Wall clock time and date at job start Tue Mar 9 2021 15:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.35894 * 117.00187 * 180.02562 * 10 9 8 12 12 C 1.38710 * 120.05453 * 359.97438 * 11 10 9 13 13 C 1.38169 * 119.94203 * 180.02562 * 12 11 10 14 14 C 1.38252 * 120.05802 * 0.02562 * 13 12 11 15 15 C 1.38282 * 120.10736 * 0.02562 * 14 13 12 16 16 C 1.38133 * 120.05987 * 359.67628 * 15 14 13 17 17 C 1.50690 * 120.03024 * 180.32220 * 16 15 14 18 18 O 1.42906 * 109.47211 * 105.27156 * 17 16 15 19 19 Si 1.86299 * 109.47316 * 345.27559 * 17 16 15 20 20 H 1.48507 * 109.47296 * 179.97438 * 19 17 16 21 21 H 1.48494 * 109.47234 * 299.99693 * 19 17 16 22 22 H 1.48500 * 109.47072 * 60.00153 * 19 17 16 23 23 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 24 24 C 1.38234 * 120.00005 * 0.52168 * 23 8 7 25 25 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 26 26 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 27 27 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 30 30 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 31 31 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 32 32 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 33 33 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 34 34 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 35 35 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 37 37 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 38 38 H 1.08000 * 120.02863 * 359.97438 * 12 11 10 39 39 H 1.08001 * 119.97581 * 179.97438 * 13 12 11 40 40 H 1.07996 * 119.94609 * 180.02562 * 14 13 12 41 41 H 1.08005 * 119.97563 * 179.97438 * 15 14 13 42 42 H 1.09002 * 109.47713 * 225.27244 * 17 16 15 43 43 H 0.96695 * 114.00140 * 179.97438 * 18 17 16 44 44 H 1.07999 * 119.99927 * 180.24100 * 23 8 7 45 45 H 1.08001 * 120.00310 * 179.72165 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9373 -3.5042 6.0749 12 6 5.1777 -4.0867 7.0788 13 6 5.8017 -4.7027 8.1465 14 6 7.1821 -4.7384 8.2152 15 6 7.9416 -4.1575 7.2163 16 6 7.3226 -3.5458 6.1436 17 6 8.1509 -2.9193 5.0517 18 8 8.1193 -3.7533 3.8917 19 14 9.9103 -2.7343 5.6355 20 1 10.7268 -2.1174 4.5593 21 1 9.9434 -1.8676 6.8409 22 1 10.4635 -4.0708 5.9715 23 6 3.1758 -0.8216 3.8171 24 6 2.7155 -0.1698 2.6883 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.5739 1.7565 -0.0005 29 1 2.1206 2.2703 -0.8899 30 1 2.1206 2.2703 0.8901 31 1 2.1206 -1.9058 -1.5212 32 1 2.1206 -0.3643 -2.4112 33 1 3.5740 -0.8778 -1.5214 34 1 2.5356 -2.7987 0.5825 35 1 3.3559 -3.9596 2.5930 36 1 3.5293 -2.3833 5.9053 37 1 3.5332 -3.9242 5.0141 38 1 4.0993 -4.0580 7.0262 39 1 5.2108 -5.1560 8.9286 40 1 7.6680 -5.2207 9.0504 41 1 9.0198 -4.1863 7.2723 42 1 7.7449 -1.9383 4.8050 43 1 8.6322 -3.4109 3.1470 44 1 3.3550 -0.2663 4.7259 45 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26800_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:58:03 Heat of formation + Delta-G solvation = -64.374322 kcal Electronic energy + Delta-G solvation = -23458.968308 eV Core-core repulsion = 20143.826543 eV Total energy + Delta-G solvation = -3315.141765 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.32343 -40.00726 -38.36394 -37.38277 -33.23510 -32.57791 -31.86520 -30.74163 -29.57635 -28.44715 -28.42053 -27.33273 -26.53980 -23.47913 -23.46127 -22.41550 -21.73671 -19.13902 -18.37105 -17.84886 -16.98907 -16.89471 -16.78019 -16.11672 -15.59510 -15.49769 -15.41491 -14.96019 -14.56244 -14.34982 -14.22567 -14.16198 -14.12098 -13.86720 -13.83567 -13.53249 -13.45242 -13.26253 -13.26150 -13.10788 -13.02823 -12.63825 -12.52559 -12.17187 -12.05817 -11.76805 -11.70639 -11.61820 -11.04357 -10.90998 -10.82379 -10.17242 -9.89115 -9.76043 -9.66988 -9.08768 0.19386 0.29694 0.51406 0.56787 1.21053 1.48085 1.53768 1.70322 1.84481 1.89629 1.94322 2.34194 2.54169 2.73882 3.06407 3.54884 3.73402 3.82403 3.86077 4.00955 4.08538 4.16614 4.21805 4.25226 4.34562 4.45888 4.52790 4.56816 4.67734 4.69705 4.70667 4.71291 4.74797 4.75214 4.75998 4.77567 5.02301 5.02460 5.17316 5.34972 5.41548 5.42275 5.46871 5.50183 5.53046 5.57006 5.63329 5.65085 5.80741 6.13059 6.46865 6.73547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.449 4.449 4 C -0.450 4.450 5 C -0.362 4.362 6 C -0.092 4.092 7 C -0.104 4.104 8 C -0.087 4.087 9 C 0.099 3.901 10 O -0.297 6.297 11 C 0.156 3.844 12 C -0.212 4.212 13 C -0.073 4.073 14 C -0.153 4.153 15 C -0.085 4.085 16 C -0.109 4.109 17 C -0.069 4.069 18 O -0.541 6.541 19 Si 0.944 3.056 20 H -0.256 1.256 21 H -0.249 1.249 22 H -0.248 1.248 23 C -0.107 4.107 24 C -0.092 4.092 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.074 0.926 43 H 0.376 0.624 44 H 0.120 0.880 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 1.430 -0.291 1.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.403 4.403 6 C -0.109 4.109 7 C -0.122 4.122 8 C -0.087 4.087 9 C 0.024 3.976 10 O -0.210 6.210 11 C 0.110 3.890 12 C -0.230 4.230 13 C -0.091 4.091 14 C -0.171 4.171 15 C -0.103 4.103 16 C -0.110 4.110 17 C -0.180 4.180 18 O -0.346 6.346 19 Si 0.767 3.233 20 H -0.180 1.180 21 H -0.172 1.172 22 H -0.172 1.172 23 C -0.125 4.125 24 C -0.110 4.110 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.092 0.908 43 H 0.223 0.777 44 H 0.138 0.862 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.754 1.226 0.274 1.465 hybrid contribution -0.270 0.038 -0.120 0.298 sum -1.024 1.264 0.155 1.634 Atomic orbital electron populations 1.26122 1.20442 1.04584 1.04494 0.78191 0.66854 0.66137 0.63744 1.26133 1.06492 1.18540 1.04555 1.26135 1.06506 1.08054 1.15043 1.27466 1.03153 0.99514 1.10171 1.21074 0.97500 0.94656 0.97717 1.21152 0.98557 0.99972 0.92522 1.19449 1.00741 0.94114 0.94378 1.21647 0.79081 1.00354 0.96504 1.86212 1.20503 1.72407 1.41883 1.18740 0.91405 0.92113 0.86720 1.21301 1.00177 1.04980 0.96588 1.21018 0.94706 0.96489 0.96887 1.21009 0.93904 1.02425 0.99802 1.20948 0.99938 0.95964 0.93414 1.18594 0.90641 1.04876 0.96913 1.24547 1.09074 0.95926 0.88429 1.86531 1.75576 1.49008 1.23502 0.85829 0.75401 0.81065 0.80994 1.18015 1.17216 1.17176 1.21137 0.98920 0.93536 0.98908 1.21066 0.97593 0.99708 0.92657 0.91177 0.91020 0.91163 0.91034 0.90949 0.91178 0.91159 0.90955 0.91022 0.85922 0.86123 0.91119 0.91065 0.85209 0.85409 0.85365 0.85377 0.90823 0.77677 0.86194 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.66 8.65 101.05 0.87 1.54 16 2 Si 1.06 -2.52 12.32 -169.99 -2.09 -4.61 16 3 C -0.45 0.76 8.53 101.05 0.86 1.63 16 4 C -0.45 0.73 8.53 101.05 0.86 1.59 16 5 C -0.36 -0.03 4.59 -39.58 -0.18 -0.21 16 6 C -0.09 -0.07 9.29 -39.58 -0.37 -0.44 16 7 C -0.10 -0.17 9.70 -39.58 -0.38 -0.56 16 8 C -0.09 -0.16 5.51 -104.63 -0.58 -0.74 16 9 C 0.10 0.12 4.86 36.00 0.18 0.30 16 10 O -0.30 -1.08 9.45 -19.41 -0.18 -1.26 16 11 C 0.16 0.54 6.66 -39.22 -0.26 0.28 16 12 C -0.21 -0.39 9.04 -39.43 -0.36 -0.74 16 13 C -0.07 -0.08 10.04 -39.60 -0.40 -0.48 16 14 C -0.15 -0.20 10.04 -39.56 -0.40 -0.60 16 15 C -0.08 -0.20 8.66 -39.60 -0.34 -0.54 16 16 C -0.11 -0.37 5.31 -104.47 -0.55 -0.93 16 17 C -0.07 -0.14 2.37 36.00 0.09 -0.05 16 18 O -0.54 -1.39 12.86 -35.23 -0.45 -1.84 16 19 Si 0.94 0.62 25.48 -169.99 -4.33 -3.71 16 20 H -0.26 -0.17 7.11 56.52 0.40 0.23 16 21 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 22 H -0.25 -0.35 6.74 56.52 0.38 0.03 16 23 C -0.11 -0.14 9.70 -39.58 -0.38 -0.53 16 24 C -0.09 -0.05 9.29 -39.58 -0.37 -0.42 16 25 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 31 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 34 H 0.12 -0.14 7.43 -52.49 -0.39 -0.53 16 35 H 0.12 0.08 8.06 -52.49 -0.42 -0.34 16 36 H 0.07 -0.02 7.61 -51.93 -0.40 -0.41 16 37 H 0.07 0.02 7.61 -51.93 -0.39 -0.38 16 38 H 0.13 -0.02 6.30 -52.49 -0.33 -0.35 16 39 H 0.13 -0.15 8.06 -52.49 -0.42 -0.58 16 40 H 0.13 -0.10 8.06 -52.49 -0.42 -0.53 16 41 H 0.13 0.12 4.89 -52.48 -0.26 -0.14 16 42 H 0.07 0.11 7.83 -51.93 -0.41 -0.30 16 43 H 0.38 -0.69 8.74 45.56 0.40 -0.29 16 44 H 0.12 0.00 8.06 -52.49 -0.42 -0.42 16 45 H 0.12 -0.17 7.43 -52.49 -0.39 -0.56 16 LS Contribution 373.02 15.07 5.62 5.62 Total: 0.00 -6.32 373.02 -9.52 -15.84 By element: Atomic # 1 Polarization: -2.78 SS G_CDS: -6.37 Total: -9.14 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.71 Total: -0.89 kcal Atomic # 8 Polarization: -2.47 SS G_CDS: -0.64 Total: -3.11 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: -6.43 Total: -8.32 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -6.32 -9.52 -15.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26800_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.530 kcal (2) G-P(sol) polarization free energy of solvation -6.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds