 120.02621 * 180.02562 * 24 23 22 48 48 H 1.09007 * 113.61410 * 105.47005 * 25 9 8 49 49 H 1.09002 * 113.61862 * 334.56500 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1857 6 6 1.6522 -1.9722 1.3384 7 8 0.9508 -2.5094 0.5041 8 7 2.0671 -2.6653 2.4173 9 6 1.6729 -4.0665 2.5839 10 1 1.4195 -4.5509 1.6409 11 6 2.6458 -4.8809 3.4529 12 6 1.4079 -5.5534 4.0697 13 1 1.0829 -6.4452 3.5338 14 6 1.5193 -5.7751 5.5795 15 8 0.3801 -6.5052 6.0389 16 6 0.3227 -6.7874 7.3671 17 6 -0.7547 -7.4936 7.8814 18 6 -1.8638 -7.9480 6.9679 19 8 -2.6818 -6.8295 6.6188 20 14 -2.9005 -9.2277 7.8388 21 6 -0.8104 -7.7796 9.2320 22 6 0.2062 -7.3622 10.0707 23 6 1.2809 -6.6570 9.5605 24 6 1.3413 -6.3686 8.2111 25 6 0.6265 -4.2847 3.6893 26 1 -0.3633 0.5140 0.8898 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9562 -0.8901 31 1 1.6768 1.9563 0.8898 32 1 1.6766 -1.7490 -1.2491 33 1 1.6768 -0.2076 -2.1392 34 1 3.1301 -0.7217 -1.2490 35 1 2.6266 -2.2365 3.0835 36 1 3.2114 -4.2747 4.1604 37 1 3.2753 -5.5641 2.8828 38 1 1.5615 -4.8109 6.0861 39 1 2.4253 -6.3403 5.7978 40 1 -1.4356 -8.3811 6.0640 41 1 -3.0962 -6.3938 7.3760 42 1 -3.9983 -9.6836 6.9486 43 1 -2.0550 -10.3822 8.2353 44 1 -1.6489 -8.3298 9.6329 45 1 0.1630 -7.5906 11.1253 46 1 2.0737 -6.3317 10.2178 47 1 2.1810 -5.8182 7.8132 48 1 -0.3750 -4.4864 3.3089 49 1 0.6401 -3.5156 4.4616 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26800_15734236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:52:45 Heat of formation + Delta-G solvation = -97.733290 kcal Electronic energy + Delta-G solvation = -29092.563217 eV Core-core repulsion = 24987.693131 eV Total energy + Delta-G solvation = -4104.870086 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.182 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.96545 -41.39669 -40.33573 -38.58835 -37.84774 -37.44593 -35.45084 -34.27766 -32.67248 -31.12647 -29.24515 -28.40790 -28.33398 -26.80716 -26.63950 -25.09567 -23.41689 -22.64327 -22.08752 -21.44173 -20.56136 -19.34544 -19.06049 -18.17448 -17.76167 -17.24535 -17.07210 -17.02981 -16.79513 -16.34754 -16.14819 -15.85670 -15.56554 -15.39214 -15.28278 -14.98113 -14.59840 -14.37336 -14.25648 -14.04842 -13.52994 -13.43917 -13.39192 -13.24192 -13.06422 -12.96931 -12.90524 -12.90051 -12.59920 -12.53432 -12.32588 -12.21907 -12.17396 -11.96626 -11.85042 -11.63523 -11.43592 -11.32517 -11.15026 -10.36877 -10.20809 -9.94416 -9.15525 -5.03318 0.25961 0.45877 1.12236 1.30850 1.63456 1.68537 1.95644 2.18180 2.73460 3.10938 3.34416 3.45312 3.56467 3.69421 3.70684 3.71606 3.76499 3.78433 3.90868 3.93970 4.06652 4.21382 4.23392 4.27795 4.38696 4.44338 4.48630 4.54430 4.57495 4.60073 4.63957 4.68236 4.72689 4.74562 4.76946 4.82577 4.84268 4.90629 4.97940 5.00073 5.04495 5.15464 5.23319 5.28339 5.33385 5.40032 5.44041 5.55068 5.55548 5.83214 6.35727 6.44826 6.80671 7.29743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.127 3.873 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.643 3.357 7 O -0.596 6.596 8 N -0.688 5.688 9 C 0.136 3.864 10 H 0.103 0.897 11 C -0.115 4.115 12 C -0.103 4.103 13 H 0.097 0.903 14 C 0.068 3.932 15 O -0.325 6.325 16 C 0.131 3.869 17 C -0.174 4.174 18 C -0.066 4.066 19 O -0.555 6.555 20 Si 0.785 3.215 21 C -0.080 4.080 22 C -0.158 4.158 23 C -0.079 4.079 24 C -0.219 4.219 25 C -0.144 4.144 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.418 0.582 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.391 0.609 42 H -0.302 1.302 43 H -0.285 1.285 44 H 0.156 0.844 45 H 0.152 0.848 46 H 0.148 0.852 47 H 0.143 0.857 48 H 0.057 0.943 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.690 2.772 6.248 7.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.396 3.604 7 O -0.487 6.487 8 N -0.348 5.348 9 C 0.032 3.968 10 H 0.121 0.879 11 C -0.153 4.153 12 C -0.122 4.122 13 H 0.115 0.885 14 C -0.006 4.006 15 O -0.238 6.238 16 C 0.085 3.915 17 C -0.175 4.175 18 C -0.175 4.175 19 O -0.363 6.363 20 Si 0.690 3.310 21 C -0.097 4.097 22 C -0.176 4.176 23 C -0.097 4.097 24 C -0.237 4.237 25 C -0.183 4.183 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.256 0.744 36 H 0.133 0.867 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.240 0.760 42 H -0.230 1.230 43 H -0.212 1.212 44 H 0.173 0.827 45 H 0.170 0.830 46 H 0.166 0.834 47 H 0.160 0.840 48 H 0.076 0.924 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.129 1.585 5.007 6.113 hybrid contribution 0.687 0.224 -0.503 0.880 sum 3.816 1.809 4.503 6.173 Atomic orbital electron populations 1.22478 0.94191 1.03600 1.03531 1.22359 0.94368 0.92672 0.81528 1.21890 1.02514 0.90750 1.04273 1.22475 1.01699 1.02190 0.97369 1.86310 1.71519 1.23255 1.47288 1.18444 0.78609 0.80815 0.82510 1.90907 1.42221 1.70974 1.44578 1.44740 1.54933 1.12149 1.22947 1.22525 0.96812 0.78747 0.98727 0.87938 1.23328 0.95664 0.98179 0.98171 1.22257 0.98203 0.98083 0.93621 0.88498 1.22958 0.87322 0.96112 0.94256 1.86125 1.45424 1.71253 1.21032 1.19071 0.94436 0.94863 0.83086 1.19861 0.97248 1.04910 0.95442 1.25076 0.93975 0.96968 1.01496 1.86502 1.65249 1.46612 1.37935 0.93972 0.77256 0.75991 0.83765 1.21121 0.99431 0.98118 0.91033 1.21408 0.94397 1.00421 1.01373 1.21373 0.98340 0.95592 0.94410 1.21541 1.00222 1.06759 0.95219 1.23573 0.98528 0.97646 0.98533 0.91962 0.89406 0.91974 0.91056 0.88294 0.91165 0.91919 0.89436 0.91804 0.74406 0.86750 0.88776 0.90647 0.90499 0.89451 0.75989 1.23009 1.21177 0.82666 0.83041 0.83446 0.83954 0.92396 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.82 8.37 71.98 0.60 -0.22 16 2 C 0.13 0.48 1.13 -10.79 -0.01 0.47 16 3 C -0.14 0.22 8.85 71.98 0.64 0.86 16 4 C -0.18 -0.73 8.37 71.98 0.60 -0.13 16 5 O -0.37 -2.31 9.94 -55.38 -0.55 -2.86 16 6 C 0.64 5.01 8.06 129.79 1.05 6.05 16 7 O -0.60 -8.16 11.48 19.81 0.23 -7.93 16 8 N -0.69 -0.65 5.36 -567.61 -3.04 -3.69 16 9 C 0.14 0.01 4.24 45.51 0.19 0.20 16 10 H 0.10 0.44 7.47 -2.39 -0.02 0.43 16 11 C -0.12 0.68 7.39 31.12 0.23 0.91 16 12 C -0.10 0.19 4.01 -10.27 -0.04 0.15 16 13 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 14 C 0.07 -0.11 4.58 71.98 0.33 0.22 16 15 O -0.32 -1.87 9.47 -92.44 -0.88 -2.74 16 16 C 0.13 0.60 6.66 22.51 0.15 0.75 16 17 C -0.17 -0.57 5.27 -19.77 -0.10 -0.68 16 18 C -0.07 -0.28 2.38 71.23 0.17 -0.11 16 19 O -0.56 -2.91 12.88 -148.98 -1.92 -4.82 16 20 Si 0.78 0.14 29.92 68.60 2.05 2.20 16 21 C -0.08 0.11 8.66 22.25 0.19 0.30 16 22 C -0.16 0.42 10.04 22.28 0.22 0.64 16 23 C -0.08 0.16 10.04 22.26 0.22 0.38 16 24 C -0.22 -0.09 9.04 22.37 0.20 0.11 16 25 C -0.14 -0.09 7.43 31.12 0.23 0.14 16 26 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.06 0.64 5.88 -2.39 -0.01 0.62 16 29 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.06 0.60 5.88 -2.39 -0.01 0.59 16 33 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.06 0.19 8.14 -2.39 -0.02 0.18 16 35 H 0.42 -1.86 8.84 -92.71 -0.82 -2.68 16 36 H 0.11 -1.14 8.08 -2.39 -0.02 -1.16 16 37 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.08 -0.30 7.36 -2.39 -0.02 -0.31 16 39 H 0.08 -0.33 7.67 -2.39 -0.02 -0.34 16 40 H 0.09 0.71 7.83 -2.39 -0.02 0.70 16 41 H 0.39 -1.42 8.70 -74.06 -0.64 -2.06 16 42 H -0.30 -2.38 7.11 99.48 0.71 -1.68 16 43 H -0.28 -1.33 7.11 99.48 0.71 -0.62 16 44 H 0.16 -1.07 5.13 -2.91 -0.01 -1.09 16 45 H 0.15 -1.15 8.06 -2.91 -0.02 -1.17 16 46 H 0.15 -0.98 8.06 -2.91 -0.02 -1.01 16 47 H 0.14 -0.51 6.30 -2.91 -0.02 -0.53 16 48 H 0.06 0.30 8.14 -2.38 -0.02 0.29 16 49 H 0.09 -0.07 7.90 -2.39 -0.02 -0.09 16 Total: 0.00 -21.21 392.33 0.31 -20.91 By element: Atomic # 1 Polarization: -10.64 SS G_CDS: -0.46 Total: -11.10 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 4.88 Total: 10.05 kcal Atomic # 7 Polarization: -0.65 SS G_CDS: -3.04 Total: -3.69 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -3.12 Total: -18.36 kcal Atomic # 14 Polarization: 0.14 SS G_CDS: 2.05 Total: 2.20 kcal Total: -21.21 0.31 -20.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26800_15734236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.825 kcal (2) G-P(sol) polarization free energy of solvation -21.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds