Wall clock time and date at job start Tue Mar 9 2021 16:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00066 * 2 1 4 4 C 1.53008 * 112.90672 * 67.65202 * 3 2 1 5 5 F 1.39894 * 109.46893 * 283.52788 * 4 3 2 6 6 F 1.39904 * 109.47131 * 43.53045 * 4 3 2 7 7 F 1.39897 * 109.46776 * 163.52849 * 4 3 2 8 8 C 1.53778 * 113.61236 * 296.40547 * 3 2 1 9 9 C 1.53782 * 87.08082 * 270.88265 * 8 3 2 10 10 H 1.08999 * 113.61283 * 219.93898 * 9 8 3 11 11 C 1.53000 * 113.61628 * 89.11596 * 9 8 3 12 12 O 1.42892 * 109.47273 * 175.00404 * 11 9 8 13 13 C 1.35879 * 117.00226 * 180.02562 * 12 11 9 14 14 C 1.39812 * 119.56661 * 359.72053 * 13 12 11 15 15 C 1.36021 * 120.93107 * 179.75480 * 14 13 12 16 16 C 1.40548 * 119.73130 * 0.51727 * 15 14 13 17 17 C 1.40532 * 121.22384 * 179.74287 * 16 15 14 18 18 C 1.36094 * 119.67410 * 180.02562 * 17 16 15 19 19 C 1.39379 * 121.00018 * 0.02562 * 18 17 16 20 20 C 1.36090 * 120.98569 * 359.97248 * 19 18 17 21 21 C 1.40583 * 119.65591 * 0.02562 * 20 19 18 22 22 C 1.36610 * 119.57232 * 179.97438 * 13 12 11 23 23 C 1.50707 * 120.18446 * 359.94874 * 22 13 12 24 24 O 1.42893 * 109.46900 * 243.72973 * 23 22 13 25 25 Si 1.86299 * 109.46690 * 123.73047 * 23 22 13 26 26 C 1.53774 * 113.61636 * 198.90550 * 3 2 1 27 27 H 1.09006 * 109.47264 * 179.69025 * 1 2 3 28 28 H 1.09000 * 109.47450 * 299.68308 * 1 2 3 29 29 H 1.08997 * 109.47243 * 59.68999 * 1 2 3 30 30 H 1.09001 * 113.61490 * 156.33382 * 8 3 2 31 31 H 1.08999 * 113.61567 * 25.42687 * 8 3 2 32 32 H 1.09006 * 109.46799 * 295.00021 * 11 9 8 33 33 H 1.08994 * 109.47225 * 55.00064 * 11 9 8 34 34 H 1.08000 * 119.52934 * 0.02562 * 14 13 12 35 35 H 1.07997 * 120.13292 * 180.26330 * 15 14 13 36 36 H 1.08000 * 120.15999 * 0.03353 * 17 16 15 37 37 H 1.07997 * 119.50329 * 180.02562 * 18 17 16 38 38 H 1.07997 * 119.51244 * 179.97438 * 19 18 17 39 39 H 1.07998 * 120.17155 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47250 * 3.73275 * 23 22 13 41 41 H 0.96698 * 114.00164 * 65.64282 * 24 23 22 42 42 H 1.48507 * 109.99690 * 183.55280 * 25 23 22 43 43 H 1.48495 * 110.00231 * 304.87048 * 25 23 22 44 44 H 1.08998 * 113.61630 * 334.56517 * 26 3 2 45 45 H 1.09003 * 113.61769 * 203.66129 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7629 2.0675 1.3036 5 9 0.4467 2.5411 1.3243 6 9 1.9675 1.2108 2.3906 7 9 2.6484 3.1472 1.3876 8 6 1.6883 2.1230 -1.2620 9 6 2.9485 1.5039 -1.8892 10 1 3.5291 2.2066 -2.4868 11 6 2.6864 0.1823 -2.6141 12 8 3.8850 -0.2534 -3.2586 13 6 3.8232 -1.4199 -3.9527 14 6 2.6204 -2.1310 -4.0011 15 6 2.5261 -3.2991 -4.6917 16 6 3.6540 -3.8076 -5.3586 17 6 3.5932 -5.0140 -6.0768 18 6 4.7049 -5.4776 -6.7104 19 6 5.9068 -4.7739 -6.6584 20 6 6.0037 -3.6023 -5.9728 21 6 4.8766 -3.0916 -5.3056 22 6 4.9385 -1.8853 -4.5897 23 6 6.2284 -1.1087 -4.5236 24 8 6.5875 -0.6692 -5.8350 25 14 7.5763 -2.2005 -3.8437 26 6 3.4785 1.3261 -0.4565 27 1 -0.3634 -1.0277 -0.0056 28 1 -0.3634 0.5089 0.8928 29 1 -0.3633 0.5186 -0.8872 30 1 1.7586 3.2006 -1.1139 31 1 0.7631 1.8218 -1.7533 32 1 2.3673 -0.5705 -1.8932 33 1 1.9044 0.3257 -3.3597 34 1 1.7528 -1.7452 -3.4865 35 1 1.5894 -3.8357 -4.7241 36 1 2.6689 -5.5704 -6.1257 37 1 4.6550 -6.4048 -7.2619 38 1 6.7743 -5.1641 -7.1698 39 1 6.9415 -3.0676 -5.9416 40 1 6.0989 -0.2437 -3.8732 41 1 5.9728 -0.0278 -6.2169 42 1 8.8323 -1.4226 -3.6931 43 1 7.1640 -2.7587 -2.5309 44 1 3.9985 0.3814 -0.2974 45 1 4.0383 2.1858 -0.0882 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26801_17321600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:04:32 Heat of formation + Delta-G solvation = -174.945638 kcal Electronic energy + Delta-G solvation = -34649.994054 eV Core-core repulsion = 29572.144923 eV Total energy + Delta-G solvation = -5077.849132 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.127 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -51.31079 -48.84567 -48.78294 -42.04418 -41.41290 -39.75034 -37.87913 -37.21702 -36.32699 -33.82121 -31.17039 -30.87973 -29.91613 -28.23626 -27.34456 -26.82517 -26.64513 -24.33465 -23.81513 -23.17135 -21.91854 -20.63800 -19.95080 -19.61299 -19.42670 -19.13732 -18.81503 -17.88824 -17.38731 -17.35089 -16.95406 -16.57023 -16.50200 -15.96768 -15.82243 -15.74883 -15.70258 -15.62321 -15.45533 -15.23092 -15.07815 -14.96459 -14.90382 -14.60884 -14.30356 -14.22594 -14.18639 -13.96672 -13.89958 -13.66519 -13.23978 -13.05992 -12.80247 -12.58821 -12.41069 -12.19140 -12.16926 -12.14580 -11.97111 -11.67267 -11.56105 -11.42221 -10.96287 -10.86076 -10.53547 -9.35226 -8.64701 -4.91860 -0.45897 0.07639 1.02571 1.34596 1.47626 1.57939 1.83431 1.96931 2.03743 2.04962 2.50754 2.57274 2.83662 3.12896 3.24659 3.31626 3.43829 3.50022 3.66806 3.79872 3.86080 3.96019 4.01410 4.08468 4.19957 4.21054 4.24678 4.25347 4.31989 4.39620 4.43454 4.46473 4.47973 4.53364 4.60409 4.63974 4.71885 4.74405 4.77662 4.93350 4.98100 5.07409 5.21474 5.26782 5.28279 5.64175 5.66491 5.67171 5.73742 6.07708 6.30747 6.64684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.346 6.346 3 C 0.037 3.963 4 C 0.432 3.568 5 F -0.183 7.183 6 F -0.189 7.189 7 F -0.177 7.177 8 C -0.131 4.131 9 C -0.094 4.094 10 H 0.113 0.887 11 C 0.066 3.934 12 O -0.324 6.324 13 C 0.137 3.863 14 C -0.202 4.202 15 C -0.057 4.057 16 C -0.105 4.105 17 C -0.097 4.097 18 C -0.133 4.133 19 C -0.096 4.096 20 C -0.125 4.125 21 C -0.015 4.015 22 C -0.177 4.177 23 C -0.064 4.064 24 O -0.543 6.543 25 Si 0.769 3.231 26 C -0.118 4.118 27 H 0.113 0.887 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.074 0.926 41 H 0.375 0.625 42 H -0.279 1.279 43 H -0.284 1.284 44 H 0.085 0.915 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 -1.664 -4.248 6.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.264 6.264 3 C -0.005 4.005 4 C 0.378 3.622 5 F -0.164 7.164 6 F -0.170 7.170 7 F -0.158 7.158 8 C -0.168 4.168 9 C -0.112 4.112 10 H 0.131 0.869 11 C -0.008 4.008 12 O -0.238 6.238 13 C 0.092 3.908 14 C -0.220 4.220 15 C -0.074 4.074 16 C -0.105 4.105 17 C -0.115 4.115 18 C -0.151 4.151 19 C -0.114 4.114 20 C -0.142 4.142 21 C -0.015 4.015 22 C -0.179 4.179 23 C -0.172 4.172 24 O -0.350 6.350 25 Si 0.672 3.328 26 C -0.155 4.155 27 H 0.132 0.868 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.142 0.858 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.167 0.833 35 H 0.176 0.824 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.091 0.909 41 H 0.224 0.776 42 H -0.206 1.206 43 H -0.210 1.210 44 H 0.103 0.897 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.988 -2.215 -3.428 5.059 hybrid contribution -1.616 1.812 1.116 2.672 sum -4.604 -0.404 -2.312 5.168 Atomic orbital electron populations 1.23312 0.78567 1.05359 1.01981 1.88081 1.22234 1.22263 1.93827 1.24143 1.00481 0.86539 0.89347 1.21532 0.74007 0.78495 0.88189 1.93180 1.37003 1.89319 1.96942 1.93188 1.94649 1.70397 1.58799 1.93170 1.68759 1.57248 1.96671 1.23620 0.99928 1.01330 0.91943 1.22039 0.97917 0.96365 0.94860 0.86916 1.22900 0.85570 0.96032 0.96323 1.85988 1.37713 1.36173 1.63963 1.18596 0.93900 0.85986 0.92362 1.21247 0.97477 0.98170 1.05090 1.21283 0.98417 0.94534 0.93200 1.18346 0.93503 0.97099 1.01521 1.21329 1.00097 0.94291 0.95802 1.21224 0.92751 1.01061 1.00064 1.21295 0.99097 0.93842 0.97162 1.20995 0.97106 0.97551 0.98590 1.17787 0.94399 0.92782 0.96575 1.19383 0.95362 0.98148 1.04977 1.25011 1.01464 1.01901 0.88845 1.86669 1.53528 1.64999 1.29778 0.92523 0.74800 0.84871 0.80605 1.23342 0.91132 1.05364 0.95695 0.86844 0.93712 0.90803 0.85847 0.87138 0.90145 0.89894 0.83279 0.82438 0.83434 0.83593 0.83140 0.83879 0.90866 0.77604 1.20599 1.21011 0.89680 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.42 113.37 1.18 1.17 16 2 O -0.35 0.07 8.35 -148.98 -1.24 -1.17 16 3 C 0.04 -0.05 0.85 -10.27 -0.01 -0.06 16 4 C 0.43 1.06 2.56 71.98 0.18 1.24 16 5 F -0.18 -0.45 15.35 44.97 0.69 0.24 16 6 F -0.19 -1.30 17.10 44.97 0.77 -0.53 16 7 F -0.18 -0.48 15.82 44.97 0.71 0.23 16 8 C -0.13 0.85 6.51 31.12 0.20 1.05 16 9 C -0.09 0.42 4.20 -10.27 -0.04 0.38 16 10 H 0.11 -0.63 8.14 -2.39 -0.02 -0.64 16 11 C 0.07 -0.17 4.31 71.98 0.31 0.14 16 12 O -0.32 -1.04 8.81 -92.19 -0.81 -1.85 16 13 C 0.14 0.63 6.61 22.27 0.15 0.78 16 14 C -0.20 -0.19 8.93 22.14 0.20 0.01 16 15 C -0.06 -0.01 9.76 22.32 0.22 0.21 16 16 C -0.10 -0.31 5.74 -21.28 -0.12 -0.44 16 17 C -0.10 0.05 9.77 22.33 0.22 0.27 16 18 C -0.13 0.21 9.95 22.05 0.22 0.43 16 19 C -0.10 0.07 9.95 22.04 0.22 0.29 16 20 C -0.13 -0.33 7.70 22.34 0.17 -0.16 16 21 C -0.02 -0.08 5.41 -21.30 -0.12 -0.19 16 22 C -0.18 -1.06 4.60 -19.71 -0.09 -1.15 16 23 C -0.06 -0.35 2.62 71.24 0.19 -0.17 16 24 O -0.54 -2.29 11.69 -148.98 -1.74 -4.03 16 25 Si 0.77 4.55 28.92 68.60 1.98 6.53 16 26 C -0.12 0.22 6.89 31.12 0.21 0.43 16 27 H 0.11 -0.82 8.14 -2.38 -0.02 -0.84 16 28 H 0.04 -0.11 6.46 -2.39 -0.02 -0.12 16 29 H 0.07 -0.63 6.59 -2.39 -0.02 -0.65 16 30 H 0.12 -1.01 8.06 -2.39 -0.02 -1.03 16 31 H 0.11 -1.04 6.57 -2.39 -0.02 -1.06 16 32 H 0.08 -0.13 5.60 -2.38 -0.01 -0.14 16 33 H 0.08 -0.48 7.64 -2.39 -0.02 -0.50 16 34 H 0.15 -0.57 6.21 -2.91 -0.02 -0.59 16 35 H 0.16 -0.91 8.06 -2.91 -0.02 -0.94 16 36 H 0.15 -0.82 8.06 -2.91 -0.02 -0.84 16 37 H 0.15 -0.92 8.06 -2.91 -0.02 -0.95 16 38 H 0.15 -0.88 8.06 -2.91 -0.02 -0.91 16 39 H 0.14 0.16 4.20 -2.91 -0.01 0.15 16 40 H 0.07 0.46 6.77 -2.39 -0.02 0.44 16 41 H 0.38 -0.31 9.11 -74.06 -0.67 -0.99 16 42 H -0.28 -2.87 7.11 99.48 0.71 -2.16 16 43 H -0.28 -3.13 7.11 99.48 0.71 -2.42 16 44 H 0.08 0.08 8.10 -2.39 -0.02 0.06 16 45 H 0.12 -0.42 7.01 -2.39 -0.02 -0.43 16 Total: 0.00 -14.97 367.83 4.07 -10.90 By element: Atomic # 1 Polarization: -14.98 SS G_CDS: 0.43 Total: -14.55 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 3.29 Total: 4.24 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -3.80 Total: -7.06 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 2.17 Total: -0.06 kcal Atomic # 14 Polarization: 4.55 SS G_CDS: 1.98 Total: 6.53 kcal Total: -14.97 4.07 -10.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26801_17321600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.046 kcal (2) G-P(sol) polarization free energy of solvation -14.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds