Wall clock time and date at job start Tue Mar 9 2021 15:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86300 * 109.47239 * 2 1 4 4 C 1.50696 * 109.47248 * 120.00293 * 2 1 3 5 5 C 1.38714 * 120.03000 * 75.02023 * 4 2 1 6 6 O 1.35901 * 120.05102 * 0.02562 * 5 4 2 7 7 C 1.42904 * 116.99755 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47073 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47020 * 304.99651 * 8 7 6 10 10 C 1.53003 * 109.47394 * 64.99696 * 8 7 6 11 11 C 1.52999 * 109.47055 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46879 * 300.00007 * 11 10 8 13 13 H 1.08999 * 109.47115 * 300.00098 * 12 11 10 14 14 O 1.42902 * 109.47205 * 180.02562 * 12 11 10 15 15 C 1.53003 * 109.47282 * 60.00133 * 12 11 10 16 16 C 1.52999 * 109.47055 * 299.99760 * 15 12 11 17 17 C 1.38749 * 119.89136 * 179.97438 * 5 4 2 18 18 C 1.38126 * 119.94135 * 359.97438 * 17 5 4 19 19 C 1.38290 * 120.05768 * 0.02562 * 18 17 5 20 20 C 1.38165 * 120.02666 * 254.99608 * 4 2 1 21 21 H 0.96704 * 113.99809 * 300.00126 * 1 2 3 22 22 H 1.09000 * 109.47050 * 240.00604 * 2 1 3 23 23 H 1.48496 * 110.00243 * 178.68181 * 3 2 1 24 24 H 1.48507 * 110.00194 * 300.00682 * 3 2 1 25 25 H 1.09003 * 109.46792 * 299.99749 * 7 6 5 26 26 H 1.08993 * 109.47273 * 59.99547 * 7 6 5 27 27 H 1.09002 * 109.46505 * 300.00184 * 10 8 7 28 28 H 1.08999 * 109.47074 * 59.99988 * 10 8 7 29 29 H 1.08995 * 109.46963 * 180.02562 * 11 10 8 30 30 H 1.08999 * 109.47327 * 59.99975 * 11 10 8 31 31 H 0.96701 * 113.99754 * 59.99148 * 14 12 11 32 32 H 1.09002 * 109.46505 * 179.97438 * 15 12 11 33 33 H 1.08999 * 109.47074 * 59.99940 * 15 12 11 34 34 H 1.08999 * 109.47327 * 300.00025 * 16 15 12 35 35 H 1.08995 * 109.46963 * 179.97438 * 16 15 12 36 36 H 1.07998 * 120.02700 * 180.02562 * 17 5 4 37 37 H 1.08005 * 119.97091 * 180.02562 * 18 17 5 38 38 H 1.07995 * 119.94278 * 180.27458 * 19 18 17 39 39 H 1.07997 * 119.97398 * 0.02562 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.8701 -2.0941 1.3067 6 8 1.3576 -2.8107 0.2719 7 6 1.3253 -4.2317 0.4200 8 6 0.7192 -4.8617 -0.8357 9 1 -0.2599 -4.4223 -1.0262 10 6 1.6372 -4.6001 -2.0315 11 6 1.0307 -5.2295 -3.2872 12 6 0.8806 -6.7380 -3.0799 13 1 1.8595 -7.1778 -2.8895 14 8 0.3147 -7.3260 -4.2529 15 6 -0.0374 -6.9996 -1.8841 16 6 0.5691 -6.3701 -0.6283 17 6 2.3339 -2.7453 2.4407 18 6 2.8558 -2.0147 3.4903 19 6 2.9158 -0.6353 3.4118 20 6 2.4538 0.0158 2.2832 21 1 -0.3933 0.4417 0.7651 22 1 1.7923 -0.5137 -0.8900 23 1 3.5346 1.7703 0.0321 24 1 1.5614 2.4680 -1.2084 25 1 2.3395 -4.6054 0.5612 26 1 0.7179 -4.4930 1.2865 27 1 1.7437 -3.5254 -2.1793 28 1 2.6163 -5.0395 -1.8409 29 1 1.6849 -5.0436 -4.1390 30 1 0.0517 -4.7897 -3.4776 31 1 0.8450 -7.1990 -5.0515 32 1 -0.1446 -8.0743 -1.7368 33 1 -1.0164 -6.5598 -2.0745 34 1 1.5480 -6.8099 -0.4379 35 1 -0.0851 -6.5561 0.2234 36 1 2.2877 -3.8226 2.5022 37 1 3.2174 -2.5212 4.3730 38 1 3.3283 -0.0662 4.2317 39 1 2.5017 1.0931 2.2244 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26800_16737254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:52:48 Heat of formation + Delta-G solvation = -108.692391 kcal Electronic energy + Delta-G solvation = -20519.032709 eV Core-core repulsion = 17392.634501 eV Total energy + Delta-G solvation = -3126.398208 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.140 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.42900 -40.15004 -38.59871 -37.41228 -36.65863 -32.76901 -32.02784 -31.88168 -30.63083 -26.81142 -26.61277 -23.88481 -23.49765 -22.60008 -21.91556 -20.90596 -19.24703 -18.21983 -17.96348 -17.13248 -17.04690 -16.64664 -16.27511 -15.85627 -15.55535 -15.47947 -15.00951 -14.90244 -14.76991 -14.27824 -14.07324 -13.69282 -13.46112 -13.28383 -13.24231 -12.98570 -12.60213 -12.34596 -12.19216 -12.03906 -11.96103 -11.79588 -11.60959 -11.54214 -11.15430 -10.74261 -10.30025 -9.97815 -9.15881 -5.00533 0.22502 0.43803 1.34992 1.68349 2.02231 2.14977 2.70012 3.13695 3.56098 3.56333 3.64198 3.68067 3.76842 3.86784 3.98488 4.06342 4.08170 4.12698 4.26133 4.29080 4.33471 4.35346 4.39870 4.43459 4.51141 4.57108 4.66672 4.73434 4.90125 4.95717 4.99323 5.04887 5.10441 5.10824 5.26079 5.30747 5.33443 5.37882 5.49456 5.74897 6.43057 6.69033 6.69558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.054 4.054 3 Si 0.680 3.320 4 C -0.156 4.156 5 C 0.156 3.844 6 O -0.301 6.301 7 C 0.062 3.938 8 C -0.087 4.087 9 H 0.086 0.914 10 C -0.110 4.110 11 C -0.152 4.152 12 C 0.103 3.897 13 H 0.054 0.946 14 O -0.569 6.569 15 C -0.111 4.111 16 C -0.109 4.109 17 C -0.212 4.212 18 C -0.073 4.073 19 C -0.155 4.155 20 C -0.076 4.076 21 H 0.375 0.625 22 H 0.111 0.889 23 H -0.257 1.257 24 H -0.254 1.254 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.379 0.621 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 0.382 3.557 3.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.165 4.165 3 Si 0.582 3.418 4 C -0.157 4.157 5 C 0.109 3.891 6 O -0.214 6.214 7 C -0.013 4.013 8 C -0.106 4.106 9 H 0.105 0.895 10 C -0.148 4.148 11 C -0.190 4.190 12 C 0.044 3.956 13 H 0.072 0.928 14 O -0.375 6.375 15 C -0.149 4.149 16 C -0.147 4.147 17 C -0.230 4.230 18 C -0.091 4.091 19 C -0.173 4.173 20 C -0.094 4.094 21 H 0.221 0.779 22 H 0.128 0.872 23 H -0.182 1.182 24 H -0.179 1.179 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.226 0.774 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.556 0.548 2.801 3.251 hybrid contribution 0.716 -0.661 -0.302 1.020 sum 2.272 -0.113 2.499 3.379 Atomic orbital electron populations 1.86548 1.17092 1.81588 1.48770 1.24869 0.85227 1.09165 0.97194 0.95090 0.81164 0.78085 0.87461 1.19705 1.06245 0.91283 0.98511 1.18772 0.92591 0.90744 0.86945 1.86137 1.77201 1.19337 1.38687 1.22912 1.00913 0.78451 0.99030 1.21217 1.00633 0.95271 0.93434 0.89545 1.21501 0.98238 1.01580 0.93474 1.22278 1.02207 0.96227 0.98287 1.21843 0.96089 0.91736 0.85891 0.92780 1.86518 1.52723 1.79312 1.18928 1.21439 0.99326 1.01606 0.92507 1.21472 1.01826 0.93472 0.97936 1.21326 1.06227 1.00551 0.94927 1.21035 0.96295 0.94094 0.97696 1.21051 1.03002 0.94564 0.98656 1.20836 0.96886 0.98978 0.92653 0.77865 0.87172 1.18192 1.17924 0.91969 0.91752 0.90818 0.91878 0.91574 0.90869 0.77396 0.90816 0.90890 0.91336 0.90749 0.85338 0.85487 0.85303 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.00 12.88 -35.23 -0.45 -1.45 16 2 C -0.05 -0.07 2.38 36.00 0.09 0.01 16 3 Si 0.68 -0.13 29.92 -169.99 -5.09 -5.21 16 4 C -0.16 -0.22 5.27 -104.47 -0.55 -0.78 16 5 C 0.16 0.33 6.66 -39.22 -0.26 0.07 16 6 O -0.30 -0.73 9.00 -19.43 -0.17 -0.90 16 7 C 0.06 -0.01 4.12 37.16 0.15 0.14 16 8 C -0.09 0.03 2.43 -90.62 -0.22 -0.19 16 9 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 10 C -0.11 0.01 5.10 -26.73 -0.14 -0.13 16 11 C -0.15 0.01 5.55 -26.73 -0.15 -0.13 16 12 C 0.10 0.03 3.47 -26.73 -0.09 -0.07 16 13 H 0.05 -0.02 8.14 -51.93 -0.42 -0.44 16 14 O -0.57 -0.86 13.32 -35.23 -0.47 -1.33 16 15 C -0.11 -0.01 5.57 -26.73 -0.15 -0.16 16 16 C -0.11 0.15 5.21 -26.73 -0.14 0.01 16 17 C -0.21 -0.16 9.04 -39.43 -0.36 -0.52 16 18 C -0.07 0.01 10.04 -39.60 -0.40 -0.39 16 19 C -0.15 0.07 10.04 -39.56 -0.40 -0.33 16 20 C -0.08 0.02 8.66 -39.61 -0.34 -0.33 16 21 H 0.37 -0.82 8.70 45.56 0.40 -0.43 16 22 H 0.11 0.29 7.83 -51.93 -0.41 -0.11 16 23 H -0.26 -0.57 7.11 56.52 0.40 -0.16 16 24 H -0.25 -0.77 7.11 56.52 0.40 -0.37 16 25 H 0.06 -0.06 7.66 -51.93 -0.40 -0.46 16 26 H 0.06 -0.06 7.66 -51.93 -0.40 -0.46 16 27 H 0.07 0.09 7.82 -51.93 -0.41 -0.32 16 28 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 29 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 30 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.38 -0.87 9.08 45.56 0.41 -0.46 16 32 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 35 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 36 H 0.13 -0.10 6.30 -52.49 -0.33 -0.44 16 37 H 0.13 -0.26 8.06 -52.48 -0.42 -0.69 16 38 H 0.13 -0.32 8.06 -52.49 -0.42 -0.74 16 39 H 0.13 -0.36 5.13 -52.49 -0.27 -0.63 16 LS Contribution 312.44 15.07 4.71 4.71 Total: 0.00 -6.52 312.44 -9.67 -16.19 By element: Atomic # 1 Polarization: -3.98 SS G_CDS: -5.25 Total: -9.23 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.95 Total: -2.78 kcal Atomic # 8 Polarization: -2.58 SS G_CDS: -1.10 Total: -3.68 kcal Atomic # 14 Polarization: -0.13 SS G_CDS: -5.09 Total: -5.21 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -6.52 -9.67 -16.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26800_16737254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.502 kcal (2) G-P(sol) polarization free energy of solvation -6.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds