Wall clock time and date at job start Tue Mar 9 2021 15:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.35894 * 117.00187 * 180.02562 * 10 9 8 12 12 C 1.38710 * 120.05453 * 359.97438 * 11 10 9 13 13 C 1.38169 * 119.94203 * 180.02562 * 12 11 10 14 14 C 1.38252 * 120.05802 * 0.02562 * 13 12 11 15 15 C 1.38282 * 120.10736 * 0.02562 * 14 13 12 16 16 C 1.38133 * 120.05987 * 359.67628 * 15 14 13 17 17 C 1.50690 * 120.03024 * 180.32220 * 16 15 14 18 18 O 1.42906 * 109.47211 * 105.27156 * 17 16 15 19 19 Si 1.86299 * 109.47316 * 345.27559 * 17 16 15 20 20 H 1.48507 * 109.47296 * 179.97438 * 19 17 16 21 21 H 1.48494 * 109.47234 * 299.99693 * 19 17 16 22 22 H 1.48500 * 109.47072 * 60.00153 * 19 17 16 23 23 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 24 24 C 1.38234 * 120.00005 * 0.52168 * 23 8 7 25 25 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 26 26 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 27 27 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 30 30 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 31 31 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 32 32 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 33 33 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 34 34 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 35 35 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 37 37 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 38 38 H 1.08000 * 120.02863 * 359.97438 * 12 11 10 39 39 H 1.08001 * 119.97581 * 179.97438 * 13 12 11 40 40 H 1.07996 * 119.94609 * 180.02562 * 14 13 12 41 41 H 1.08005 * 119.97563 * 179.97438 * 15 14 13 42 42 H 1.09002 * 109.47713 * 225.27244 * 17 16 15 43 43 H 0.96695 * 114.00140 * 179.97438 * 18 17 16 44 44 H 1.07999 * 119.99927 * 180.24100 * 23 8 7 45 45 H 1.08001 * 120.00310 * 179.72165 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9373 -3.5042 6.0749 12 6 5.1777 -4.0867 7.0788 13 6 5.8017 -4.7027 8.1465 14 6 7.1821 -4.7384 8.2152 15 6 7.9416 -4.1575 7.2163 16 6 7.3226 -3.5458 6.1436 17 6 8.1509 -2.9193 5.0517 18 8 8.1193 -3.7533 3.8917 19 14 9.9103 -2.7343 5.6355 20 1 10.7268 -2.1174 4.5593 21 1 9.9434 -1.8676 6.8409 22 1 10.4635 -4.0708 5.9715 23 6 3.1758 -0.8216 3.8171 24 6 2.7155 -0.1698 2.6883 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.5739 1.7565 -0.0005 29 1 2.1206 2.2703 -0.8899 30 1 2.1206 2.2703 0.8901 31 1 2.1206 -1.9058 -1.5212 32 1 2.1206 -0.3643 -2.4112 33 1 3.5740 -0.8778 -1.5214 34 1 2.5356 -2.7987 0.5825 35 1 3.3559 -3.9596 2.5930 36 1 3.5293 -2.3833 5.9053 37 1 3.5332 -3.9242 5.0141 38 1 4.0993 -4.0580 7.0262 39 1 5.2108 -5.1560 8.9286 40 1 7.6680 -5.2207 9.0504 41 1 9.0198 -4.1863 7.2723 42 1 7.7449 -1.9383 4.8050 43 1 8.6322 -3.4109 3.1470 44 1 3.3550 -0.2663 4.7259 45 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26800_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:58:03 Heat of formation + Delta-G solvation = -55.278114 kcal Electronic energy + Delta-G solvation = -23458.573867 eV Core-core repulsion = 20143.826543 eV Total energy + Delta-G solvation = -3314.747323 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43069 -40.04421 -38.47317 -37.50824 -33.29326 -32.66230 -31.89162 -30.83722 -29.43535 -28.29539 -28.27146 -27.38851 -26.64662 -23.56876 -23.49285 -22.51200 -21.79779 -19.24708 -18.50586 -17.90567 -17.07595 -16.97794 -16.84794 -16.15968 -15.65822 -15.57853 -15.49448 -15.04593 -14.59710 -14.34915 -14.28068 -14.06234 -14.04276 -13.80313 -13.75318 -13.59630 -13.44739 -13.14117 -13.11479 -13.08339 -12.96837 -12.68603 -12.55220 -12.23683 -12.12100 -11.80940 -11.77873 -11.71175 -10.92486 -10.78258 -10.75934 -10.28129 -10.00206 -9.81629 -9.69507 -9.21773 0.15359 0.18695 0.39156 0.51210 1.13155 1.42970 1.48018 1.83222 1.85667 2.00128 2.02445 2.31743 2.63895 2.66564 3.01731 3.49605 3.67490 3.78387 3.80112 3.94776 4.04828 4.12845 4.18293 4.22507 4.27127 4.38928 4.48793 4.52184 4.63434 4.70351 4.84676 4.84768 4.88622 4.89337 4.89806 4.90753 4.94480 4.99173 5.14988 5.26243 5.33773 5.39774 5.47437 5.55979 5.59153 5.59497 5.67863 5.70571 5.74113 6.11360 6.35897 6.79412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.126 2.874 3 C -0.462 4.462 4 C -0.463 4.463 5 C -0.373 4.373 6 C -0.103 4.103 7 C -0.122 4.122 8 C -0.102 4.102 9 C 0.098 3.902 10 O -0.315 6.315 11 C 0.134 3.866 12 C -0.217 4.217 13 C -0.077 4.077 14 C -0.158 4.158 15 C -0.098 4.098 16 C -0.134 4.134 17 C -0.078 4.078 18 O -0.561 6.561 19 Si 0.986 3.014 20 H -0.255 1.255 21 H -0.256 1.256 22 H -0.259 1.259 23 C -0.121 4.121 24 C -0.103 4.103 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.139 0.861 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.137 0.863 42 H 0.071 0.929 43 H 0.392 0.608 44 H 0.128 0.872 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 1.666 -0.211 2.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.313 2.687 3 C -0.569 4.569 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.120 4.120 7 C -0.140 4.140 8 C -0.102 4.102 9 C 0.024 3.976 10 O -0.228 6.228 11 C 0.088 3.912 12 C -0.236 4.236 13 C -0.095 4.095 14 C -0.176 4.176 15 C -0.116 4.116 16 C -0.135 4.135 17 C -0.187 4.187 18 O -0.370 6.370 19 Si 0.809 3.191 20 H -0.179 1.179 21 H -0.180 1.180 22 H -0.183 1.183 23 C -0.139 4.139 24 C -0.120 4.120 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.156 0.844 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.163 0.837 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.155 0.845 42 H 0.089 0.911 43 H 0.241 0.759 44 H 0.145 0.855 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.988 1.459 0.352 1.797 hybrid contribution -0.232 -0.047 -0.151 0.281 sum -1.220 1.411 0.201 1.876 Atomic orbital electron populations 1.26268 1.21399 1.04488 1.04641 0.77190 0.65307 0.64661 0.61521 1.26267 1.06375 1.19297 1.04935 1.26286 1.06367 1.08490 1.15850 1.28087 1.02414 0.99497 1.11245 1.21374 0.97344 0.95280 0.98050 1.21346 0.99246 1.00327 0.93070 1.19616 1.01283 0.94586 0.94754 1.21739 0.78203 1.00806 0.96853 1.86174 1.21601 1.72721 1.42351 1.19005 0.91848 0.92997 0.87303 1.21559 1.01012 1.04612 0.96405 1.21364 0.94977 0.96004 0.97126 1.21355 0.94237 1.01921 1.00065 1.21176 1.00631 0.96232 0.93575 1.18939 0.91138 1.05615 0.97785 1.24750 1.10322 0.95509 0.88134 1.86479 1.76321 1.49739 1.24426 0.85221 0.73601 0.79989 0.80289 1.17873 1.17981 1.18299 1.21366 0.99254 0.93593 0.99728 1.21396 0.97285 1.00771 0.92575 0.91325 0.90593 0.91404 0.91370 0.90572 0.90845 0.90968 0.90571 0.91402 0.84354 0.85975 0.89990 0.90551 0.83740 0.82989 0.83211 0.84508 0.91105 0.75856 0.85450 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.60 8.65 113.37 0.98 2.58 16 2 Si 1.13 -5.90 12.32 68.60 0.85 -5.05 16 3 C -0.46 1.85 8.53 113.37 0.97 2.82 16 4 C -0.46 1.69 8.53 113.37 0.97 2.66 16 5 C -0.37 -0.13 4.59 22.27 0.10 -0.02 16 6 C -0.10 -0.22 9.29 22.27 0.21 -0.01 16 7 C -0.12 -0.57 9.70 22.27 0.22 -0.35 16 8 C -0.10 -0.52 5.51 -19.87 -0.11 -0.63 16 9 C 0.10 0.38 4.86 71.23 0.35 0.72 16 10 O -0.31 -2.84 9.45 -92.35 -0.87 -3.71 16 11 C 0.13 1.12 6.66 22.51 0.15 1.27 16 12 C -0.22 -0.90 9.04 22.37 0.20 -0.70 16 13 C -0.08 -0.14 10.04 22.26 0.22 0.09 16 14 C -0.16 -0.38 10.04 22.28 0.22 -0.16 16 15 C -0.10 -0.52 8.66 22.26 0.19 -0.33 16 16 C -0.13 -1.09 5.31 -19.77 -0.10 -1.19 16 17 C -0.08 -0.42 2.37 71.23 0.17 -0.25 16 18 O -0.56 -3.67 12.86 -148.98 -1.92 -5.59 16 19 Si 0.99 1.70 25.48 68.60 1.75 3.45 16 20 H -0.25 -0.29 7.11 99.48 0.71 0.42 16 21 H -0.26 -0.66 7.11 99.48 0.71 0.05 16 22 H -0.26 -0.82 6.74 99.48 0.67 -0.15 16 23 C -0.12 -0.45 9.70 22.27 0.22 -0.23 16 24 C -0.10 -0.15 9.29 22.27 0.21 0.06 16 25 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 26 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 27 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 28 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 29 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 30 H 0.07 -0.33 7.69 -2.38 -0.02 -0.35 16 31 H 0.07 -0.28 7.69 -2.39 -0.02 -0.30 16 32 H 0.08 -0.32 7.96 -2.38 -0.02 -0.34 16 33 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 34 H 0.14 -0.29 7.43 -2.91 -0.02 -0.31 16 35 H 0.12 0.38 8.06 -2.91 -0.02 0.36 16 36 H 0.08 0.05 7.61 -2.39 -0.02 0.03 16 37 H 0.08 0.14 7.61 -2.39 -0.02 0.13 16 38 H 0.14 0.00 6.30 -2.91 -0.02 -0.02 16 39 H 0.15 -0.57 8.06 -2.91 -0.02 -0.59 16 40 H 0.15 -0.40 8.06 -2.91 -0.02 -0.43 16 41 H 0.14 0.32 4.89 -2.91 -0.01 0.31 16 42 H 0.07 0.34 7.83 -2.39 -0.02 0.32 16 43 H 0.39 -0.99 8.74 -74.06 -0.65 -1.64 16 44 H 0.13 0.14 8.06 -2.91 -0.02 0.11 16 45 H 0.14 -0.44 7.43 -2.91 -0.02 -0.46 16 Total: 0.00 -15.00 373.02 6.00 -8.99 By element: Atomic # 1 Polarization: -5.45 SS G_CDS: 1.04 Total: -4.41 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.16 Total: 6.32 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -2.79 Total: -9.30 kcal Atomic # 14 Polarization: -4.20 SS G_CDS: 2.59 Total: -1.60 kcal Total: -15.00 6.00 -8.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26800_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.286 kcal (2) G-P(sol) polarization free energy of solvation -14.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds