Wall clock time and date at job start Tue Mar 9 2021 16:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35998 * 116.99460 * 2 1 4 4 C 1.39159 * 120.06892 * 179.97438 * 3 2 1 5 5 O 1.35994 * 120.07215 * 0.02562 * 4 3 2 6 6 C 1.42901 * 116.99953 * 179.72031 * 5 4 3 7 7 C 1.53001 * 109.47278 * 179.97438 * 6 5 4 8 8 H 1.08999 * 112.84834 * 43.80941 * 7 6 5 9 9 C 1.53778 * 113.61263 * 175.00046 * 7 6 5 10 10 C 1.53787 * 87.08035 * 139.98349 * 9 7 6 11 11 H 1.08994 * 113.61447 * 220.02014 * 10 9 7 12 12 N 1.46496 * 113.61210 * 89.11438 * 10 9 7 13 13 C 1.34774 * 120.00099 * 155.00440 * 12 10 9 14 14 O 1.21516 * 119.99985 * 359.97438 * 13 12 10 15 15 O 1.34638 * 120.00641 * 179.97438 * 13 12 10 16 16 C 1.45194 * 117.00320 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.47039 * 60.00284 * 16 15 13 18 18 C 1.52999 * 109.47220 * 180.02562 * 16 15 13 19 19 C 1.53000 * 109.47165 * 300.00110 * 16 15 13 20 20 C 1.53778 * 113.61526 * 272.50133 * 7 6 5 21 21 C 1.38564 * 119.85147 * 179.72628 * 4 3 2 22 22 C 1.38239 * 120.00410 * 0.27616 * 21 4 3 23 23 C 1.38259 * 120.14027 * 0.02562 * 22 21 4 24 24 C 1.50703 * 119.92395 * 180.02562 * 23 22 21 25 25 O 1.42903 * 109.46819 * 244.99896 * 24 23 22 26 26 Si 1.86298 * 109.47074 * 4.99210 * 24 23 22 27 27 C 1.38244 * 120.15132 * 359.97438 * 23 22 21 28 28 H 1.08998 * 109.47290 * 60.00172 * 1 2 3 29 29 H 1.08999 * 109.46812 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47029 * 300.00041 * 1 2 3 31 31 H 1.09008 * 109.46864 * 60.00214 * 6 5 4 32 32 H 1.09000 * 109.47524 * 300.00103 * 6 5 4 33 33 H 1.08998 * 113.61879 * 25.43831 * 9 7 6 34 34 H 1.08997 * 113.69304 * 254.53918 * 9 7 6 35 35 H 0.97002 * 120.00490 * 335.00104 * 12 10 9 36 36 H 1.08996 * 109.47601 * 59.99664 * 17 16 15 37 37 H 1.09008 * 109.47003 * 180.02562 * 17 16 15 38 38 H 1.09001 * 109.47089 * 299.99766 * 17 16 15 39 39 H 1.08998 * 109.47346 * 59.99747 * 18 16 15 40 40 H 1.09003 * 109.47568 * 180.02562 * 18 16 15 41 41 H 1.09002 * 109.46886 * 299.99911 * 18 16 15 42 42 H 1.09001 * 109.47166 * 60.00109 * 19 16 15 43 43 H 1.09008 * 109.47235 * 180.02562 * 19 16 15 44 44 H 1.09005 * 109.47250 * 299.99731 * 19 16 15 45 45 H 1.08993 * 113.61229 * 105.47191 * 20 7 6 46 46 H 1.09000 * 113.61263 * 334.56841 * 20 7 6 47 47 H 1.08002 * 119.99524 * 180.25978 * 21 4 3 48 48 H 1.07992 * 119.92805 * 179.97438 * 22 21 4 49 49 H 1.08989 * 109.47358 * 124.99501 * 24 23 22 50 50 H 0.96703 * 113.99939 * 179.97438 * 25 24 23 51 51 H 1.48501 * 110.00073 * 178.68242 * 26 24 23 52 52 H 1.48496 * 110.00409 * 300.00606 * 26 24 23 53 53 H 1.07993 * 119.99711 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4359 1.2864 0.0005 5 8 4.1795 0.1478 0.0005 6 6 5.6003 0.3008 -0.0051 7 6 6.2619 -1.0788 -0.0036 8 1 5.7887 -1.7758 -0.6952 9 6 7.7934 -1.0276 -0.1321 10 6 7.8396 -2.1648 0.9021 11 1 8.6419 -2.0587 1.6322 12 7 7.7835 -3.5021 0.3067 13 6 8.3022 -4.5562 0.9672 14 8 8.8169 -4.3972 2.0564 15 8 8.2503 -5.7854 0.4202 16 6 8.8292 -6.8734 1.1878 17 6 8.1068 -6.9905 2.5314 18 6 8.6776 -8.1828 0.4109 19 6 10.3138 -6.5935 1.4296 20 6 6.4779 -1.6568 1.4050 21 6 4.0602 2.5235 -0.0052 22 6 3.3029 3.6800 -0.0057 23 6 1.9223 3.6058 0.0001 24 6 1.1014 4.8696 -0.0010 25 8 0.3694 4.9632 1.2227 26 14 2.2300 6.3429 -0.1635 27 6 1.2931 2.3748 0.0058 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 5.9098 0.8528 0.8825 32 1 5.9033 0.8484 -0.8975 33 1 8.2307 -0.0951 0.2246 34 1 8.1602 -1.3177 -1.1167 35 1 7.3729 -3.6291 -0.5630 36 1 7.0492 -7.1899 2.3592 37 1 8.5418 -7.8071 3.1078 38 1 8.2153 -6.0577 3.0847 39 1 9.1924 -8.0991 -0.5462 40 1 9.1118 -8.9997 0.9872 41 1 7.6200 -8.3824 0.2383 42 1 10.4223 -5.6607 1.9829 43 1 10.7486 -7.4106 2.0054 44 1 10.8285 -6.5102 0.4723 45 1 5.7815 -2.4552 1.6608 46 1 6.5555 -0.8962 2.1819 47 1 5.1385 2.5841 -0.0090 48 1 3.7907 4.6434 -0.0097 49 1 0.4060 4.8504 -0.8400 50 1 -0.1822 5.7545 1.2915 51 1 1.4305 7.5938 -0.1979 52 1 3.1834 6.3805 0.9744 53 1 0.2146 2.3197 0.0099 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26802_15734082.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:11:44 Heat of formation + Delta-G solvation = -126.824579 kcal Electronic energy + Delta-G solvation = -33097.466365 eV Core-core repulsion = 28517.114975 eV Total energy + Delta-G solvation = -4580.351390 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.197 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.99523 -41.66066 -40.54279 -39.30188 -38.81035 -37.87826 -37.10801 -35.38293 -34.12355 -32.03185 -31.42608 -29.40043 -28.44342 -28.39174 -28.32134 -26.74337 -26.16981 -24.84402 -23.63763 -22.78872 -22.22222 -21.18057 -20.33579 -19.46094 -19.32522 -18.60219 -18.17171 -17.81413 -17.58689 -17.25979 -17.12417 -16.64935 -16.29567 -16.14948 -16.03492 -15.83945 -15.70045 -15.49559 -15.35922 -14.99302 -14.56720 -14.39251 -14.16857 -13.99166 -13.90915 -13.55095 -13.44393 -13.36063 -13.27375 -13.08010 -12.94188 -12.89083 -12.78937 -12.59827 -12.51592 -12.34702 -12.24077 -12.10355 -11.98525 -11.78621 -11.72286 -11.59010 -11.42042 -11.18431 -11.13902 -10.50257 -10.20542 -9.76488 -8.86471 -4.91580 0.19366 0.28516 1.11080 1.30278 1.61245 1.69588 1.95261 2.15691 2.30876 2.53999 3.09028 3.37711 3.41407 3.52292 3.68810 3.71879 3.74834 3.76181 3.80294 3.91672 3.92143 3.97850 4.17228 4.27023 4.29025 4.31954 4.32237 4.43939 4.47490 4.48609 4.51093 4.58970 4.60223 4.65209 4.67434 4.73831 4.74188 4.76249 4.81339 4.85440 4.88012 4.99445 5.01605 5.04248 5.07252 5.14961 5.16120 5.24814 5.29914 5.39993 5.46519 5.59180 5.61567 6.08238 6.35166 6.56553 6.59142 7.30250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.076 3.924 4 C 0.092 3.908 5 O -0.322 6.322 6 C 0.060 3.940 7 C -0.104 4.104 8 H 0.098 0.902 9 C -0.114 4.114 10 C 0.130 3.870 11 H 0.097 0.903 12 N -0.684 5.684 13 C 0.646 3.354 14 O -0.593 6.593 15 O -0.370 6.370 16 C 0.127 3.873 17 C -0.180 4.180 18 C -0.138 4.138 19 C -0.179 4.179 20 C -0.148 4.148 21 C -0.166 4.166 22 C -0.115 4.115 23 C -0.085 4.085 24 C -0.085 4.085 25 O -0.560 6.560 26 Si 0.769 3.231 27 C -0.153 4.153 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.416 0.584 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.101 0.899 47 H 0.166 0.834 48 H 0.149 0.851 49 H 0.094 0.906 50 H 0.395 0.605 51 H -0.287 1.287 52 H -0.295 1.295 53 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 2.247 -5.689 6.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.244 6.244 3 C 0.030 3.970 4 C 0.046 3.954 5 O -0.237 6.237 6 C -0.014 4.014 7 C -0.122 4.122 8 H 0.116 0.884 9 C -0.152 4.152 10 C 0.026 3.974 11 H 0.115 0.885 12 N -0.343 5.343 13 C 0.399 3.601 14 O -0.484 6.484 15 O -0.284 6.284 16 C 0.090 3.910 17 C -0.238 4.238 18 C -0.195 4.195 19 C -0.237 4.237 20 C -0.187 4.187 21 C -0.184 4.184 22 C -0.133 4.133 23 C -0.085 4.085 24 C -0.193 4.193 25 O -0.370 6.370 26 Si 0.674 3.326 27 C -0.171 4.171 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.141 0.859 34 H 0.113 0.887 35 H 0.253 0.747 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.119 0.881 47 H 0.183 0.817 48 H 0.167 0.833 49 H 0.112 0.888 50 H 0.245 0.755 51 H -0.214 1.214 52 H -0.223 1.223 53 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.162 1.997 -4.689 5.227 hybrid contribution -1.629 0.255 0.742 1.809 sum -0.468 2.253 -3.947 4.568 Atomic orbital electron populations 1.23284 0.76896 1.05296 1.01961 1.86143 1.22873 1.26224 1.89170 1.18587 0.89902 0.85552 1.02933 1.18513 0.88305 0.86914 1.01691 1.86161 1.20143 1.28588 1.88784 1.23122 0.76829 0.98519 1.02963 1.22585 0.95997 0.95691 0.97944 0.88412 1.23314 0.93311 0.98480 1.00114 1.21861 0.98737 0.79575 0.97250 0.88464 1.44390 1.61704 1.04917 1.23328 1.18320 0.77711 0.81433 0.82604 1.90904 1.50063 1.85514 1.21885 1.86311 1.76000 1.15635 1.50474 1.22369 0.93094 0.84170 0.91329 1.22476 1.00679 1.04022 0.96585 1.21892 1.03707 0.92902 1.00949 1.22472 0.94146 1.04091 1.02946 1.23574 0.96713 1.00879 0.97557 1.21290 1.01860 0.89832 1.05411 1.20963 0.92589 0.98967 1.00758 1.19212 0.93635 0.93529 1.02153 1.25032 1.01165 1.03926 0.89217 1.86555 1.63174 1.48706 1.38555 0.94067 0.78703 0.72768 0.87097 1.21028 1.00584 0.90625 1.04902 0.91523 0.86732 0.92414 0.90581 0.89692 0.85944 0.88689 0.74676 0.92135 0.89362 0.91860 0.91047 0.88244 0.91309 0.91775 0.89423 0.91794 0.92657 0.88069 0.81666 0.83347 0.88799 0.75508 1.21372 1.22304 0.83942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.02 9.81 113.37 1.11 1.13 16 2 O -0.33 -3.01 10.28 -79.66 -0.82 -3.83 16 3 C 0.08 0.63 6.70 22.57 0.15 0.78 16 4 C 0.09 0.59 6.70 22.57 0.15 0.74 16 5 O -0.32 -1.99 9.92 -79.62 -0.79 -2.78 16 6 C 0.06 -0.15 4.58 71.98 0.33 0.18 16 7 C -0.10 0.36 3.89 -10.27 -0.04 0.32 16 8 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 9 C -0.11 0.81 7.39 31.12 0.23 1.04 16 10 C 0.13 -0.10 4.32 45.52 0.20 0.10 16 11 H 0.10 0.22 7.47 -2.39 -0.02 0.20 16 12 N -0.68 -1.03 5.27 -567.60 -2.99 -4.02 16 13 C 0.65 5.08 8.06 129.79 1.05 6.12 16 14 O -0.59 -7.78 11.48 19.79 0.23 -7.55 16 15 O -0.37 -2.45 9.94 -55.48 -0.55 -3.00 16 16 C 0.13 0.49 1.13 -10.79 -0.01 0.48 16 17 C -0.18 -0.82 8.37 71.98 0.60 -0.22 16 18 C -0.14 0.18 8.85 71.98 0.64 0.82 16 19 C -0.18 -0.67 8.37 71.98 0.60 -0.07 16 20 C -0.15 0.02 7.43 31.12 0.23 0.26 16 21 C -0.17 -0.22 9.04 22.35 0.20 -0.01 16 22 C -0.12 -0.15 8.66 22.28 0.19 0.04 16 23 C -0.08 -0.29 5.38 -19.86 -0.11 -0.40 16 24 C -0.09 0.03 2.79 71.24 0.20 0.23 16 25 O -0.56 -1.43 12.81 -148.98 -1.91 -3.34 16 26 Si 0.77 -1.97 29.84 68.60 2.05 0.08 16 27 C -0.15 -0.83 8.67 22.35 0.19 -0.63 16 28 H 0.07 -0.11 7.68 -2.39 -0.02 -0.13 16 29 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.06 0.01 7.65 -2.39 -0.02 -0.01 16 31 H 0.08 -0.36 7.36 -2.38 -0.02 -0.38 16 32 H 0.08 -0.54 7.66 -2.39 -0.02 -0.55 16 33 H 0.12 -1.27 8.10 -2.39 -0.02 -1.29 16 34 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 35 H 0.42 -1.10 8.81 -92.71 -0.82 -1.92 16 36 H 0.06 0.25 8.14 -2.39 -0.02 0.24 16 37 H 0.09 0.07 8.14 -2.38 -0.02 0.05 16 38 H 0.06 0.63 5.88 -2.39 -0.01 0.62 16 39 H 0.07 -0.13 8.14 -2.39 -0.02 -0.14 16 40 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.06 0.58 5.88 -2.39 -0.01 0.57 16 43 H 0.09 0.02 8.14 -2.38 -0.02 0.00 16 44 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 45 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 46 H 0.10 -0.14 7.89 -2.39 -0.02 -0.16 16 47 H 0.17 -0.83 6.30 -2.91 -0.02 -0.85 16 48 H 0.15 -0.46 4.85 -2.91 -0.01 -0.48 16 49 H 0.09 -0.41 7.96 -2.39 -0.02 -0.43 16 50 H 0.39 -2.24 8.74 -74.06 -0.65 -2.89 16 51 H -0.29 -0.44 7.11 99.48 0.71 0.27 16 52 H -0.30 -1.25 7.04 99.48 0.70 -0.55 16 53 H 0.14 0.41 6.30 -2.91 -0.02 0.39 16 Total: 0.00 -23.22 421.94 0.64 -22.58 By element: Atomic # 1 Polarization: -8.52 SS G_CDS: -0.50 Total: -9.02 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.92 Total: 10.89 kcal Atomic # 7 Polarization: -1.03 SS G_CDS: -2.99 Total: -4.02 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -3.84 Total: -20.51 kcal Atomic # 14 Polarization: -1.97 SS G_CDS: 2.05 Total: 0.08 kcal Total: -23.22 0.64 -22.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26802_15734082.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.247 kcal (2) G-P(sol) polarization free energy of solvation -23.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds