Wall clock time and date at job start Tue Mar 9 2021 15:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47271 * 2 1 4 4 C 1.53000 * 109.46725 * 239.99844 * 2 1 3 5 5 Si 1.86304 * 109.47036 * 120.00145 * 2 1 3 6 6 C 1.86296 * 109.46815 * 299.99709 * 5 2 1 7 7 C 1.86300 * 109.46925 * 179.97438 * 5 2 1 8 8 O 1.63097 * 109.47305 * 59.99528 * 5 2 1 9 9 C 1.42895 * 113.99743 * 179.97438 * 8 5 2 10 10 C 1.53003 * 109.47235 * 180.02562 * 9 8 5 11 11 O 1.42902 * 109.46749 * 64.99975 * 10 9 8 12 12 C 1.35884 * 117.00127 * 180.02562 * 11 10 9 13 13 C 1.39816 * 119.56444 * 359.72875 * 12 11 10 14 14 C 1.36019 * 120.92606 * 179.75096 * 13 12 11 15 15 C 1.40552 * 119.73488 * 0.52045 * 14 13 12 16 16 C 1.40528 * 121.21893 * 179.76568 * 15 14 13 17 17 C 1.36102 * 119.66648 * 179.97438 * 16 15 14 18 18 C 1.39378 * 121.00229 * 359.97438 * 17 16 15 19 19 C 1.36089 * 120.98229 * 0.02562 * 18 17 16 20 20 C 1.40585 * 119.65840 * 359.97438 * 19 18 17 21 21 C 1.36608 * 119.56949 * 180.02562 * 12 11 10 22 22 C 1.50700 * 120.18816 * 359.95643 * 21 12 11 23 23 O 1.42904 * 109.46747 * 53.34606 * 22 21 12 24 24 Si 1.86297 * 109.47114 * 293.34516 * 22 21 12 25 25 H 1.48499 * 109.47038 * 65.41478 * 24 22 21 26 26 H 1.48500 * 109.47192 * 185.41467 * 24 22 21 27 27 H 1.48501 * 109.47165 * 305.41116 * 24 22 21 28 28 H 1.08999 * 109.47154 * 300.00245 * 1 2 3 29 29 H 1.09004 * 109.47404 * 59.99869 * 1 2 3 30 30 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47155 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47297 * 299.99904 * 3 2 1 33 33 H 1.08996 * 109.47572 * 60.00165 * 3 2 1 34 34 H 1.09004 * 109.47171 * 299.99629 * 4 2 1 35 35 H 1.08993 * 109.47631 * 60.00200 * 4 2 1 36 36 H 1.09008 * 109.46732 * 180.02562 * 4 2 1 37 37 H 1.09004 * 109.47110 * 180.02562 * 6 5 2 38 38 H 1.09004 * 109.47082 * 299.99719 * 6 5 2 39 39 H 1.08996 * 109.47297 * 60.00203 * 6 5 2 40 40 H 1.08999 * 109.47285 * 299.99623 * 7 5 2 41 41 H 1.09000 * 109.47180 * 59.99982 * 7 5 2 42 42 H 1.09004 * 109.47293 * 179.97438 * 7 5 2 43 43 H 1.08999 * 109.47176 * 60.00964 * 9 8 5 44 44 H 1.08994 * 109.47854 * 299.99929 * 9 8 5 45 45 H 1.08996 * 109.47620 * 185.00476 * 10 9 8 46 46 H 1.08999 * 109.46931 * 305.01069 * 10 9 8 47 47 H 1.07997 * 119.53385 * 0.02562 * 13 12 11 48 48 H 1.08010 * 120.13033 * 180.25820 * 14 13 12 49 49 H 1.08000 * 120.17127 * 359.97438 * 16 15 14 50 50 H 1.08005 * 119.50231 * 179.97438 * 17 16 15 51 51 H 1.08003 * 119.50863 * 180.02562 * 18 17 16 52 52 H 1.08000 * 120.16996 * 180.02562 * 19 18 17 53 53 H 1.08998 * 109.47095 * 173.34092 * 22 21 12 54 54 H 0.96693 * 114.00014 * 65.30296 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 14 2.1510 -0.8783 1.5212 6 6 1.5300 0.0000 3.0422 7 6 4.0140 -0.8790 1.5207 8 8 1.6072 -2.4159 1.5212 9 6 2.0294 -3.1816 2.6515 10 6 1.4644 -4.5996 2.5467 11 8 2.0328 -5.2561 1.4117 12 6 1.6334 -6.5329 1.1734 13 6 0.7100 -7.1383 2.0310 14 6 0.2874 -8.4131 1.8157 15 6 0.7915 -9.1395 0.7232 16 6 0.3802 -10.4600 0.4743 17 6 0.8885 -11.1340 -0.5933 18 6 1.8128 -10.5344 -1.4470 19 6 2.2343 -9.2575 -1.2376 20 6 1.7316 -8.5293 -0.1451 21 6 2.1440 -7.2102 0.1026 22 6 3.1430 -6.5447 -0.8087 23 8 4.2288 -6.0336 -0.0328 24 14 2.3169 -5.1448 -1.7189 25 1 1.9189 -4.0915 -0.7507 26 1 3.2625 -4.5733 -2.7112 27 1 1.1110 -5.6536 -2.4204 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2492 35 1 1.6766 -0.2076 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.8937 -0.5136 3.9322 38 1 1.8934 1.0277 3.0422 39 1 0.4400 0.0000 3.0422 40 1 4.3770 -1.3931 0.6308 41 1 4.3777 0.1486 1.5205 42 1 4.3774 -1.3924 2.4109 43 1 1.6652 -2.7118 3.5651 44 1 3.1182 -3.2256 2.6745 45 1 1.7115 -5.1569 3.4503 46 1 0.3814 -4.5518 2.4340 47 1 0.3235 -6.5844 2.8738 48 1 -0.4296 -8.8668 2.4841 49 1 -0.3356 -10.9376 1.1268 50 1 0.5708 -12.1489 -0.7819 51 1 2.2002 -11.0914 -2.2873 52 1 2.9507 -8.8056 -1.9076 53 1 3.5206 -7.2724 -1.5269 54 1 4.7554 -6.7165 0.4045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26801_10264010.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:58:24 Heat of formation + Delta-G solvation = -118.135500 kcal Electronic energy + Delta-G solvation = -31758.965248 eV Core-core repulsion = 27784.423315 eV Total energy + Delta-G solvation = -3974.541933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 362.187 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.83963 -39.94193 -38.07096 -37.53603 -36.85578 -36.29704 -33.92434 -31.25531 -30.86323 -29.69251 -29.25893 -29.07909 -27.85599 -27.40672 -26.70904 -24.78707 -24.03288 -22.99139 -21.73192 -20.44505 -19.37157 -18.60672 -18.31999 -18.02346 -17.23176 -16.82860 -16.48884 -16.09870 -16.00851 -15.68105 -15.51888 -15.43134 -14.93837 -14.87864 -14.81692 -14.72421 -14.43913 -14.26354 -14.00196 -13.92517 -13.85181 -13.53025 -13.38553 -13.18196 -13.12237 -12.99304 -12.93403 -12.75138 -12.50999 -12.42365 -12.31436 -12.21749 -12.03142 -11.99830 -11.82398 -11.66029 -11.55257 -11.41984 -11.34777 -11.23572 -10.82795 -10.51457 -10.30064 -10.06643 -9.34241 -8.56998 -0.46218 0.08386 1.00127 1.25541 1.46244 1.51725 1.56367 1.76735 2.00762 2.12956 2.15200 2.31524 2.48887 3.12374 3.53875 3.72469 3.86326 3.95694 3.99599 4.04982 4.08955 4.09744 4.16743 4.21676 4.28077 4.33948 4.37703 4.40193 4.42850 4.45131 4.51480 4.65120 4.73819 4.75433 4.77859 4.78655 4.80115 4.80814 4.82056 4.93029 4.96392 5.06131 5.06512 5.08594 5.17397 5.22524 5.25086 5.31011 5.31216 5.37460 5.42502 5.50454 5.58960 5.60431 5.62261 5.64211 5.76699 6.04748 6.48875 6.78334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.384 4.384 3 C -0.139 4.139 4 C -0.141 4.141 5 Si 1.301 2.699 6 C -0.508 4.508 7 C -0.517 4.517 8 O -0.638 6.638 9 C 0.076 3.924 10 C 0.041 3.959 11 O -0.299 6.299 12 C 0.144 3.856 13 C -0.201 4.201 14 C -0.059 4.059 15 C -0.108 4.108 16 C -0.096 4.096 17 C -0.141 4.141 18 C -0.104 4.104 19 C -0.143 4.143 20 C -0.018 4.018 21 C -0.185 4.185 22 C -0.060 4.060 23 O -0.541 6.541 24 Si 0.983 3.017 25 H -0.226 1.226 26 H -0.266 1.266 27 H -0.267 1.267 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.076 0.924 47 H 0.155 0.845 48 H 0.157 0.843 49 H 0.147 0.853 50 H 0.142 0.858 51 H 0.143 0.857 52 H 0.140 0.860 53 H 0.086 0.914 54 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 -1.971 4.125 4.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.426 4.426 3 C -0.196 4.196 4 C -0.198 4.198 5 Si 1.432 2.568 6 C -0.611 4.611 7 C -0.618 4.618 8 O -0.598 6.598 9 C 0.001 3.999 10 C -0.033 4.033 11 O -0.212 6.212 12 C 0.098 3.902 13 C -0.220 4.220 14 C -0.077 4.077 15 C -0.108 4.108 16 C -0.114 4.114 17 C -0.159 4.159 18 C -0.122 4.122 19 C -0.161 4.161 20 C -0.018 4.018 21 C -0.187 4.187 22 C -0.169 4.169 23 O -0.346 6.346 24 Si 0.805 3.195 25 H -0.149 1.149 26 H -0.191 1.191 27 H -0.192 1.192 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.122 0.878 44 H 0.088 0.912 45 H 0.117 0.883 46 H 0.095 0.905 47 H 0.172 0.828 48 H 0.175 0.825 49 H 0.165 0.835 50 H 0.160 0.840 51 H 0.161 0.839 52 H 0.158 0.842 53 H 0.104 0.896 54 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -1.593 -0.768 3.227 3.680 hybrid contribution 0.540 -0.600 0.355 0.882 sum -1.053 -1.368 3.582 3.976 Atomic orbital electron populations 1.21527 0.94059 1.01571 1.02077 1.25921 1.00584 1.03180 1.12914 1.21584 1.01181 0.94409 1.02393 1.21595 1.00974 0.99765 0.97504 0.76457 0.62544 0.53084 0.64714 1.26965 1.06974 1.09731 1.17434 1.27102 1.25606 1.04772 1.04314 1.85421 1.79299 1.46616 1.48444 1.22345 0.99829 0.89685 0.88043 1.23320 0.99270 0.92490 0.88257 1.86337 1.64536 1.22919 1.47391 1.18665 0.93050 0.84472 0.94029 1.21340 1.00925 0.97572 1.02114 1.21267 0.97484 0.93445 0.95501 1.18349 0.99414 0.95841 0.97220 1.21322 0.99330 0.92759 0.98011 1.21174 0.97968 1.01312 0.95435 1.21223 0.96459 0.94892 0.99578 1.21263 1.01723 0.95449 0.97644 1.17824 0.96085 0.92306 0.95606 1.19370 1.05239 0.94559 0.99490 1.24748 0.89831 1.05947 0.96396 1.86713 1.42770 1.37169 1.67997 0.84828 0.77898 0.78561 0.78246 1.14885 1.19094 1.19188 0.91561 0.93293 0.92956 0.91998 0.93081 0.91402 0.93415 0.92940 0.92345 0.90481 0.90278 0.90812 0.91990 0.90345 0.90907 0.87761 0.91172 0.88348 0.90530 0.82752 0.82528 0.83507 0.84005 0.83943 0.84241 0.89618 0.77674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.30 7.85 71.98 0.56 0.26 16 2 C -0.38 -0.80 0.53 -10.80 -0.01 -0.81 16 3 C -0.14 -0.03 7.85 71.98 0.56 0.53 16 4 C -0.14 -0.69 7.85 71.98 0.56 -0.12 16 5 Si 1.30 -0.31 8.45 68.60 0.58 0.27 16 6 C -0.51 1.29 8.50 113.37 0.96 2.25 16 7 C -0.52 -0.53 8.50 113.37 0.96 0.43 16 8 O -0.64 -2.04 8.52 -144.34 -1.23 -3.27 16 9 C 0.08 -0.12 5.50 71.98 0.40 0.28 16 10 C 0.04 -0.04 5.11 71.98 0.37 0.33 16 11 O -0.30 -1.78 6.90 -71.76 -0.50 -2.27 16 12 C 0.14 0.83 6.09 22.27 0.14 0.97 16 13 C -0.20 -0.31 8.93 22.14 0.20 -0.11 16 14 C -0.06 -0.06 9.76 22.32 0.22 0.16 16 15 C -0.11 -0.46 5.74 -21.28 -0.12 -0.58 16 16 C -0.10 -0.11 9.77 22.33 0.22 0.11 16 17 C -0.14 -0.07 9.95 22.05 0.22 0.15 16 18 C -0.10 -0.12 9.95 22.04 0.22 0.10 16 19 C -0.14 -0.49 9.36 22.34 0.21 -0.29 16 20 C -0.02 -0.11 5.74 -21.30 -0.12 -0.23 16 21 C -0.19 -1.23 4.47 -19.72 -0.09 -1.32 16 22 C -0.06 -0.34 2.53 71.24 0.18 -0.16 16 23 O -0.54 -3.04 11.68 -134.44 -1.57 -4.61 16 24 Si 0.98 8.80 27.04 68.60 1.86 10.66 16 25 H -0.23 -2.65 6.55 99.48 0.65 -1.99 16 26 H -0.27 -2.60 7.11 99.48 0.71 -1.90 16 27 H -0.27 -2.69 7.11 99.48 0.71 -1.99 16 28 H 0.07 -0.02 7.79 -2.39 -0.02 -0.04 16 29 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.05 0.19 7.97 -2.39 -0.02 0.17 16 31 H 0.06 -0.06 7.79 -2.38 -0.02 -0.08 16 32 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.07 -0.14 7.79 -2.39 -0.02 -0.16 16 34 H 0.05 0.34 7.97 -2.39 -0.02 0.32 16 35 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.06 0.22 7.79 -2.38 -0.02 0.21 16 37 H 0.08 -0.34 7.48 -2.39 -0.02 -0.36 16 38 H 0.08 -0.24 7.79 -2.38 -0.02 -0.26 16 39 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 40 H 0.06 0.23 7.79 -2.39 -0.02 0.21 16 41 H 0.08 -0.03 7.79 -2.39 -0.02 -0.05 16 42 H 0.07 -0.03 7.48 -2.39 -0.02 -0.04 16 43 H 0.10 -0.83 7.21 -2.39 -0.02 -0.84 16 44 H 0.07 -0.15 7.21 -2.39 -0.02 -0.17 16 45 H 0.10 -0.62 7.62 -2.39 -0.02 -0.64 16 46 H 0.08 -0.16 7.64 -2.39 -0.02 -0.18 16 47 H 0.15 -0.62 6.21 -2.91 -0.02 -0.64 16 48 H 0.16 -0.77 8.06 -2.91 -0.02 -0.79 16 49 H 0.15 -0.57 8.06 -2.91 -0.02 -0.59 16 50 H 0.14 -0.56 8.06 -2.91 -0.02 -0.58 16 51 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 52 H 0.14 0.01 5.97 -2.91 -0.02 -0.01 16 53 H 0.09 0.14 5.43 -2.39 -0.01 0.13 16 54 H 0.37 -0.23 9.11 -74.06 -0.67 -0.91 16 Total: 0.00 -14.45 423.62 5.68 -8.77 By element: Atomic # 1 Polarization: -12.38 SS G_CDS: 0.90 Total: -11.48 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 5.64 Total: 1.94 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -3.30 Total: -10.15 kcal Atomic # 14 Polarization: 8.49 SS G_CDS: 2.44 Total: 10.92 kcal Total: -14.45 5.68 -8.77 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26801_10264010.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.370 kcal (2) G-P(sol) polarization free energy of solvation -14.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds