Wall clock time and date at job start Tue Mar 9 2021 15:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47136 * 2 1 4 4 C 1.53007 * 109.46920 * 240.00233 * 2 1 3 5 5 O 1.45193 * 109.47279 * 120.00403 * 2 1 3 6 6 C 1.34640 * 117.00395 * 60.00197 * 5 2 1 7 7 O 1.21513 * 119.99625 * 359.97438 * 6 5 2 8 8 N 1.34767 * 120.00264 * 180.02562 * 6 5 2 9 9 C 1.46499 * 120.00128 * 179.97438 * 8 6 5 10 10 H 1.09001 * 112.90992 * 23.74650 * 9 8 6 11 11 C 1.53783 * 113.61841 * 154.99731 * 9 8 6 12 12 C 1.53782 * 87.17410 * 140.02109 * 11 9 8 13 13 H 1.09003 * 113.61019 * 89.16081 * 12 11 9 14 14 C 1.52996 * 113.61538 * 219.97715 * 12 11 9 15 15 O 1.42900 * 109.47141 * 185.00298 * 14 12 11 16 16 C 1.35884 * 117.00043 * 180.02562 * 15 14 12 17 17 C 1.39818 * 119.56972 * 359.97438 * 16 15 14 18 18 C 1.36012 * 120.93493 * 180.02562 * 17 16 15 19 19 C 1.40556 * 119.73135 * 359.97438 * 18 17 16 20 20 C 1.40527 * 121.22086 * 180.02562 * 19 18 17 21 21 C 1.36099 * 119.67211 * 179.97438 * 20 19 18 22 22 C 1.39388 * 120.99355 * 359.97438 * 21 20 19 23 23 C 1.36081 * 120.98638 * 0.02562 * 22 21 20 24 24 C 1.40579 * 119.65904 * 0.02562 * 23 22 21 25 25 C 1.36600 * 119.57167 * 179.72659 * 16 15 14 26 26 C 1.50704 * 120.18782 * 0.02562 * 25 16 15 27 27 O 1.42900 * 109.47463 * 117.22846 * 26 25 16 28 28 Si 1.86296 * 109.47287 * 237.23095 * 26 25 16 29 29 C 1.53781 * 87.08133 * 334.52845 * 12 11 9 30 30 H 1.08998 * 109.46924 * 299.99612 * 1 2 3 31 31 H 1.08994 * 109.47672 * 59.99613 * 1 2 3 32 32 H 1.09003 * 109.47152 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46843 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47377 * 300.00552 * 3 2 1 35 35 H 1.08998 * 109.46898 * 60.00371 * 3 2 1 36 36 H 1.09003 * 109.47284 * 300.00012 * 4 2 1 37 37 H 1.09003 * 109.46835 * 59.99911 * 4 2 1 38 38 H 1.08997 * 109.46870 * 179.97438 * 4 2 1 39 39 H 0.97002 * 120.00151 * 359.97438 * 8 6 5 40 40 H 1.08998 * 113.61425 * 25.43099 * 11 9 8 41 41 H 1.09001 * 113.61371 * 254.61646 * 11 9 8 42 42 H 1.09002 * 109.47157 * 305.00260 * 14 12 11 43 43 H 1.09001 * 109.46917 * 65.00135 * 14 12 11 44 44 H 1.08004 * 119.52936 * 359.97438 * 17 16 15 45 45 H 1.07996 * 120.13333 * 179.97438 * 18 17 16 46 46 H 1.07998 * 120.17034 * 359.95243 * 20 19 18 47 47 H 1.07999 * 119.50752 * 180.02562 * 21 20 19 48 48 H 1.08005 * 119.50176 * 180.02562 * 22 21 20 49 49 H 1.08003 * 120.16770 * 180.02562 * 23 22 21 50 50 H 1.09003 * 109.46715 * 357.23321 * 26 25 16 51 51 H 0.96706 * 113.99988 * 304.42454 * 27 26 25 52 52 H 1.48501 * 109.99680 * 65.02673 * 28 26 25 53 53 H 1.48496 * 110.00020 * 186.34667 * 28 26 25 54 54 H 1.08996 * 113.61666 * 139.98151 * 29 12 11 55 55 H 1.09006 * 113.61374 * 270.79844 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1854 6 6 1.6523 -1.9724 1.3382 7 8 0.9510 -2.5095 0.5038 8 7 2.0673 -2.6655 2.4169 9 6 1.6733 -4.0667 2.5834 10 1 1.4198 -4.5511 1.6404 11 6 2.6462 -4.8812 3.4522 12 6 1.4100 -5.5560 4.0697 13 1 1.0856 -6.4476 3.5331 14 6 1.5234 -5.7792 5.5791 15 8 0.3856 -6.5113 6.0391 16 6 0.3302 -6.7950 7.3668 17 6 1.3636 -6.3696 8.2070 18 6 1.3366 -6.6387 9.5400 19 6 0.2563 -7.3538 10.0850 20 6 0.1963 -7.6486 11.4577 21 6 -0.8650 -8.3426 11.9520 22 6 -1.8970 -8.7669 11.1167 23 6 -1.8732 -8.4999 9.7825 24 6 -0.7928 -7.7862 9.2351 25 6 -0.7370 -7.4876 7.8642 26 6 -1.8451 -7.9345 6.9457 27 8 -1.9109 -9.3619 6.9379 28 14 -3.4668 -7.2413 7.5458 29 6 0.6264 -4.2879 3.6916 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 2.6269 -2.2366 3.0831 40 1 3.2119 -4.2751 4.1598 41 1 3.2761 -5.5629 2.8806 42 1 2.4304 -6.3435 5.7958 43 1 1.5649 -4.8155 6.0867 44 1 2.1955 -5.8202 7.7915 45 1 2.1420 -6.3043 10.1770 46 1 0.9885 -7.3263 12.1172 47 1 -0.9086 -8.5674 13.0074 48 1 -2.7280 -9.3158 11.5346 49 1 -2.6802 -8.8346 9.1475 50 1 -1.6474 -7.5744 5.9360 51 1 -1.0783 -9.7928 6.7005 52 1 -3.4546 -5.7598 7.4440 53 1 -4.5851 -7.7965 6.7419 54 1 -0.3751 -4.4904 3.3122 55 1 0.6387 -3.5201 4.4653 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26801_15734236.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:59:04 Heat of formation + Delta-G solvation = -77.804417 kcal Electronic energy + Delta-G solvation = -35522.521160 eV Core-core repulsion = 30878.299215 eV Total energy + Delta-G solvation = -4644.221946 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.197 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.02910 -41.86049 -40.63187 -39.58192 -38.03746 -37.82306 -36.42700 -35.45722 -34.30593 -33.75430 -30.88309 -30.78519 -29.03868 -28.42565 -28.34948 -26.83407 -26.68087 -25.09576 -24.18064 -23.59983 -22.52332 -21.85179 -21.45928 -20.58679 -19.43431 -19.14071 -18.81111 -18.11529 -17.69471 -17.35109 -17.26111 -17.13196 -16.68545 -16.39431 -16.26033 -15.85258 -15.75725 -15.59046 -15.41682 -15.20839 -14.70922 -14.60882 -14.49363 -14.19317 -14.01446 -13.96724 -13.88281 -13.57386 -13.49383 -13.41153 -13.20502 -12.97615 -12.92012 -12.80929 -12.73961 -12.57562 -12.48115 -12.39095 -12.24158 -12.21021 -12.04114 -11.80886 -11.66730 -11.45209 -11.41879 -11.27033 -11.16731 -11.05214 -10.51564 -10.22184 -9.34521 -8.64116 -4.94753 -0.45770 0.08303 1.03556 1.10743 1.30148 1.53330 1.66698 1.83905 2.04767 2.09143 3.09276 3.13362 3.32791 3.42469 3.48804 3.67043 3.68960 3.71467 3.74866 3.78913 3.83429 3.89185 3.95689 4.00802 4.07982 4.18323 4.21378 4.25887 4.36383 4.44238 4.46535 4.48643 4.53485 4.55723 4.58684 4.62918 4.71029 4.71494 4.72531 4.75066 4.80927 4.82676 4.87799 4.94947 4.97232 5.02456 5.07956 5.13970 5.21411 5.21952 5.26308 5.27608 5.28955 5.42554 5.54070 5.65122 5.68176 5.74816 6.08447 6.32961 6.34532 6.60262 7.28031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.688 5.688 9 C 0.135 3.865 10 H 0.103 0.897 11 C -0.115 4.115 12 C -0.102 4.102 13 H 0.101 0.899 14 C 0.066 3.934 15 O -0.329 6.329 16 C 0.138 3.862 17 C -0.202 4.202 18 C -0.054 4.054 19 C -0.104 4.104 20 C -0.096 4.096 21 C -0.133 4.133 22 C -0.096 4.096 23 C -0.126 4.126 24 C -0.013 4.013 25 C -0.181 4.181 26 C -0.063 4.063 27 O -0.546 6.546 28 Si 0.770 3.230 29 C -0.149 4.149 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.419 0.581 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.154 0.846 45 H 0.160 0.840 46 H 0.149 0.851 47 H 0.146 0.854 48 H 0.149 0.851 49 H 0.141 0.859 50 H 0.068 0.932 51 H 0.376 0.624 52 H -0.282 1.282 53 H -0.281 1.281 54 H 0.057 0.943 55 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.144 1.917 5.268 8.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.283 6.283 6 C 0.396 3.604 7 O -0.487 6.487 8 N -0.348 5.348 9 C 0.031 3.969 10 H 0.121 0.879 11 C -0.153 4.153 12 C -0.121 4.121 13 H 0.119 0.881 14 C -0.008 4.008 15 O -0.243 6.243 16 C 0.093 3.907 17 C -0.220 4.220 18 C -0.072 4.072 19 C -0.105 4.105 20 C -0.114 4.114 21 C -0.151 4.151 22 C -0.114 4.114 23 C -0.143 4.143 24 C -0.013 4.013 25 C -0.182 4.182 26 C -0.172 4.172 27 O -0.353 6.353 28 Si 0.673 3.327 29 C -0.188 4.188 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.256 0.744 40 H 0.133 0.867 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.172 0.828 45 H 0.177 0.823 46 H 0.166 0.834 47 H 0.163 0.837 48 H 0.166 0.834 49 H 0.158 0.842 50 H 0.086 0.914 51 H 0.224 0.776 52 H -0.208 1.208 53 H -0.208 1.208 54 H 0.076 0.924 55 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.368 2.278 4.591 6.734 hybrid contribution 1.292 0.117 -1.308 1.843 sum 5.661 2.394 3.283 6.968 Atomic orbital electron populations 1.22474 0.94233 1.03568 1.03488 1.22357 0.94327 0.92684 0.81568 1.21890 1.02534 0.90753 1.04246 1.22473 1.01717 1.02177 0.97329 1.86310 1.71503 1.23263 1.47266 1.18457 0.78614 0.80819 0.82533 1.90907 1.42237 1.70985 1.44582 1.44734 1.54906 1.12184 1.22929 1.22580 0.96861 0.78734 0.98722 0.87905 1.23323 0.95667 0.98143 0.98150 1.22271 0.98163 0.98044 0.93621 0.88096 1.23039 0.87393 0.96210 0.94208 1.86059 1.46029 1.71409 1.20818 1.18630 0.94101 0.94868 0.83147 1.21273 1.00024 1.05872 0.94856 1.21303 0.96931 0.94084 0.94870 1.18341 0.95669 1.01749 0.94698 1.21328 0.99190 0.97506 0.93326 1.21218 0.94129 0.98490 1.01266 1.21279 0.99267 0.97890 0.92973 1.20978 0.97166 0.99916 0.96208 1.17756 0.95220 0.97123 0.91203 1.19306 0.97715 1.06814 0.94342 1.24998 1.07951 0.85091 0.99155 1.86645 1.39232 1.16552 1.92842 0.92747 0.72840 0.76224 0.90898 1.23677 0.98606 0.97867 0.98666 0.92032 0.89438 0.91980 0.91021 0.88320 0.91203 0.91898 0.89473 0.91772 0.74389 0.86714 0.88687 0.89803 0.90416 0.82819 0.82284 0.83354 0.83653 0.83361 0.84195 0.91418 0.77551 1.20835 1.20785 0.92362 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.77 8.37 71.98 0.60 -0.16 16 2 C 0.13 0.44 1.13 -10.79 -0.01 0.43 16 3 C -0.14 0.26 8.85 71.98 0.64 0.89 16 4 C -0.18 -0.66 8.37 71.98 0.60 -0.05 16 5 O -0.37 -2.11 9.94 -55.49 -0.55 -2.66 16 6 C 0.64 4.55 8.06 129.79 1.05 5.60 16 7 O -0.60 -7.75 11.48 19.80 0.23 -7.52 16 8 N -0.69 0.01 5.36 -567.18 -3.04 -3.03 16 9 C 0.13 -0.18 4.25 45.61 0.19 0.02 16 10 H 0.10 0.30 7.47 -2.39 -0.02 0.29 16 11 C -0.11 0.88 7.39 31.12 0.23 1.11 16 12 C -0.10 0.43 4.01 -10.27 -0.04 0.39 16 13 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 14 C 0.07 -0.27 4.56 71.98 0.33 0.06 16 15 O -0.33 -1.04 8.81 -92.24 -0.81 -1.85 16 16 C 0.14 0.54 6.61 22.27 0.15 0.68 16 17 C -0.20 0.12 8.93 22.13 0.20 0.32 16 18 C -0.05 0.07 9.76 22.32 0.22 0.28 16 19 C -0.10 -0.21 5.74 -21.28 -0.12 -0.34 16 20 C -0.10 0.13 9.77 22.33 0.22 0.35 16 21 C -0.13 0.28 9.95 22.05 0.22 0.50 16 22 C -0.10 0.09 9.95 22.04 0.22 0.31 16 23 C -0.13 -0.30 7.70 22.34 0.17 -0.13 16 24 C -0.01 -0.06 5.41 -21.30 -0.12 -0.17 16 25 C -0.18 -1.02 4.51 -19.72 -0.09 -1.11 16 26 C -0.06 -0.41 2.64 71.24 0.19 -0.23 16 27 O -0.55 -3.09 11.63 -148.98 -1.73 -4.82 16 28 Si 0.77 5.17 29.07 68.60 1.99 7.16 16 29 C -0.15 0.16 7.44 31.21 0.23 0.40 16 30 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.06 0.61 5.88 -2.39 -0.01 0.60 16 33 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.06 0.58 5.88 -2.39 -0.01 0.56 16 37 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.42 -2.24 8.84 -92.71 -0.82 -3.06 16 40 H 0.11 -1.34 8.08 -2.39 -0.02 -1.36 16 41 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 42 H 0.08 -0.61 7.63 -2.39 -0.02 -0.63 16 43 H 0.08 -0.50 7.33 -2.39 -0.02 -0.52 16 44 H 0.15 -0.95 6.21 -2.91 -0.02 -0.97 16 45 H 0.16 -1.15 8.06 -2.91 -0.02 -1.17 16 46 H 0.15 -0.95 8.06 -2.91 -0.02 -0.97 16 47 H 0.15 -0.97 8.06 -2.91 -0.02 -0.99 16 48 H 0.15 -0.85 8.06 -2.91 -0.02 -0.87 16 49 H 0.14 0.22 4.26 -2.91 -0.01 0.20 16 50 H 0.07 0.56 6.77 -2.39 -0.02 0.54 16 51 H 0.38 0.29 9.03 -74.05 -0.67 -0.38 16 52 H -0.28 -3.18 7.11 99.48 0.71 -2.48 16 53 H -0.28 -3.28 7.11 99.48 0.71 -2.58 16 54 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 55 H 0.09 -0.22 7.90 -2.38 -0.02 -0.24 16 Total: 0.00 -19.65 432.84 0.63 -19.02 By element: Atomic # 1 Polarization: -14.90 SS G_CDS: -0.53 Total: -15.43 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.07 Total: 9.13 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -3.04 Total: -3.03 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -2.87 Total: -16.86 kcal Atomic # 14 Polarization: 5.17 SS G_CDS: 1.99 Total: 7.16 kcal Total: -19.65 0.63 -19.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26801_15734236.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.782 kcal (2) G-P(sol) polarization free energy of solvation -19.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds