Wall clock time and date at job start Tue Mar 9 2021 15:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46611 * 2 1 4 4 C 1.52997 * 109.47546 * 240.00376 * 2 1 3 5 5 Si 1.86301 * 109.47225 * 119.99799 * 2 1 3 6 6 C 1.86299 * 109.47174 * 300.00476 * 5 2 1 7 7 C 1.86294 * 109.47091 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.46785 * 60.00330 * 5 2 1 9 9 C 1.42904 * 113.99514 * 179.97438 * 8 5 2 10 10 C 1.53009 * 109.46880 * 180.02562 * 9 8 5 11 11 O 1.42900 * 109.47209 * 64.99705 * 10 9 8 12 12 C 1.42902 * 114.00046 * 180.02562 * 11 10 9 13 13 C 1.52991 * 109.46868 * 180.02562 * 12 11 10 14 14 O 1.42903 * 109.47422 * 65.00292 * 13 12 11 15 15 C 1.35897 * 117.00214 * 179.97438 * 14 13 12 16 16 C 1.38709 * 120.05637 * 359.95484 * 15 14 13 17 17 C 1.38172 * 119.94642 * 179.97438 * 16 15 14 18 18 C 1.38245 * 120.05216 * 0.02562 * 17 16 15 19 19 C 1.38287 * 120.11339 * 0.02562 * 18 17 16 20 20 C 1.38125 * 120.05453 * 359.95334 * 19 18 17 21 21 C 1.50699 * 120.02390 * 180.02562 * 20 19 18 22 22 O 1.42895 * 109.47124 * 105.00291 * 21 20 19 23 23 Si 1.86302 * 109.47415 * 344.99961 * 21 20 19 24 24 H 1.48499 * 109.47007 * 59.99977 * 23 21 20 25 25 H 1.48500 * 109.46966 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46711 * 300.00285 * 23 21 20 27 27 H 1.08995 * 109.47356 * 299.99930 * 1 2 3 28 28 H 1.09003 * 109.47622 * 60.00192 * 1 2 3 29 29 H 1.09005 * 109.46879 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47223 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47857 * 300.00094 * 3 2 1 32 32 H 1.09004 * 109.47213 * 60.00149 * 3 2 1 33 33 H 1.09002 * 109.46533 * 299.99715 * 4 2 1 34 34 H 1.09003 * 109.47123 * 59.99127 * 4 2 1 35 35 H 1.08999 * 109.47239 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.47220 * 179.97438 * 6 5 2 37 37 H 1.09005 * 109.47269 * 299.99667 * 6 5 2 38 38 H 1.08999 * 109.47126 * 59.99619 * 6 5 2 39 39 H 1.09007 * 109.47366 * 299.99975 * 7 5 2 40 40 H 1.08993 * 109.47537 * 60.00018 * 7 5 2 41 41 H 1.09009 * 109.47282 * 180.02562 * 7 5 2 42 42 H 1.08997 * 109.47217 * 60.00600 * 9 8 5 43 43 H 1.08993 * 109.47020 * 299.99689 * 9 8 5 44 44 H 1.09005 * 109.46683 * 304.99973 * 10 9 8 45 45 H 1.08997 * 109.47221 * 185.00096 * 10 9 8 46 46 H 1.08995 * 109.46671 * 60.00139 * 12 11 10 47 47 H 1.09000 * 109.46758 * 299.99953 * 12 11 10 48 48 H 1.08997 * 109.47699 * 305.00031 * 13 12 11 49 49 H 1.09008 * 109.46959 * 184.99831 * 13 12 11 50 50 H 1.08002 * 120.02844 * 0.04164 * 16 15 14 51 51 H 1.08002 * 119.97211 * 180.29545 * 17 16 15 52 52 H 1.07997 * 119.93859 * 179.97438 * 18 17 16 53 53 H 1.07998 * 119.97069 * 179.97438 * 19 18 17 54 54 H 1.09005 * 109.46839 * 225.00112 * 21 20 19 55 55 H 0.96701 * 113.99866 * 299.99284 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5299 0.0000 3.0423 7 6 4.0139 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5211 9 6 2.0296 -3.1816 2.6514 10 6 1.4647 -4.5997 2.5465 11 8 2.0331 -5.2561 1.4115 12 6 1.5691 -6.5942 1.2212 13 6 2.2406 -7.1958 -0.0149 14 8 3.6461 -7.3122 0.2157 15 6 4.3955 -7.8331 -0.7913 16 6 3.7905 -8.2249 -1.9764 17 6 4.5546 -8.7537 -2.9990 18 6 5.9210 -8.8930 -2.8414 19 6 6.5264 -8.5041 -1.6605 20 6 5.7669 -7.9745 -0.6355 21 6 6.4275 -7.5504 0.6510 22 8 6.5045 -6.1244 0.6993 23 14 8.1446 -8.2683 0.7335 24 1 8.9426 -7.7764 -0.4183 25 1 8.7952 -7.8508 2.0014 26 1 8.0645 -9.7503 0.6832 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1298 1.4426 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 1.6768 -1.7488 -1.2492 34 1 1.6766 -0.2073 -2.1392 35 1 3.1301 -0.7215 -1.2490 36 1 1.8929 -0.5140 3.9323 37 1 1.8932 1.0277 3.0423 38 1 0.4399 0.0000 3.0422 39 1 4.3777 -1.3911 0.6315 40 1 4.3769 0.1502 1.5217 41 1 4.3774 -1.3917 2.4113 42 1 1.6654 -2.7118 3.5650 43 1 3.1184 -3.2254 2.6744 44 1 0.3816 -4.5519 2.4339 45 1 1.7118 -5.1570 3.4500 46 1 0.4883 -6.5874 1.0809 47 1 1.8181 -7.1931 2.0972 48 1 2.0659 -6.5488 -0.8745 49 1 1.8218 -8.1827 -0.2118 50 1 2.7231 -8.1157 -2.1003 51 1 4.0847 -9.0545 -3.9237 52 1 6.5164 -9.3069 -3.6417 53 1 7.5939 -8.6143 -1.5397 54 1 5.8417 -7.9115 1.4964 55 1 7.0124 -5.7332 -0.0247 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26800_16896866.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:57:02 Heat of formation + Delta-G solvation = -185.226405 kcal Electronic energy + Delta-G solvation = -30851.350202 eV Core-core repulsion = 26784.357599 eV Total energy + Delta-G solvation = -4066.992602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.202 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.32774 -39.38243 -38.51656 -37.47801 -37.29814 -36.82273 -32.81156 -32.04582 -30.67865 -29.63361 -29.16595 -29.05606 -27.83186 -27.37801 -26.63747 -24.72472 -23.44889 -22.77414 -22.25624 -20.41179 -19.44483 -18.22095 -18.01446 -17.89493 -17.05003 -16.81750 -16.61949 -16.41098 -16.09624 -15.82350 -15.77464 -15.51356 -15.29093 -15.04972 -14.84391 -14.75781 -14.55438 -14.45970 -13.98728 -13.93415 -13.54219 -13.44809 -13.36511 -13.17976 -13.08852 -12.96792 -12.95274 -12.91881 -12.62343 -12.46570 -12.40726 -12.32619 -12.15409 -11.89373 -11.82729 -11.74318 -11.67533 -11.57651 -11.47852 -11.18073 -10.54411 -10.31502 -10.28924 -10.04183 -9.96991 -9.15678 0.23281 0.44272 1.17522 1.42980 1.52794 1.55678 1.81151 1.90081 2.14842 2.21958 2.51169 2.69669 2.72628 3.57041 3.74539 3.87681 3.92958 4.07840 4.12405 4.12786 4.13055 4.16774 4.24017 4.26093 4.36258 4.37198 4.44419 4.47340 4.49899 4.56390 4.59892 4.65909 4.72617 4.75318 4.75631 4.79313 4.80020 4.82124 4.83622 4.84851 4.99914 4.99961 5.09157 5.09580 5.20557 5.32174 5.33711 5.36469 5.40945 5.44710 5.51825 5.53684 5.59971 5.64533 5.79513 6.29020 6.45751 6.74668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.380 4.380 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.310 2.690 6 C -0.513 4.513 7 C -0.519 4.519 8 O -0.636 6.636 9 C 0.076 3.924 10 C 0.054 3.946 11 O -0.398 6.398 12 C 0.060 3.940 13 C 0.055 3.945 14 O -0.315 6.315 15 C 0.137 3.863 16 C -0.219 4.219 17 C -0.078 4.078 18 C -0.160 4.160 19 C -0.097 4.097 20 C -0.171 4.171 21 C -0.074 4.074 22 O -0.551 6.551 23 Si 0.990 3.010 24 H -0.242 1.242 25 H -0.275 1.275 26 H -0.256 1.256 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.098 0.902 50 H 0.143 0.857 51 H 0.148 0.852 52 H 0.147 0.853 53 H 0.141 0.859 54 H 0.104 0.896 55 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 -1.733 0.055 2.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.423 4.423 3 C -0.197 4.197 4 C -0.192 4.192 5 Si 1.440 2.560 6 C -0.615 4.615 7 C -0.619 4.619 8 O -0.595 6.595 9 C 0.001 3.999 10 C -0.022 4.022 11 O -0.318 6.318 12 C -0.016 4.016 13 C -0.020 4.020 14 O -0.228 6.228 15 C 0.091 3.909 16 C -0.238 4.238 17 C -0.096 4.096 18 C -0.178 4.178 19 C -0.115 4.115 20 C -0.172 4.172 21 C -0.183 4.183 22 O -0.357 6.357 23 Si 0.812 3.188 24 H -0.166 1.166 25 H -0.200 1.200 26 H -0.179 1.179 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.116 0.884 50 H 0.161 0.839 51 H 0.166 0.834 52 H 0.165 0.835 53 H 0.158 0.842 54 H 0.122 0.878 55 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.134 -2.199 0.550 2.535 hybrid contribution -0.317 0.557 -0.520 0.825 sum -1.452 -1.642 0.030 2.192 Atomic orbital electron populations 1.21524 0.94012 1.01699 1.01971 1.25868 1.00567 1.02977 1.12866 1.21599 1.01152 0.94610 1.02357 1.21509 1.00734 0.99841 0.97107 0.76307 0.62074 0.53005 0.64574 1.27024 1.07013 1.09764 1.17699 1.27150 1.26143 1.04591 1.04061 1.85379 1.79198 1.46556 1.48390 1.22279 0.99195 0.90733 0.87699 1.22819 0.98335 0.92140 0.88922 1.88016 1.68528 1.26699 1.48536 1.22661 0.98324 0.83480 0.97181 1.23076 0.78543 1.01420 0.98962 1.86178 1.20520 1.77593 1.38502 1.19030 0.90937 0.93059 0.87844 1.21563 1.01674 1.06398 0.94120 1.21342 0.94010 0.95583 0.98666 1.21339 0.95381 1.02816 0.98239 1.21190 1.00143 0.97158 0.93017 1.19830 0.91708 1.06858 0.98758 1.24967 1.10871 0.85661 0.96834 1.86535 1.77801 1.18337 1.53071 0.85179 0.74156 0.79365 0.80055 1.16555 1.20018 1.17943 0.91802 0.93259 0.92705 0.92086 0.93005 0.91548 0.93016 0.93137 0.92612 0.90861 0.90289 0.90783 0.91997 0.90394 0.91474 0.88817 0.92215 0.91529 0.90524 0.88992 0.91804 0.91384 0.88395 0.83925 0.83407 0.83492 0.84162 0.87804 0.76910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.23 7.85 71.98 0.56 0.33 16 2 C -0.38 -0.64 0.53 -10.80 -0.01 -0.64 16 3 C -0.14 -0.04 7.85 71.98 0.56 0.52 16 4 C -0.13 -0.50 7.85 71.98 0.56 0.07 16 5 Si 1.31 0.43 8.45 68.60 0.58 1.01 16 6 C -0.51 0.61 8.50 113.37 0.96 1.58 16 7 C -0.52 -1.25 8.50 113.37 0.96 -0.29 16 8 O -0.64 -2.53 8.52 -144.35 -1.23 -3.76 16 9 C 0.08 0.09 5.51 71.99 0.40 0.48 16 10 C 0.05 0.06 6.32 71.99 0.45 0.52 16 11 O -0.40 -2.68 10.27 -135.05 -1.39 -4.07 16 12 C 0.06 0.04 6.32 71.98 0.45 0.50 16 13 C 0.05 0.09 5.12 71.98 0.37 0.46 16 14 O -0.31 -2.53 9.44 -87.75 -0.83 -3.36 16 15 C 0.14 0.93 6.66 22.51 0.15 1.08 16 16 C -0.22 -0.65 9.04 22.37 0.20 -0.45 16 17 C -0.08 -0.06 10.04 22.26 0.22 0.17 16 18 C -0.16 -0.11 10.04 22.28 0.22 0.11 16 19 C -0.10 -0.23 8.66 22.25 0.19 -0.04 16 20 C -0.17 -0.95 5.27 -19.77 -0.10 -1.06 16 21 C -0.07 -0.36 2.38 71.24 0.17 -0.19 16 22 O -0.55 -3.87 12.88 -148.98 -1.92 -5.79 16 23 Si 0.99 1.34 25.49 68.60 1.75 3.09 16 24 H -0.24 0.14 6.73 99.48 0.67 0.81 16 25 H -0.27 -1.26 7.11 99.48 0.71 -0.56 16 26 H -0.26 -0.52 7.11 99.48 0.71 0.19 16 27 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 28 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.05 0.14 7.97 -2.38 -0.02 0.13 16 30 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 31 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.07 -0.12 7.79 -2.38 -0.02 -0.14 16 33 H 0.05 0.28 7.97 -2.39 -0.02 0.26 16 34 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.05 0.17 7.79 -2.39 -0.02 0.16 16 36 H 0.07 -0.17 7.48 -2.39 -0.02 -0.19 16 37 H 0.08 -0.15 7.79 -2.38 -0.02 -0.17 16 38 H 0.07 -0.09 7.79 -2.39 -0.02 -0.11 16 39 H 0.06 0.30 7.79 -2.38 -0.02 0.28 16 40 H 0.08 0.06 7.79 -2.39 -0.02 0.04 16 41 H 0.07 0.15 7.48 -2.38 -0.02 0.13 16 42 H 0.09 -0.43 7.21 -2.39 -0.02 -0.44 16 43 H 0.06 0.12 7.21 -2.39 -0.02 0.10 16 44 H 0.07 -0.06 8.14 -2.38 -0.02 -0.08 16 45 H 0.08 -0.21 8.14 -2.39 -0.02 -0.22 16 46 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 47 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 48 H 0.07 0.14 7.66 -2.39 -0.02 0.12 16 49 H 0.10 -0.34 7.66 -2.38 -0.02 -0.36 16 50 H 0.14 -0.13 6.30 -2.91 -0.02 -0.15 16 51 H 0.15 -0.62 8.06 -2.91 -0.02 -0.65 16 52 H 0.15 -0.59 8.06 -2.91 -0.02 -0.61 16 53 H 0.14 -0.16 4.89 -2.91 -0.01 -0.17 16 54 H 0.10 0.62 7.83 -2.38 -0.02 0.60 16 55 H 0.38 0.06 8.70 -74.06 -0.64 -0.58 16 Total: 0.00 -15.83 436.22 4.22 -11.61 By element: Atomic # 1 Polarization: -2.79 SS G_CDS: 0.91 Total: -1.88 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.35 Total: 3.16 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -5.36 Total: -16.98 kcal Atomic # 14 Polarization: 1.76 SS G_CDS: 2.33 Total: 4.09 kcal Total: -15.83 4.22 -11.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26800_16896866.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.619 kcal (2) G-P(sol) polarization free energy of solvation -15.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds