Wall clock time and date at job start Tue Mar 9 2021 15:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.47017 * 2 1 4 4 C 1.50697 * 109.47213 * 239.99616 * 2 1 3 5 5 C 1.36566 * 120.18887 * 242.55818 * 4 2 1 6 6 O 1.35892 * 119.56500 * 359.97438 * 5 4 2 7 7 C 1.42895 * 116.99864 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46972 * 179.97438 * 7 6 5 9 9 H 1.09003 * 112.84979 * 43.79825 * 8 7 6 10 10 C 1.53780 * 113.61677 * 175.00100 * 8 7 6 11 11 C 1.53778 * 87.08129 * 140.06364 * 10 8 7 12 12 H 1.08999 * 113.61485 * 89.20147 * 11 10 8 13 13 O 1.42909 * 113.61179 * 220.01599 * 11 10 8 14 14 C 1.53781 * 87.08122 * 334.56482 * 11 10 8 15 15 C 1.39853 * 120.87411 * 180.25266 * 5 4 2 16 16 C 1.35987 * 120.93055 * 359.44509 * 15 5 4 17 17 C 1.40601 * 119.73130 * 0.54845 * 16 15 5 18 18 C 1.40487 * 121.22273 * 179.74922 * 17 16 15 19 19 C 1.36136 * 119.66995 * 179.97438 * 18 17 16 20 20 C 1.39336 * 120.99514 * 359.97438 * 19 18 17 21 21 C 1.36124 * 120.97980 * 0.02562 * 20 19 18 22 22 C 1.40464 * 120.18895 * 62.54361 * 4 2 1 23 23 H 0.96699 * 113.99649 * 185.54463 * 1 2 3 24 24 H 1.08998 * 109.46705 * 119.99171 * 2 1 3 25 25 H 1.48499 * 110.00143 * 63.36873 * 3 2 1 26 26 H 1.48499 * 110.00151 * 184.69354 * 3 2 1 27 27 H 1.08994 * 109.47235 * 59.99974 * 7 6 5 28 28 H 1.09003 * 109.47124 * 299.99677 * 7 6 5 29 29 H 1.08998 * 113.61510 * 25.51056 * 10 8 7 30 30 H 1.09007 * 113.68750 * 254.62482 * 10 8 7 31 31 H 0.96698 * 113.99589 * 179.97438 * 13 11 10 32 32 H 1.09008 * 113.61097 * 139.98149 * 14 11 10 33 33 H 1.08993 * 113.61637 * 270.88328 * 14 11 10 34 34 H 1.07993 * 119.53711 * 179.73078 * 15 5 4 35 35 H 1.07997 * 120.13281 * 180.29681 * 16 15 5 36 36 H 1.07992 * 120.16191 * 359.95519 * 18 17 16 37 37 H 1.08003 * 119.50317 * 180.02562 * 19 18 17 38 38 H 1.07998 * 119.50836 * 180.02562 * 20 19 18 39 39 H 1.08001 * 120.16631 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.6732 -1.8508 -1.1102 6 8 2.9555 -2.3398 0.1259 7 6 3.7349 -3.5359 0.1878 8 6 3.9491 -3.9298 1.6507 9 1 3.0429 -3.8412 2.2499 10 6 4.6751 -5.2740 1.8268 11 6 5.4424 -4.6180 2.9868 12 1 4.9452 -4.7188 3.9515 13 8 6.8247 -4.9776 3.0346 14 6 5.1802 -3.2702 2.2942 15 6 3.1511 -2.5188 -2.2421 16 6 2.8806 -2.0571 -3.4923 17 6 2.1197 -0.8858 -3.6536 18 6 1.8261 -0.3782 -4.9302 19 6 1.0862 0.7583 -5.0498 20 6 0.6132 1.4283 -3.9234 21 6 0.8778 0.9661 -2.6706 22 6 1.6391 -0.2038 -2.5074 23 1 -0.3933 -0.8793 0.0854 24 1 1.7923 -0.5137 0.8901 25 1 1.6296 2.4438 1.2474 26 1 3.5305 1.7718 -0.1142 27 1 4.7009 -3.3652 -0.2872 28 1 3.2111 -4.3382 -0.3319 29 1 5.3080 -5.5425 0.9810 30 1 4.0207 -6.0873 2.1407 31 1 7.3127 -4.5678 3.7619 32 1 4.9325 -2.4649 2.9859 33 1 5.9512 -2.9909 1.5763 34 1 3.7394 -3.4164 -2.1219 35 1 3.2521 -2.5858 -4.3576 36 1 2.1859 -0.8868 -5.8123 37 1 0.8617 1.1459 -6.0325 38 1 0.0280 2.3277 -4.0460 39 1 0.5042 1.4957 -1.8066 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26801_11354858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:58:40 Heat of formation + Delta-G solvation = -48.228339 kcal Electronic energy + Delta-G solvation = -22527.658259 eV Core-core repulsion = 19174.741167 eV Total energy + Delta-G solvation = -3352.917092 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.92303 -40.70553 -39.55569 -37.76317 -36.59890 -35.95900 -33.77709 -30.90421 -30.82377 -29.01621 -26.89352 -26.59876 -24.54158 -23.98812 -23.07420 -21.83316 -20.71830 -19.38563 -18.78746 -18.65667 -17.81735 -17.31109 -17.11571 -16.60602 -16.41360 -15.84513 -15.72108 -15.60200 -15.11013 -14.75805 -14.48797 -14.18747 -14.15494 -13.96253 -13.76164 -13.59639 -13.24418 -12.85386 -12.71882 -12.42206 -12.22031 -12.12413 -12.06842 -11.98629 -11.63501 -11.38457 -11.28560 -10.89241 -10.86578 -10.48947 -9.35175 -8.61787 -4.72978 -0.45464 0.09460 1.05438 1.51293 1.78640 2.00703 2.03072 2.09579 3.11884 3.14245 3.31024 3.41308 3.52071 3.65677 3.77167 3.77304 3.85772 3.92271 4.01854 4.06639 4.09121 4.15144 4.22576 4.26850 4.37751 4.44386 4.51275 4.53552 4.62632 4.63679 4.73758 4.82914 4.91169 4.97650 5.06358 5.19463 5.21851 5.24846 5.27927 5.62501 5.64742 5.74348 6.03637 6.32068 6.59608 6.64954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.066 4.066 3 Si 0.722 3.278 4 C -0.158 4.158 5 C 0.145 3.855 6 O -0.313 6.313 7 C 0.070 3.930 8 C -0.110 4.110 9 H 0.105 0.895 10 C -0.120 4.120 11 C 0.076 3.924 12 H 0.085 0.915 13 O -0.560 6.560 14 C -0.164 4.164 15 C -0.195 4.195 16 C -0.057 4.057 17 C -0.085 4.085 18 C -0.093 4.093 19 C -0.126 4.126 20 C -0.097 4.097 21 C -0.108 4.108 22 C 0.001 3.999 23 H 0.365 0.635 24 H 0.079 0.921 25 H -0.251 1.251 26 H -0.251 1.251 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.381 0.619 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 -0.884 -1.238 1.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.175 4.175 3 Si 0.620 3.380 4 C -0.159 4.159 5 C 0.099 3.901 6 O -0.227 6.227 7 C -0.005 4.005 8 C -0.128 4.128 9 H 0.123 0.877 10 C -0.157 4.157 11 C 0.017 3.983 12 H 0.103 0.897 13 O -0.366 6.366 14 C -0.202 4.202 15 C -0.213 4.213 16 C -0.075 4.075 17 C -0.085 4.085 18 C -0.111 4.111 19 C -0.144 4.144 20 C -0.115 4.115 21 C -0.125 4.125 22 C 0.001 3.999 23 H 0.212 0.788 24 H 0.097 0.903 25 H -0.175 1.175 26 H -0.176 1.176 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.229 0.771 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.413 0.054 -1.217 1.286 hybrid contribution 0.341 -1.674 0.960 1.960 sum 0.755 -1.620 -0.256 1.806 Atomic orbital electron populations 1.86720 1.17154 1.33719 1.96616 1.25115 0.84479 1.12785 0.95084 0.93174 0.80148 0.77357 0.87286 1.19307 1.04466 0.96720 0.95415 1.18429 0.94985 0.92771 0.83911 1.86055 1.68892 1.41930 1.25785 1.22848 0.94866 0.85306 0.97451 1.22328 0.98749 0.97049 0.94681 0.87664 1.23063 0.97801 0.96027 0.98811 1.23286 0.82564 0.94639 0.97771 0.89708 1.86523 1.21140 1.73496 1.55404 1.23786 0.97653 0.97966 1.00805 1.21041 1.05185 1.02514 0.92550 1.20965 0.95166 0.94321 0.97069 1.18049 1.00724 0.96382 0.93325 1.21022 0.97910 0.96351 0.95816 1.20900 0.98540 0.95925 0.99038 1.20964 0.98624 0.99799 0.92144 1.20887 0.98842 0.95107 0.97653 1.17567 0.96501 0.94841 0.90973 0.78802 0.90290 1.17541 1.17556 0.91545 0.91478 0.88782 0.90054 0.77148 0.90812 0.89049 0.85106 0.84860 0.85480 0.85696 0.85290 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.04 11.58 -35.23 -0.41 -1.45 16 2 C -0.07 -0.16 2.62 36.00 0.09 -0.07 16 3 Si 0.72 1.58 29.08 -169.99 -4.94 -3.37 16 4 C -0.16 -0.45 4.58 -104.39 -0.48 -0.93 16 5 C 0.14 0.37 6.61 -39.58 -0.26 0.10 16 6 O -0.31 -0.64 8.81 -19.40 -0.17 -0.81 16 7 C 0.07 -0.02 4.57 37.16 0.17 0.14 16 8 C -0.11 0.10 4.01 -89.81 -0.36 -0.26 16 9 H 0.11 -0.11 8.14 -51.93 -0.42 -0.53 16 10 C -0.12 0.12 7.47 -25.92 -0.19 -0.07 16 11 C 0.08 -0.05 5.21 -25.92 -0.14 -0.19 16 12 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 13 O -0.56 -0.32 13.67 -35.23 -0.48 -0.81 16 14 C -0.16 0.09 7.47 -25.92 -0.19 -0.10 16 15 C -0.19 -0.22 8.93 -39.79 -0.36 -0.58 16 16 C -0.06 -0.05 9.76 -39.50 -0.39 -0.43 16 17 C -0.08 -0.16 5.74 -106.81 -0.61 -0.78 16 18 C -0.09 -0.05 9.77 -39.49 -0.39 -0.43 16 19 C -0.13 0.00 9.95 -39.93 -0.40 -0.40 16 20 C -0.10 -0.01 9.95 -39.93 -0.40 -0.41 16 21 C -0.11 -0.14 7.71 -39.48 -0.30 -0.45 16 22 C 0.00 0.00 5.41 -106.84 -0.58 -0.57 16 23 H 0.36 -0.16 9.11 45.56 0.42 0.25 16 24 H 0.08 0.22 6.76 -51.93 -0.35 -0.13 16 25 H -0.25 -1.04 7.11 56.52 0.40 -0.63 16 26 H -0.25 -1.08 7.11 56.52 0.40 -0.67 16 27 H 0.07 -0.05 7.33 -51.93 -0.38 -0.43 16 28 H 0.07 -0.09 7.65 -51.93 -0.40 -0.49 16 29 H 0.09 -0.06 8.10 -51.93 -0.42 -0.48 16 30 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 31 H 0.38 -1.27 9.12 45.56 0.42 -0.85 16 32 H 0.07 -0.05 8.14 -51.92 -0.42 -0.47 16 33 H 0.09 0.01 7.90 -51.93 -0.41 -0.40 16 34 H 0.13 -0.12 6.21 -52.49 -0.33 -0.44 16 35 H 0.13 -0.22 8.06 -52.49 -0.42 -0.64 16 36 H 0.13 -0.20 8.06 -52.49 -0.42 -0.63 16 37 H 0.13 -0.25 8.06 -52.48 -0.42 -0.67 16 38 H 0.13 -0.28 8.06 -52.49 -0.42 -0.70 16 39 H 0.14 0.06 4.25 -52.49 -0.22 -0.17 16 LS Contribution 318.34 15.07 4.80 4.80 Total: 0.00 -6.05 318.34 -10.24 -16.29 By element: Atomic # 1 Polarization: -4.99 SS G_CDS: -4.26 Total: -9.25 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -4.77 Total: -5.40 kcal Atomic # 8 Polarization: -2.01 SS G_CDS: -1.06 Total: -3.07 kcal Atomic # 14 Polarization: 1.58 SS G_CDS: -4.94 Total: -3.37 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -6.05 -10.24 -16.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26801_11354858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.939 kcal (2) G-P(sol) polarization free energy of solvation -6.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds