Wall clock time and date at job start Tue Mar 9 2021 15:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86300 * 109.47239 * 2 1 4 4 C 1.50696 * 109.47248 * 120.00293 * 2 1 3 5 5 C 1.38714 * 120.03000 * 75.02023 * 4 2 1 6 6 O 1.35901 * 120.05102 * 0.02562 * 5 4 2 7 7 C 1.42904 * 116.99755 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47073 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47020 * 304.99651 * 8 7 6 10 10 C 1.53003 * 109.47394 * 64.99696 * 8 7 6 11 11 C 1.52999 * 109.47055 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46879 * 300.00007 * 11 10 8 13 13 H 1.08999 * 109.47115 * 300.00098 * 12 11 10 14 14 O 1.42902 * 109.47205 * 180.02562 * 12 11 10 15 15 C 1.53003 * 109.47282 * 60.00133 * 12 11 10 16 16 C 1.52999 * 109.47055 * 299.99760 * 15 12 11 17 17 C 1.38749 * 119.89136 * 179.97438 * 5 4 2 18 18 C 1.38126 * 119.94135 * 359.97438 * 17 5 4 19 19 C 1.38290 * 120.05768 * 0.02562 * 18 17 5 20 20 C 1.38165 * 120.02666 * 254.99608 * 4 2 1 21 21 H 0.96704 * 113.99809 * 300.00126 * 1 2 3 22 22 H 1.09000 * 109.47050 * 240.00604 * 2 1 3 23 23 H 1.48496 * 110.00243 * 178.68181 * 3 2 1 24 24 H 1.48507 * 110.00194 * 300.00682 * 3 2 1 25 25 H 1.09003 * 109.46792 * 299.99749 * 7 6 5 26 26 H 1.08993 * 109.47273 * 59.99547 * 7 6 5 27 27 H 1.09002 * 109.46505 * 300.00184 * 10 8 7 28 28 H 1.08999 * 109.47074 * 59.99988 * 10 8 7 29 29 H 1.08995 * 109.46963 * 180.02562 * 11 10 8 30 30 H 1.08999 * 109.47327 * 59.99975 * 11 10 8 31 31 H 0.96701 * 113.99754 * 59.99148 * 14 12 11 32 32 H 1.09002 * 109.46505 * 179.97438 * 15 12 11 33 33 H 1.08999 * 109.47074 * 59.99940 * 15 12 11 34 34 H 1.08999 * 109.47327 * 300.00025 * 16 15 12 35 35 H 1.08995 * 109.46963 * 179.97438 * 16 15 12 36 36 H 1.07998 * 120.02700 * 180.02562 * 17 5 4 37 37 H 1.08005 * 119.97091 * 180.02562 * 18 17 5 38 38 H 1.07995 * 119.94278 * 180.27458 * 19 18 17 39 39 H 1.07997 * 119.97398 * 0.02562 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.8701 -2.0941 1.3067 6 8 1.3576 -2.8107 0.2719 7 6 1.3253 -4.2317 0.4200 8 6 0.7192 -4.8617 -0.8357 9 1 -0.2599 -4.4223 -1.0262 10 6 1.6372 -4.6001 -2.0315 11 6 1.0307 -5.2295 -3.2872 12 6 0.8806 -6.7380 -3.0799 13 1 1.8595 -7.1778 -2.8895 14 8 0.3147 -7.3260 -4.2529 15 6 -0.0374 -6.9996 -1.8841 16 6 0.5691 -6.3701 -0.6283 17 6 2.3339 -2.7453 2.4407 18 6 2.8558 -2.0147 3.4903 19 6 2.9158 -0.6353 3.4118 20 6 2.4538 0.0158 2.2832 21 1 -0.3933 0.4417 0.7651 22 1 1.7923 -0.5137 -0.8900 23 1 3.5346 1.7703 0.0321 24 1 1.5614 2.4680 -1.2084 25 1 2.3395 -4.6054 0.5612 26 1 0.7179 -4.4930 1.2865 27 1 1.7437 -3.5254 -2.1793 28 1 2.6163 -5.0395 -1.8409 29 1 1.6849 -5.0436 -4.1390 30 1 0.0517 -4.7897 -3.4776 31 1 0.8450 -7.1990 -5.0515 32 1 -0.1446 -8.0743 -1.7368 33 1 -1.0164 -6.5598 -2.0745 34 1 1.5480 -6.8099 -0.4379 35 1 -0.0851 -6.5561 0.2234 36 1 2.2877 -3.8226 2.5022 37 1 3.2174 -2.5212 4.3730 38 1 3.3283 -0.0662 4.2317 39 1 2.5017 1.0931 2.2244 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26800_16737254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:52:48 Heat of formation + Delta-G solvation = -106.882601 kcal Electronic energy + Delta-G solvation = -20518.954230 eV Core-core repulsion = 17392.634501 eV Total energy + Delta-G solvation = -3126.319730 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.140 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43529 -40.15415 -38.62888 -37.48121 -36.69666 -32.77343 -32.02893 -31.88194 -30.62392 -26.81747 -26.64251 -23.88447 -23.48368 -22.60480 -21.91886 -20.90533 -19.26386 -18.26463 -18.01408 -17.15964 -17.05449 -16.66364 -16.27067 -15.92941 -15.54887 -15.47300 -15.00933 -14.93128 -14.78930 -14.28283 -14.19634 -13.71642 -13.45351 -13.28133 -13.22756 -12.98124 -12.61331 -12.33335 -12.20447 -12.15362 -11.95748 -11.83008 -11.61108 -11.55576 -11.14740 -10.77700 -10.37896 -9.95930 -9.17024 -5.03811 0.24472 0.44449 1.30042 1.62922 1.94785 2.16641 2.72010 3.17774 3.55037 3.57961 3.63617 3.69492 3.77574 3.93468 4.00538 4.09598 4.10098 4.19167 4.26281 4.30934 4.36282 4.37453 4.41944 4.46749 4.52937 4.55322 4.69065 4.76151 4.91965 4.98577 4.99959 5.02757 5.08765 5.11937 5.25750 5.32487 5.37590 5.38809 5.53652 5.81760 6.42553 6.79706 6.80585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.066 4.066 3 Si 0.785 3.215 4 C -0.173 4.173 5 C 0.131 3.869 6 O -0.322 6.322 7 C 0.061 3.939 8 C -0.083 4.083 9 H 0.069 0.931 10 C -0.107 4.107 11 C -0.147 4.147 12 C 0.102 3.898 13 H 0.065 0.935 14 O -0.590 6.590 15 C -0.113 4.113 16 C -0.102 4.102 17 C -0.220 4.220 18 C -0.079 4.079 19 C -0.157 4.157 20 C -0.079 4.079 21 H 0.391 0.609 22 H 0.088 0.912 23 H -0.285 1.285 24 H -0.300 1.300 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.393 0.607 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.140 0.860 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.296 0.403 4.988 5.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.175 4.175 3 Si 0.690 3.310 4 C -0.174 4.174 5 C 0.085 3.915 6 O -0.236 6.236 7 C -0.014 4.014 8 C -0.101 4.101 9 H 0.087 0.913 10 C -0.144 4.144 11 C -0.185 4.185 12 C 0.044 3.956 13 H 0.083 0.917 14 O -0.398 6.398 15 C -0.151 4.151 16 C -0.139 4.139 17 C -0.239 4.239 18 C -0.097 4.097 19 C -0.175 4.175 20 C -0.097 4.097 21 H 0.240 0.760 22 H 0.105 0.895 23 H -0.212 1.212 24 H -0.229 1.229 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.243 0.757 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.170 0.830 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.314 0.550 4.251 4.871 hybrid contribution 0.468 -0.681 -0.785 1.140 sum 2.782 -0.132 3.466 4.447 Atomic orbital electron populations 1.86497 1.17572 1.82191 1.50057 1.25083 0.85120 1.10661 0.96630 0.93947 0.77681 0.74511 0.84836 1.19860 1.07103 0.91423 0.98998 1.19079 0.93618 0.91290 0.87499 1.86110 1.77603 1.20454 1.39387 1.22999 1.01610 0.77571 0.99176 1.21164 0.99605 0.95969 0.93407 0.91280 1.21453 0.98795 1.00513 0.93681 1.22223 1.01506 0.96186 0.98606 1.21899 0.96487 0.91589 0.85628 0.91702 1.86481 1.53795 1.79538 1.19989 1.21468 0.98858 1.01557 0.93220 1.21425 1.02596 0.92375 0.97523 1.21532 1.06225 1.01328 0.94784 1.21370 0.95771 0.94534 0.98039 1.21411 1.02291 0.94747 0.99087 1.21124 0.96188 1.00139 0.92204 0.75954 0.89484 1.21172 1.22870 0.90967 0.91003 0.92531 0.90940 0.90807 0.92414 0.75746 0.90827 0.92229 0.90078 0.89837 0.84244 0.83494 0.82958 0.82585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.81 12.88 -148.98 -1.92 -4.73 16 2 C -0.07 -0.27 2.38 71.23 0.17 -0.10 16 3 Si 0.78 -0.04 29.92 68.60 2.05 2.02 16 4 C -0.17 -0.60 5.27 -19.77 -0.10 -0.71 16 5 C 0.13 0.68 6.66 22.51 0.15 0.83 16 6 O -0.32 -2.08 9.00 -92.44 -0.83 -2.92 16 7 C 0.06 0.02 4.12 71.98 0.30 0.32 16 8 C -0.08 -0.03 2.43 -10.79 -0.03 -0.05 16 9 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 10 C -0.11 -0.11 5.10 30.59 0.16 0.05 16 11 C -0.15 -0.14 5.55 30.59 0.17 0.03 16 12 C 0.10 0.10 3.47 30.60 0.11 0.20 16 13 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 14 O -0.59 -2.09 13.32 -148.98 -1.98 -4.07 16 15 C -0.11 -0.09 5.57 30.59 0.17 0.08 16 16 C -0.10 0.27 5.21 30.59 0.16 0.43 16 17 C -0.22 -0.32 9.04 22.37 0.20 -0.11 16 18 C -0.08 0.10 10.04 22.26 0.22 0.33 16 19 C -0.16 0.36 10.04 22.28 0.22 0.59 16 20 C -0.08 0.09 8.66 22.25 0.19 0.29 16 21 H 0.39 -1.48 8.70 -74.05 -0.64 -2.12 16 22 H 0.09 0.70 7.83 -2.39 -0.02 0.68 16 23 H -0.28 -1.27 7.11 99.48 0.71 -0.57 16 24 H -0.30 -2.24 7.11 99.48 0.71 -1.54 16 25 H 0.07 -0.14 7.66 -2.39 -0.02 -0.16 16 26 H 0.07 -0.11 7.66 -2.39 -0.02 -0.13 16 27 H 0.06 0.26 7.82 -2.39 -0.02 0.24 16 28 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.39 -1.67 9.08 -74.06 -0.67 -2.34 16 32 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 35 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.14 -0.27 6.30 -2.91 -0.02 -0.29 16 37 H 0.15 -0.87 8.06 -2.91 -0.02 -0.89 16 38 H 0.15 -1.13 8.06 -2.91 -0.02 -1.15 16 39 H 0.16 -1.08 5.13 -2.91 -0.01 -1.10 16 Total: 0.00 -16.43 312.44 -0.83 -17.26 By element: Atomic # 1 Polarization: -9.49 SS G_CDS: -0.23 Total: -9.73 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 2.09 Total: 2.17 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -4.74 Total: -11.71 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: 2.05 Total: 2.02 kcal Total: -16.43 -0.83 -17.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26800_16737254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.627 kcal (2) G-P(sol) polarization free energy of solvation -16.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds