Wall clock time and date at job start Tue Mar 9 2021 16:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35996 * 117.00236 * 2 1 4 4 C 1.39154 * 120.07807 * 179.97438 * 3 2 1 5 5 O 1.35996 * 120.06791 * 359.97438 * 4 3 2 6 6 C 1.42902 * 116.99423 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46698 * 180.02562 * 6 5 4 8 8 H 1.08995 * 112.85294 * 314.65876 * 7 6 5 9 9 C 1.53783 * 113.61732 * 85.86354 * 7 6 5 10 10 C 1.53956 * 87.02220 * 139.94889 * 9 7 6 11 11 H 1.09000 * 113.61183 * 89.19856 * 10 9 7 12 12 N 1.46498 * 113.66730 * 220.06638 * 10 9 7 13 13 C 1.34767 * 119.99963 * 252.56059 * 12 10 9 14 14 O 1.21510 * 120.00369 * 359.97438 * 13 12 10 15 15 O 1.34635 * 120.00369 * 179.97438 * 13 12 10 16 16 C 1.45199 * 117.00688 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47117 * 59.99779 * 16 15 13 18 18 C 1.52997 * 109.47438 * 180.02562 * 16 15 13 19 19 C 1.53008 * 109.46793 * 299.99849 * 16 15 13 20 20 C 1.53783 * 87.11112 * 334.63556 * 10 9 7 21 21 C 1.38563 * 119.85258 * 180.02562 * 4 3 2 22 22 C 1.38236 * 120.00420 * 0.02562 * 21 4 3 23 23 C 1.38261 * 120.14487 * 0.02562 * 22 21 4 24 24 C 1.50699 * 119.92587 * 179.97438 * 23 22 21 25 25 O 1.42892 * 109.47249 * 120.00208 * 24 23 22 26 26 Si 1.86298 * 109.47032 * 359.97438 * 24 23 22 27 27 C 1.38245 * 120.14526 * 0.23396 * 23 22 21 28 28 H 1.09004 * 109.46955 * 60.00281 * 1 2 3 29 29 H 1.09004 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47415 * 299.99766 * 1 2 3 31 31 H 1.08997 * 109.47139 * 299.99564 * 6 5 4 32 32 H 1.08998 * 109.47277 * 59.99761 * 6 5 4 33 33 H 1.09000 * 113.60905 * 254.52532 * 9 7 6 34 34 H 1.08996 * 113.61320 * 25.42895 * 9 7 6 35 35 H 0.96999 * 119.99994 * 72.55579 * 12 10 9 36 36 H 1.08994 * 109.47131 * 60.00502 * 17 16 15 37 37 H 1.08997 * 109.47187 * 180.02562 * 17 16 15 38 38 H 1.08998 * 109.46945 * 300.00303 * 17 16 15 39 39 H 1.08995 * 109.47543 * 59.99345 * 18 16 15 40 40 H 1.09003 * 109.47384 * 179.97438 * 18 16 15 41 41 H 1.09003 * 109.46909 * 299.99858 * 18 16 15 42 42 H 1.09000 * 109.46936 * 60.00218 * 19 16 15 43 43 H 1.08997 * 109.47204 * 179.97438 * 19 16 15 44 44 H 1.08995 * 109.46865 * 299.99844 * 19 16 15 45 45 H 1.08994 * 113.61636 * 270.81354 * 20 10 9 46 46 H 1.08999 * 113.61590 * 139.90434 * 20 10 9 47 47 H 1.08001 * 119.99543 * 180.02562 * 21 4 3 48 48 H 1.07997 * 119.93023 * 180.02562 * 22 21 4 49 49 H 1.09004 * 109.46453 * 240.00276 * 24 23 22 50 50 H 0.96703 * 114.00176 * 299.99748 * 25 24 23 51 51 H 1.48506 * 109.99834 * 58.68765 * 26 24 23 52 52 H 1.48502 * 110.00011 * 180.02562 * 26 24 23 53 53 H 1.07991 * 120.00096 * 179.74445 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2864 0.0005 5 8 4.1795 0.1477 0.0016 6 6 5.6003 0.3008 0.0027 7 6 6.2618 -1.0789 0.0031 8 1 5.8077 -1.7658 0.7172 9 6 6.4376 -1.6783 -1.4021 10 6 7.8148 -2.1781 -0.9291 11 1 7.7866 -3.1667 -0.4709 12 7 8.8663 -2.0499 -1.9411 13 6 9.3416 -3.1477 -2.5618 14 8 8.8983 -4.2438 -2.2818 15 8 10.3076 -3.0299 -3.4922 16 6 10.7711 -4.2543 -4.1201 17 6 9.6003 -4.9395 -4.8276 18 6 11.8613 -3.9229 -5.1411 19 6 11.3406 -5.1908 -3.0525 20 6 7.7964 -1.0262 0.0895 21 6 4.0602 2.5234 0.0011 22 6 3.3029 3.6799 0.0016 23 6 1.9223 3.6057 0.0021 24 6 1.1015 4.8696 0.0033 25 8 0.2766 4.9030 -1.1630 26 14 2.2364 6.3470 0.0046 27 6 1.2931 2.3748 0.0070 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 5.9072 0.8501 -0.8873 32 1 5.9058 0.8509 0.8926 33 1 5.7341 -2.4804 -1.6257 34 1 6.4926 -0.9296 -2.1924 35 1 9.2204 -1.1749 -2.1644 36 1 9.1946 -4.2723 -5.5881 37 1 9.9481 -5.8588 -5.2986 38 1 8.8240 -5.1756 -4.0999 39 1 12.6953 -3.4349 -4.6367 40 1 12.2096 -4.8421 -5.6121 41 1 11.4560 -3.2555 -5.9016 42 1 10.5642 -5.4270 -2.3249 43 1 11.6881 -6.1102 -3.5237 44 1 12.1746 -4.7027 -2.5485 45 1 8.2236 -0.0989 -0.2922 46 1 8.1882 -1.3026 1.0683 47 1 5.1385 2.5841 0.0011 48 1 3.7907 4.6434 0.0016 49 1 0.4731 4.8938 0.8937 50 1 0.7701 4.8840 -1.9944 51 1 3.1209 6.3090 -1.1878 52 1 1.4391 7.5999 0.0063 53 1 0.2146 2.3196 0.0116 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26802_15734236.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:11:47 Heat of formation + Delta-G solvation = -130.722689 kcal Electronic energy + Delta-G solvation = -33018.769070 eV Core-core repulsion = 28438.248645 eV Total energy + Delta-G solvation = -4580.520425 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.197 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.94131 -41.67323 -40.49196 -39.28048 -38.92119 -37.90213 -37.00372 -35.42235 -34.24742 -31.92725 -31.41341 -29.36443 -28.43970 -28.39318 -28.32004 -26.75264 -26.20602 -24.95976 -23.46900 -22.61318 -22.08219 -21.41921 -20.56303 -19.58129 -19.08991 -18.56810 -18.11312 -17.81837 -17.27407 -17.23321 -17.14870 -16.64580 -16.45904 -16.14960 -16.05012 -15.86232 -15.81622 -15.52116 -15.37337 -15.11925 -14.54629 -14.39647 -14.17233 -14.07773 -13.55221 -13.47616 -13.41712 -13.36628 -13.21564 -13.08028 -12.93094 -12.88684 -12.63072 -12.55594 -12.50883 -12.40902 -12.25843 -12.16687 -12.04761 -11.93566 -11.69330 -11.62028 -11.41591 -11.26466 -11.12309 -10.62984 -10.16343 -9.76045 -8.86426 -4.90222 0.19816 0.29786 1.15522 1.32352 1.62429 1.71577 1.97570 2.15968 2.31475 2.58037 3.14195 3.39200 3.40699 3.51822 3.64229 3.72224 3.73834 3.75374 3.78920 3.88036 3.92374 3.97067 4.13945 4.25937 4.28153 4.31074 4.31819 4.39077 4.49112 4.50839 4.57242 4.58846 4.63351 4.67111 4.67836 4.71352 4.74125 4.79117 4.80664 4.84877 4.85667 4.95760 5.02997 5.04237 5.08064 5.16608 5.19047 5.24746 5.30568 5.38344 5.49042 5.58654 5.62837 6.08537 6.39404 6.47521 6.58212 7.32963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.331 6.331 3 C 0.075 3.925 4 C 0.091 3.909 5 O -0.324 6.324 6 C 0.064 3.936 7 C -0.102 4.102 8 H 0.098 0.902 9 C -0.147 4.147 10 C 0.134 3.866 11 H 0.102 0.898 12 N -0.688 5.688 13 C 0.642 3.358 14 O -0.596 6.596 15 O -0.369 6.369 16 C 0.127 3.873 17 C -0.180 4.180 18 C -0.137 4.137 19 C -0.180 4.180 20 C -0.114 4.114 21 C -0.165 4.165 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.083 4.083 25 O -0.550 6.550 26 Si 0.773 3.227 27 C -0.153 4.153 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.419 0.581 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.166 0.834 48 H 0.154 0.846 49 H 0.123 0.877 50 H 0.386 0.614 51 H -0.279 1.279 52 H -0.305 1.305 53 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 4.003 1.349 6.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.029 3.971 4 C 0.046 3.954 5 O -0.238 6.238 6 C -0.010 4.010 7 C -0.121 4.121 8 H 0.117 0.883 9 C -0.186 4.186 10 C 0.030 3.970 11 H 0.120 0.880 12 N -0.347 5.347 13 C 0.396 3.604 14 O -0.487 6.487 15 O -0.284 6.284 16 C 0.091 3.909 17 C -0.238 4.238 18 C -0.194 4.194 19 C -0.237 4.237 20 C -0.152 4.152 21 C -0.184 4.184 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.191 4.191 25 O -0.358 6.358 26 Si 0.678 3.322 27 C -0.171 4.171 28 H 0.078 0.922 29 H 0.131 0.869 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.256 0.744 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.134 0.866 46 H 0.113 0.887 47 H 0.183 0.817 48 H 0.171 0.829 49 H 0.141 0.859 50 H 0.235 0.765 51 H -0.205 1.205 52 H -0.234 1.234 53 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.022 3.731 1.449 5.674 hybrid contribution -0.834 -0.226 -1.280 1.545 sum 3.188 3.505 0.169 4.741 Atomic orbital electron populations 1.23270 0.76927 1.05234 1.01944 1.86145 1.22816 1.26419 1.89168 1.18629 0.89934 0.85553 1.02947 1.18544 0.88262 0.86956 1.01681 1.86166 1.20126 1.28760 1.88788 1.23051 0.76853 0.98050 1.03053 1.22257 0.95829 0.95999 0.97995 0.88325 1.23630 0.96450 1.00945 0.97579 1.22590 0.85203 1.00828 0.88343 0.87981 1.44748 1.40832 1.07893 1.41246 1.18459 0.78496 0.84915 0.78576 1.90905 1.63125 1.26608 1.68094 1.86308 1.51556 1.39329 1.51189 1.22348 0.94789 0.81091 0.92700 1.22472 0.98616 1.01758 1.00909 1.21888 0.96381 1.03983 0.97180 1.22473 1.01589 1.00184 0.99459 1.23326 0.93391 0.98636 0.99858 1.21318 1.01905 0.89833 1.05310 1.20978 0.92525 0.98885 1.00482 1.20088 0.94281 0.94810 1.02892 1.25265 1.00582 1.02252 0.90998 1.86559 1.36760 1.95819 1.16676 0.94017 0.78035 0.72551 0.87613 1.21010 1.00489 0.90658 1.04988 0.92216 0.86854 0.91772 0.90335 0.89660 0.92396 0.88746 0.74394 0.92022 0.89472 0.91936 0.91046 0.88351 0.91213 0.91867 0.89507 0.91789 0.86598 0.88665 0.81680 0.82871 0.85910 0.76513 1.20500 1.23377 0.84192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 113.37 1.11 1.13 16 2 O -0.33 -2.79 10.28 -79.65 -0.82 -3.61 16 3 C 0.07 0.50 6.70 22.57 0.15 0.65 16 4 C 0.09 0.43 6.70 22.57 0.15 0.58 16 5 O -0.32 -1.65 9.92 -79.64 -0.79 -2.44 16 6 C 0.06 -0.24 4.57 71.98 0.33 0.09 16 7 C -0.10 0.38 4.00 -10.26 -0.04 0.34 16 8 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 9 C -0.15 0.13 7.45 31.18 0.23 0.36 16 10 C 0.13 -0.17 4.24 45.58 0.19 0.02 16 11 H 0.10 0.31 7.46 -2.39 -0.02 0.29 16 12 N -0.69 0.10 5.36 -567.34 -3.04 -2.95 16 13 C 0.64 4.47 8.06 129.79 1.05 5.51 16 14 O -0.60 -7.68 11.48 19.81 0.23 -7.45 16 15 O -0.37 -2.07 9.94 -55.45 -0.55 -2.62 16 16 C 0.13 0.42 1.13 -10.79 -0.01 0.41 16 17 C -0.18 -0.73 8.37 71.98 0.60 -0.13 16 18 C -0.14 0.27 8.85 71.98 0.64 0.91 16 19 C -0.18 -0.64 8.37 71.98 0.60 -0.03 16 20 C -0.11 0.87 7.40 31.12 0.23 1.10 16 21 C -0.17 0.21 9.04 22.35 0.20 0.41 16 22 C -0.11 0.23 8.66 22.27 0.19 0.43 16 23 C -0.12 -0.06 5.39 -19.86 -0.11 -0.16 16 24 C -0.08 0.08 2.82 71.24 0.20 0.28 16 25 O -0.55 -1.30 12.77 -148.98 -1.90 -3.21 16 26 Si 0.77 -2.46 29.78 68.60 2.04 -0.42 16 27 C -0.15 -0.53 8.60 22.35 0.19 -0.34 16 28 H 0.06 -0.03 7.68 -2.39 -0.02 -0.05 16 29 H 0.11 -0.27 8.14 -2.38 -0.02 -0.29 16 30 H 0.06 -0.09 7.65 -2.39 -0.02 -0.11 16 31 H 0.08 -0.53 7.39 -2.39 -0.02 -0.55 16 32 H 0.09 -0.63 7.66 -2.39 -0.02 -0.65 16 33 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.09 -0.21 7.92 -2.39 -0.02 -0.23 16 35 H 0.42 -2.32 8.84 -92.71 -0.82 -3.14 16 36 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.06 0.61 5.88 -2.39 -0.01 0.59 16 39 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 43 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.12 -1.38 8.08 -2.39 -0.02 -1.40 16 46 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 47 H 0.17 -1.24 6.30 -2.91 -0.02 -1.26 16 48 H 0.15 -1.10 4.87 -2.91 -0.01 -1.12 16 49 H 0.12 -0.28 7.96 -2.38 -0.02 -0.30 16 50 H 0.39 -1.16 8.70 -74.06 -0.64 -1.81 16 51 H -0.28 0.00 7.11 99.48 0.71 0.71 16 52 H -0.31 -1.51 7.11 99.48 0.71 -0.80 16 53 H 0.14 0.29 6.30 -2.92 -0.02 0.27 16 Total: 0.00 -22.37 422.03 0.59 -21.78 By element: Atomic # 1 Polarization: -10.16 SS G_CDS: -0.49 Total: -10.65 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 5.92 Total: 11.56 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: -3.04 Total: -2.95 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -3.84 Total: -19.32 kcal Atomic # 14 Polarization: -2.46 SS G_CDS: 2.04 Total: -0.42 kcal Total: -22.37 0.59 -21.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26802_15734236.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.945 kcal (2) G-P(sol) polarization free energy of solvation -22.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds