Wall clock time and date at job start Tue Mar 9 2021 15:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47050 * 2 1 4 4 C 1.53006 * 109.46956 * 240.00160 * 2 1 3 5 5 Si 1.86293 * 109.47452 * 120.00184 * 2 1 3 6 6 C 1.86298 * 109.47054 * 300.00063 * 5 2 1 7 7 C 1.86301 * 109.47359 * 179.97438 * 5 2 1 8 8 O 1.63108 * 109.47047 * 59.99858 * 5 2 1 9 9 C 1.42903 * 113.99890 * 180.02562 * 8 5 2 10 10 C 1.52995 * 109.46941 * 180.02562 * 9 8 5 11 11 C 1.52991 * 109.47220 * 180.02562 * 10 9 8 12 12 O 1.42903 * 109.47422 * 180.02562 * 11 10 9 13 13 C 1.35897 * 117.00214 * 179.97438 * 12 11 10 14 14 C 1.38709 * 120.05637 * 359.95484 * 13 12 11 15 15 C 1.38172 * 119.94642 * 179.97438 * 14 13 12 16 16 C 1.38245 * 120.05216 * 0.02562 * 15 14 13 17 17 C 1.38287 * 120.11339 * 0.02562 * 16 15 14 18 18 C 1.38125 * 120.05453 * 359.95334 * 17 16 15 19 19 C 1.50699 * 120.02390 * 180.02562 * 18 17 16 20 20 O 1.42895 * 109.47124 * 105.00291 * 19 18 17 21 21 Si 1.86302 * 109.47415 * 344.99961 * 19 18 17 22 22 H 1.48499 * 109.47007 * 59.99977 * 21 19 18 23 23 H 1.48500 * 109.46966 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46711 * 300.00285 * 21 19 18 25 25 H 1.08993 * 109.46613 * 299.99769 * 1 2 3 26 26 H 1.08998 * 109.46999 * 59.99616 * 1 2 3 27 27 H 1.08992 * 109.46821 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47341 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47534 * 300.00057 * 3 2 1 30 30 H 1.08993 * 109.47224 * 60.00605 * 3 2 1 31 31 H 1.08992 * 109.47085 * 300.00385 * 4 2 1 32 32 H 1.09007 * 109.46718 * 59.99842 * 4 2 1 33 33 H 1.09001 * 109.47329 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.46752 * 179.97438 * 6 5 2 35 35 H 1.09002 * 109.46971 * 299.99317 * 6 5 2 36 36 H 1.08998 * 109.47670 * 59.99935 * 6 5 2 37 37 H 1.09001 * 109.47055 * 300.00072 * 7 5 2 38 38 H 1.08992 * 109.47237 * 59.99681 * 7 5 2 39 39 H 1.08998 * 109.46906 * 180.02562 * 7 5 2 40 40 H 1.08995 * 109.46916 * 59.99940 * 9 8 5 41 41 H 1.08995 * 109.47052 * 299.99905 * 9 8 5 42 42 H 1.09000 * 109.47385 * 59.99689 * 10 9 8 43 43 H 1.09008 * 109.46890 * 299.99996 * 10 9 8 44 44 H 1.08997 * 109.47699 * 59.99877 * 11 10 9 45 45 H 1.09008 * 109.46959 * 299.99676 * 11 10 9 46 46 H 1.08002 * 120.02844 * 0.04164 * 14 13 12 47 47 H 1.08002 * 119.97211 * 180.29545 * 15 14 13 48 48 H 1.07997 * 119.93859 * 179.97438 * 16 15 14 49 49 H 1.07998 * 119.97069 * 179.97438 * 17 16 15 50 50 H 1.09005 * 109.46839 * 225.00112 * 19 18 17 51 51 H 0.96701 * 113.99866 * 299.99284 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1511 -0.8782 1.5210 6 6 1.5302 -0.0001 3.0422 7 6 4.0141 -0.8789 1.5206 8 8 1.6074 -2.4160 1.5210 9 6 2.0287 -3.1814 2.6518 10 6 1.4639 -4.5995 2.5468 11 6 1.9144 -5.4188 3.7578 12 8 1.3874 -6.7434 3.6594 13 6 1.6963 -7.6065 4.6627 14 6 2.4910 -7.1874 5.7195 15 6 2.8032 -8.0666 6.7387 16 6 2.3247 -9.3631 6.7054 17 6 1.5331 -9.7837 5.6524 18 6 1.2178 -8.9085 4.6314 19 6 0.3546 -9.3674 3.4845 20 8 -0.9578 -8.8206 3.6276 21 14 0.2560 -11.2278 3.4870 22 1 -0.3359 -11.6903 4.7680 23 1 -0.5941 -11.6799 2.3565 24 1 1.6200 -11.7959 3.3383 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6766 -1.7488 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1300 -0.7209 -1.2496 34 1 1.8932 -0.5143 3.9322 35 1 1.8936 1.0276 3.0422 36 1 0.4402 0.0000 3.0423 37 1 4.3771 -1.3930 0.6306 38 1 4.3778 0.1486 1.5203 39 1 4.3774 -1.3931 2.4103 40 1 1.6639 -2.7113 3.5650 41 1 3.1175 -3.2253 2.6757 42 1 1.8290 -5.0693 1.6336 43 1 0.3750 -4.5560 2.5227 44 1 1.5489 -4.9489 4.6708 45 1 3.0033 -5.4623 3.7823 46 1 2.8645 -6.1743 5.7463 47 1 3.4180 -7.7393 7.5641 48 1 2.5703 -10.0489 7.5027 49 1 1.1609 -10.7972 5.6285 50 1 0.7892 -9.0278 2.5443 51 1 -1.4057 -9.0815 4.4440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26800_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:57:47 Heat of formation + Delta-G solvation = -155.420990 kcal Electronic energy + Delta-G solvation = -25886.797644 eV Core-core repulsion = 22295.317312 eV Total energy + Delta-G solvation = -3591.480332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.187 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.33454 -38.95707 -38.08405 -37.39652 -36.85402 -33.64284 -32.56872 -30.79715 -29.47059 -29.12429 -27.88624 -27.40671 -26.86156 -26.58465 -23.62580 -22.76627 -21.99130 -20.44382 -19.34284 -18.15906 -17.65924 -17.49999 -17.00482 -16.59500 -16.21227 -16.08323 -15.83994 -15.64990 -15.28553 -15.00888 -14.89347 -14.75802 -14.53727 -14.30560 -14.08366 -13.99820 -13.58290 -13.47899 -13.29726 -13.17190 -12.98272 -12.95933 -12.91904 -12.87742 -12.73006 -12.41967 -12.30043 -12.09831 -11.92301 -11.78479 -11.71671 -11.69492 -11.54151 -11.43610 -11.35964 -10.40370 -10.27072 -10.09840 -9.97171 -9.15368 0.23049 0.44583 1.21451 1.33070 1.44870 1.56926 1.70742 1.95933 2.01478 2.15168 2.48022 2.70835 3.57398 3.72142 3.80404 3.84925 3.90424 4.01227 4.07789 4.10148 4.10840 4.18391 4.20828 4.29465 4.35031 4.39846 4.45430 4.56351 4.62553 4.66443 4.68393 4.68854 4.70286 4.79277 4.84182 4.98471 4.98656 5.01096 5.03813 5.09190 5.09271 5.18610 5.31270 5.32228 5.33637 5.39774 5.40960 5.49100 5.50406 5.52010 5.56393 5.75379 6.43539 6.68624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.288 2.712 6 C -0.511 4.511 7 C -0.511 4.511 8 O -0.623 6.623 9 C 0.090 3.910 10 C -0.123 4.123 11 C 0.057 3.943 12 O -0.299 6.299 13 C 0.158 3.842 14 C -0.211 4.211 15 C -0.073 4.073 16 C -0.153 4.153 17 C -0.090 4.090 18 C -0.154 4.154 19 C -0.069 4.069 20 O -0.533 6.533 21 Si 0.949 3.051 22 H -0.253 1.253 23 H -0.253 1.253 24 H -0.250 1.250 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.130 0.870 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.129 0.871 50 H 0.116 0.884 51 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 0.546 2.652 3.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.419 2.581 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.582 6.582 9 C 0.014 3.986 10 C -0.160 4.160 11 C -0.018 4.018 12 O -0.212 6.212 13 C 0.112 3.888 14 C -0.230 4.230 15 C -0.091 4.091 16 C -0.171 4.171 17 C -0.107 4.107 18 C -0.156 4.156 19 C -0.179 4.179 20 O -0.338 6.338 21 Si 0.772 3.228 22 H -0.177 1.177 23 H -0.177 1.177 24 H -0.173 1.173 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.148 0.852 47 H 0.145 0.855 48 H 0.145 0.855 49 H 0.147 0.853 50 H 0.134 0.866 51 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.827 -0.301 1.733 2.536 hybrid contribution 0.437 0.951 0.928 1.399 sum 2.264 0.650 2.661 3.554 Atomic orbital electron populations 1.21514 0.93771 1.02073 1.01799 1.25782 1.00729 1.02616 1.12702 1.21555 1.00755 0.94914 1.02160 1.21516 1.00580 1.00294 0.96760 0.76709 0.62993 0.53371 0.65029 1.27037 1.07080 1.09498 1.17706 1.27036 1.25069 1.04753 1.04457 1.85337 1.79330 1.46062 1.47480 1.21794 0.98037 0.91593 0.87128 1.21506 1.03524 0.93046 0.97952 1.22717 0.98446 0.81170 0.99485 1.86134 1.70474 1.21486 1.43088 1.18726 0.93227 0.89451 0.87406 1.21331 1.03907 1.01391 0.96368 1.21029 0.97513 0.93186 0.97383 1.21029 1.00239 0.96601 0.99274 1.20995 0.97465 0.98917 0.93354 1.19659 1.04257 0.92286 0.99351 1.24819 0.83946 1.10124 0.99043 1.86567 1.26709 1.75409 1.45073 0.85745 0.81684 0.74361 0.81001 1.17675 1.17694 1.17331 0.92704 0.92775 0.92102 0.92530 0.92486 0.92521 0.92110 0.92776 0.92716 0.91522 0.90684 0.90811 0.90829 0.90683 0.91525 0.92426 0.92455 0.89613 0.89470 0.91687 0.91750 0.85216 0.85470 0.85463 0.85346 0.86590 0.78172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.02 7.85 37.16 0.29 0.27 16 2 C -0.37 0.11 0.53 -90.62 -0.05 0.06 16 3 C -0.14 0.09 7.85 37.16 0.29 0.38 16 4 C -0.13 -0.02 7.85 37.16 0.29 0.27 16 5 Si 1.29 -1.52 8.45 -169.99 -1.44 -2.96 16 6 C -0.51 0.47 8.50 101.05 0.86 1.33 16 7 C -0.51 0.49 8.50 101.05 0.86 1.35 16 8 O -0.62 -0.13 8.56 -35.23 -0.30 -0.43 16 9 C 0.09 -0.11 5.12 37.16 0.19 0.08 16 10 C -0.12 0.05 5.95 -26.74 -0.16 -0.11 16 11 C 0.06 -0.04 4.74 37.15 0.18 0.14 16 12 O -0.30 -0.68 9.47 -19.42 -0.18 -0.87 16 13 C 0.16 0.33 6.66 -39.22 -0.26 0.07 16 14 C -0.21 -0.13 9.04 -39.43 -0.36 -0.48 16 15 C -0.07 0.00 10.04 -39.60 -0.40 -0.40 16 16 C -0.15 -0.02 10.04 -39.56 -0.40 -0.41 16 17 C -0.09 -0.06 8.66 -39.61 -0.34 -0.40 16 18 C -0.15 -0.26 5.27 -104.47 -0.55 -0.81 16 19 C -0.07 -0.08 2.38 36.01 0.09 0.01 16 20 O -0.53 -1.01 12.88 -35.23 -0.45 -1.46 16 21 Si 0.95 0.10 25.49 -169.99 -4.33 -4.23 16 22 H -0.25 0.08 6.73 56.52 0.38 0.46 16 23 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 24 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 25 H 0.05 -0.02 7.79 -51.93 -0.40 -0.43 16 26 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 27 H 0.06 0.03 7.97 -51.93 -0.41 -0.38 16 28 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 29 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 30 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 31 H 0.06 0.03 7.96 -51.93 -0.41 -0.39 16 32 H 0.05 0.02 8.14 -51.92 -0.42 -0.40 16 33 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 34 H 0.07 -0.09 7.48 -51.92 -0.39 -0.48 16 35 H 0.07 -0.09 7.79 -51.93 -0.40 -0.49 16 36 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 37 H 0.07 -0.05 7.79 -51.93 -0.40 -0.45 16 38 H 0.07 -0.09 7.79 -51.93 -0.40 -0.49 16 39 H 0.07 -0.09 7.48 -51.93 -0.39 -0.48 16 40 H 0.06 -0.15 7.21 -51.93 -0.37 -0.53 16 41 H 0.06 -0.16 7.21 -51.93 -0.37 -0.53 16 42 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 43 H 0.09 0.04 8.14 -51.92 -0.42 -0.38 16 44 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 45 H 0.06 -0.13 7.66 -51.92 -0.40 -0.53 16 46 H 0.13 -0.18 6.30 -52.49 -0.33 -0.51 16 47 H 0.13 -0.26 8.06 -52.49 -0.42 -0.69 16 48 H 0.13 -0.23 8.06 -52.49 -0.42 -0.65 16 49 H 0.13 -0.11 4.89 -52.49 -0.26 -0.36 16 50 H 0.12 0.15 7.83 -51.93 -0.41 -0.25 16 51 H 0.37 -0.58 8.70 45.56 0.40 -0.18 16 LS Contribution 402.29 15.07 6.06 6.06 Total: 0.00 -5.18 402.29 -8.88 -14.05 By element: Atomic # 1 Polarization: -2.75 SS G_CDS: -8.76 Total: -11.51 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 0.53 Total: 1.35 kcal Atomic # 8 Polarization: -1.83 SS G_CDS: -0.94 Total: -2.76 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: -5.77 Total: -7.19 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -5.18 -8.88 -14.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26800_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.369 kcal (2) G-P(sol) polarization free energy of solvation -5.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds