Wall clock time and date at job start Tue Mar 9 2021 16:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35998 * 116.99443 * 2 1 4 4 C 1.39156 * 120.07216 * 180.02562 * 3 2 1 5 5 O 1.35993 * 120.07140 * 359.97438 * 4 3 2 6 6 C 1.42898 * 117.00031 * 179.73031 * 5 4 3 7 7 C 1.53002 * 109.47362 * 180.02562 * 6 5 4 8 8 H 1.09003 * 112.90345 * 43.74942 * 7 6 5 9 9 C 1.53781 * 113.61609 * 174.99888 * 7 6 5 10 10 C 1.53781 * 87.08070 * 139.98229 * 9 7 6 11 11 H 1.09002 * 113.61445 * 89.11830 * 10 9 7 12 12 O 1.42905 * 113.61505 * 219.93701 * 10 9 7 13 13 C 1.53786 * 87.17350 * 334.52830 * 10 9 7 14 14 C 1.38564 * 119.85498 * 179.72814 * 4 3 2 15 15 C 1.38248 * 119.99971 * 0.26515 * 14 4 3 16 16 C 1.38247 * 120.14189 * 0.02562 * 15 14 4 17 17 C 1.50704 * 119.92537 * 179.97438 * 16 15 14 18 18 O 1.42902 * 109.47386 * 245.00046 * 17 16 15 19 19 Si 1.86306 * 109.46834 * 4.99800 * 17 16 15 20 20 C 1.38246 * 120.15163 * 359.97438 * 16 15 14 21 21 H 1.08994 * 109.47732 * 60.00133 * 1 2 3 22 22 H 1.09006 * 109.46342 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47046 * 299.99454 * 1 2 3 24 24 H 1.08997 * 109.47241 * 59.99954 * 6 5 4 25 25 H 1.09006 * 109.47242 * 300.00397 * 6 5 4 26 26 H 1.08999 * 113.61181 * 25.43284 * 9 7 6 27 27 H 1.09000 * 113.69133 * 254.54111 * 9 7 6 28 28 H 0.96696 * 114.00145 * 178.47219 * 12 10 9 29 29 H 1.08992 * 113.61675 * 140.02412 * 13 10 9 30 30 H 1.09000 * 113.60973 * 270.92699 * 13 10 9 31 31 H 1.07996 * 120.00259 * 180.25002 * 14 4 3 32 32 H 1.07993 * 119.92487 * 180.02562 * 15 14 4 33 33 H 1.08998 * 109.47107 * 124.99847 * 17 16 15 34 34 H 0.96697 * 113.99539 * 59.99522 * 18 17 16 35 35 H 1.48497 * 109.99726 * 58.68325 * 19 17 16 36 36 H 1.48500 * 109.99880 * 179.97438 * 19 17 16 37 37 H 1.08003 * 119.99741 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4359 1.2865 -0.0005 5 8 4.1795 0.1479 -0.0005 6 6 5.6002 0.3010 -0.0071 7 6 6.2619 -1.0786 -0.0067 8 1 5.7883 -1.7764 -0.6973 9 6 7.7934 -1.0274 -0.1364 10 6 7.8403 -2.1650 0.8973 11 1 7.7983 -3.1599 0.4539 12 8 8.8941 -2.0274 1.8527 13 6 6.4795 -1.6584 1.4038 14 6 4.0601 2.5236 -0.0062 15 6 3.3027 3.6801 -0.0058 16 6 1.9222 3.6058 0.0008 17 6 1.1013 4.8696 0.0018 18 8 0.3700 4.9617 1.2261 19 14 2.2298 6.3432 -0.1598 20 6 1.2931 2.3748 0.0065 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3632 -1.0278 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 5.9103 0.8533 0.8800 25 1 5.9026 0.8483 -0.8999 26 1 8.2308 -0.0949 0.2204 27 1 8.1595 -1.3170 -1.1213 28 1 8.9144 -2.7274 2.5194 29 1 5.7843 -2.4574 1.6610 30 1 6.5584 -0.8981 2.1809 31 1 5.1384 2.5843 -0.0107 32 1 3.7905 4.6436 -0.0107 33 1 0.4052 4.8513 -0.8368 34 1 0.9270 4.9826 2.0162 35 1 3.0191 6.2432 -1.4137 36 1 1.4323 7.5959 -0.1607 37 1 0.2145 2.3197 0.0112 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26802_11354858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:09:02 Heat of formation + Delta-G solvation = -98.081750 kcal Electronic energy + Delta-G solvation = -20316.364043 eV Core-core repulsion = 17027.281374 eV Total energy + Delta-G solvation = -3289.082669 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.124 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.68281 -40.52430 -39.19771 -38.82812 -36.94367 -35.99577 -31.92194 -31.40315 -29.35590 -28.43603 -26.80859 -26.16314 -24.24706 -22.83216 -22.28410 -20.68508 -19.48429 -18.66709 -18.32193 -18.01159 -17.19101 -17.13838 -16.56589 -16.19959 -16.09871 -16.01011 -15.67043 -15.53191 -14.94804 -14.54605 -14.28664 -13.88430 -13.65824 -13.50852 -13.41756 -12.84054 -12.72936 -12.51169 -12.33098 -12.20801 -12.08486 -11.98189 -11.72196 -11.71298 -11.26291 -10.80001 -10.44758 -9.74638 -8.80348 -5.04307 0.22877 0.33317 1.28469 1.63142 1.96398 2.10308 2.31180 2.61485 3.18926 3.40602 3.44030 3.50276 3.63772 3.72588 3.80897 3.86162 3.92866 4.10299 4.17108 4.21724 4.25779 4.26920 4.36707 4.40062 4.50588 4.59671 4.60451 4.66342 4.71174 4.72295 4.92497 5.04127 5.06254 5.17201 5.31167 5.40655 5.61243 6.08883 6.55828 6.59674 6.66130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.100 3.900 4 C 0.109 3.891 5 O -0.300 6.300 6 C 0.069 3.931 7 C -0.108 4.108 8 H 0.106 0.894 9 C -0.120 4.120 10 C 0.076 3.924 11 H 0.084 0.916 12 O -0.561 6.561 13 C -0.163 4.163 14 C -0.170 4.170 15 C -0.111 4.111 16 C -0.119 4.119 17 C -0.065 4.065 18 O -0.541 6.541 19 Si 0.688 3.312 20 C -0.146 4.146 21 H 0.055 0.945 22 H 0.102 0.898 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.380 0.620 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.112 0.888 34 H 0.379 0.621 35 H -0.257 1.257 36 H -0.255 1.255 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 -0.719 1.416 2.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.054 3.946 4 C 0.063 3.937 5 O -0.214 6.214 6 C -0.006 4.006 7 C -0.127 4.127 8 H 0.124 0.876 9 C -0.157 4.157 10 C 0.017 3.983 11 H 0.102 0.898 12 O -0.366 6.366 13 C -0.201 4.201 14 C -0.188 4.188 15 C -0.129 4.129 16 C -0.119 4.119 17 C -0.176 4.176 18 O -0.346 6.346 19 Si 0.590 3.410 20 C -0.165 4.165 21 H 0.073 0.927 22 H 0.120 0.880 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.228 0.772 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.130 0.870 34 H 0.227 0.773 35 H -0.182 1.182 36 H -0.180 1.180 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.336 0.112 0.162 1.351 hybrid contribution -0.641 -0.699 -0.022 0.949 sum 0.696 -0.587 0.140 0.921 Atomic orbital electron populations 1.23112 0.78214 1.04260 1.01405 1.86192 1.21262 1.25588 1.88824 1.18296 0.89166 0.85392 1.01729 1.18259 0.88222 0.86179 1.01006 1.86183 1.18504 1.28148 1.88585 1.22842 0.78226 0.97900 1.01599 1.22357 0.95120 0.96161 0.99044 0.87620 1.23059 0.93862 0.99637 0.99161 1.23303 0.86293 0.98257 0.90486 0.89786 1.86516 1.52622 1.53718 1.43780 1.23818 0.97757 1.01718 0.96791 1.21030 1.00589 0.90767 1.06455 1.20677 0.92739 0.97786 1.01700 1.20011 0.93677 0.95187 1.03075 1.25019 1.00805 1.01683 0.90078 1.86497 1.36427 1.96640 1.15051 0.94720 0.81821 0.76695 0.87808 1.20919 1.00277 0.90524 1.04786 0.92661 0.87966 0.92465 0.91563 0.91647 0.88794 0.90133 0.77196 0.90729 0.89060 0.84308 0.85145 0.87043 0.77335 1.18205 1.17966 0.84381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 9.81 101.05 0.99 0.99 16 2 O -0.31 -1.09 10.28 -34.24 -0.35 -1.44 16 3 C 0.10 0.32 6.70 -39.12 -0.26 0.06 16 4 C 0.11 0.31 6.70 -39.12 -0.26 0.05 16 5 O -0.30 -0.92 9.92 -34.22 -0.34 -1.26 16 6 C 0.07 0.00 4.58 37.16 0.17 0.17 16 7 C -0.11 0.06 4.02 -89.67 -0.36 -0.30 16 8 H 0.11 -0.04 8.14 -51.93 -0.42 -0.46 16 9 C -0.12 0.11 7.47 -25.92 -0.19 -0.09 16 10 C 0.08 -0.05 5.20 -25.92 -0.13 -0.18 16 11 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 12 O -0.56 -0.31 13.67 -35.23 -0.48 -0.79 16 13 C -0.16 0.08 7.48 -25.77 -0.19 -0.11 16 14 C -0.17 -0.12 9.04 -39.46 -0.36 -0.48 16 15 C -0.11 -0.01 8.66 -39.57 -0.34 -0.35 16 16 C -0.12 -0.10 5.35 -104.61 -0.56 -0.66 16 17 C -0.07 -0.01 2.80 36.01 0.10 0.10 16 18 O -0.54 -0.22 12.83 -35.23 -0.45 -0.68 16 19 Si 0.69 -0.61 29.80 -169.99 -5.06 -5.67 16 20 C -0.15 -0.26 8.67 -39.46 -0.34 -0.60 16 21 H 0.05 -0.06 7.68 -51.93 -0.40 -0.46 16 22 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 23 H 0.06 -0.06 7.65 -51.93 -0.40 -0.45 16 24 H 0.07 -0.06 7.37 -51.93 -0.38 -0.44 16 25 H 0.07 -0.07 7.66 -51.93 -0.40 -0.47 16 26 H 0.09 -0.06 8.10 -51.93 -0.42 -0.48 16 27 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 28 H 0.38 -1.28 9.12 45.56 0.42 -0.86 16 29 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.09 0.00 7.90 -51.93 -0.41 -0.41 16 31 H 0.14 -0.21 6.30 -52.49 -0.33 -0.54 16 32 H 0.13 -0.28 4.89 -52.49 -0.26 -0.54 16 33 H 0.11 0.05 7.96 -51.93 -0.41 -0.37 16 34 H 0.38 -1.27 8.70 45.56 0.40 -0.88 16 35 H -0.26 -0.38 7.11 56.52 0.40 0.03 16 36 H -0.25 -0.59 7.11 56.52 0.40 -0.19 16 37 H 0.14 0.10 6.30 -52.48 -0.33 -0.23 16 LS Contribution 307.55 15.07 4.63 4.63 Total: 0.00 -7.53 307.55 -8.04 -15.57 By element: Atomic # 1 Polarization: -4.70 SS G_CDS: -4.24 Total: -8.94 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.74 Total: -1.41 kcal Atomic # 8 Polarization: -2.55 SS G_CDS: -1.63 Total: -4.17 kcal Atomic # 14 Polarization: -0.61 SS G_CDS: -5.06 Total: -5.67 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -7.53 -8.04 -15.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26802_11354858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.511 kcal (2) G-P(sol) polarization free energy of solvation -7.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds