Wall clock time and date at job start Tue Mar 9 2021 16:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35993 * 117.00126 * 2 1 4 4 C 1.38524 * 120.07400 * 359.97438 * 3 2 1 5 5 C 1.38280 * 120.00256 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.92765 * 180.02562 * 5 4 3 7 7 O 1.42895 * 109.47148 * 299.99357 * 6 5 4 8 8 Si 1.86305 * 109.47099 * 179.97438 * 6 5 4 9 9 H 1.48498 * 109.47257 * 179.97438 * 8 6 5 10 10 H 1.48505 * 109.47095 * 299.99737 * 8 6 5 11 11 H 1.48497 * 109.47210 * 59.99797 * 8 6 5 12 12 C 1.38214 * 120.14744 * 359.97438 * 5 4 3 13 13 C 1.38284 * 120.14441 * 359.77092 * 12 5 4 14 14 C 1.38530 * 120.00071 * 0.50612 * 13 12 5 15 15 O 1.35983 * 120.07711 * 179.74253 * 14 13 12 16 16 C 1.42906 * 117.00105 * 359.72808 * 15 14 13 17 17 C 1.50693 * 109.47463 * 180.02562 * 16 15 14 18 18 C 1.38233 * 120.00207 * 89.99418 * 17 16 15 19 19 C 1.38234 * 120.00037 * 179.72405 * 18 17 16 20 20 C 1.38234 * 120.00240 * 0.26327 * 19 18 17 21 21 Si 1.86795 * 120.00205 * 180.02562 * 20 19 18 22 22 C 1.86297 * 109.47192 * 89.99958 * 21 20 19 23 23 C 1.86301 * 109.47283 * 209.99980 * 21 20 19 24 24 C 1.86301 * 109.47118 * 329.99845 * 21 20 19 25 25 C 1.38238 * 119.99693 * 359.97438 * 20 19 18 26 26 C 1.38234 * 120.00067 * 0.02562 * 25 20 19 27 27 H 1.08998 * 109.47210 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47107 * 299.99926 * 1 2 3 29 29 H 1.08995 * 109.46930 * 59.99708 * 1 2 3 30 30 H 1.08006 * 119.99637 * 359.97438 * 4 3 2 31 31 H 1.08998 * 109.47206 * 59.99789 * 6 5 4 32 32 H 0.96700 * 114.00257 * 180.02562 * 7 6 5 33 33 H 1.08000 * 119.92854 * 180.02562 * 12 5 4 34 34 H 1.08004 * 120.00496 * 180.27305 * 13 12 5 35 35 H 1.09000 * 109.46902 * 59.99959 * 16 15 14 36 36 H 1.09001 * 109.46622 * 299.99855 * 16 15 14 37 37 H 1.08002 * 120.00157 * 0.02562 * 18 17 16 38 38 H 1.07999 * 120.00009 * 180.28389 * 19 18 17 39 39 H 1.08999 * 109.47282 * 60.00138 * 22 21 20 40 40 H 1.08997 * 109.47709 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47505 * 300.00288 * 22 21 20 42 42 H 1.08998 * 109.47270 * 60.00089 * 23 21 20 43 43 H 1.08997 * 109.47416 * 180.02562 * 23 21 20 44 44 H 1.09006 * 109.46995 * 300.00168 * 23 21 20 45 45 H 1.09002 * 109.46976 * 60.00696 * 24 21 20 46 46 H 1.09005 * 109.47230 * 179.97438 * 24 21 20 47 47 H 1.08998 * 109.47233 * 299.99787 * 24 21 20 48 48 H 1.08001 * 119.99624 * 180.02562 * 25 20 19 49 49 H 1.07999 * 120.00008 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2935 2.3744 -0.0005 5 6 1.9228 3.6057 -0.0011 6 6 1.1021 4.8696 -0.0011 7 8 0.2774 4.9020 -1.1676 8 14 2.2370 6.3471 -0.0011 9 1 1.4282 7.5925 -0.0017 10 1 3.0936 6.3132 1.2115 11 1 3.0937 6.3132 -1.2135 12 6 3.3030 3.6799 -0.0005 13 6 4.0605 2.5230 0.0053 14 6 3.4364 1.2863 0.0001 15 8 4.1799 0.1477 0.0005 16 6 5.6008 0.3006 0.0005 17 6 6.2523 -1.0581 0.0004 18 6 6.5510 -1.6814 -1.1967 19 6 7.1539 -2.9253 -1.1968 20 6 7.4531 -3.5485 0.0003 21 14 8.2684 -5.2291 0.0002 22 6 10.1198 -5.0212 0.0042 23 6 7.7462 -6.1728 1.5192 24 6 7.7524 -6.1696 -1.5230 25 6 7.1499 -2.9274 1.1975 26 6 6.5470 -1.6835 1.1975 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 0.2148 2.3193 -0.0014 31 1 0.4735 4.8947 0.8891 32 1 -0.2794 5.6898 -1.2339 33 1 3.7908 4.6434 -0.0005 34 1 5.1389 2.5836 0.0102 35 1 5.9069 0.8508 0.8903 36 1 5.9070 0.8501 -0.8897 37 1 6.3179 -1.1943 -2.1321 38 1 7.3915 -3.4102 -2.1321 39 1 10.4217 -4.4710 0.8954 40 1 10.5956 -6.0019 0.0046 41 1 10.4254 -4.4691 -0.8845 42 1 6.6630 -6.2945 1.5169 43 1 8.2223 -7.1533 1.5194 44 1 8.0481 -5.6226 2.4105 45 1 8.0581 -5.6175 -2.4118 46 1 8.2286 -7.1501 -1.5233 47 1 6.6693 -6.2913 -1.5254 48 1 7.3841 -3.4141 2.1327 49 1 6.3105 -1.1981 2.1329 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26802_9276060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:34:41 Heat of formation + Delta-G solvation = -89.798909 kcal Electronic energy + Delta-G solvation = -27162.173712 eV Core-core repulsion = 23371.709643 eV Total energy + Delta-G solvation = -3790.464068 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74992 -40.30832 -39.24341 -38.76938 -37.05434 -33.25288 -31.89060 -31.75022 -31.35930 -29.44336 -28.55399 -28.29867 -28.26981 -27.42527 -26.05734 -23.58168 -23.49332 -22.51435 -21.82870 -19.64857 -18.58723 -18.25413 -18.01093 -17.25449 -17.22323 -16.52425 -16.34357 -16.06867 -15.91174 -15.76328 -15.45705 -15.05402 -14.65882 -14.34595 -14.21045 -14.10772 -14.04289 -13.91794 -13.74549 -13.63709 -13.52300 -13.41946 -13.13553 -13.11690 -12.96983 -12.87774 -12.68028 -12.42498 -12.25448 -12.22939 -12.06221 -11.89762 -11.79637 -11.68205 -10.92439 -10.78253 -10.76154 -10.34163 -9.81736 -9.80010 -9.69348 -8.91772 0.14429 0.15456 0.22127 0.51263 1.16311 1.46454 1.51912 1.83264 1.91286 1.98892 2.02273 2.27956 2.29161 2.50434 2.66528 3.01017 3.40738 3.60462 3.74608 3.80438 3.84645 3.92799 4.08676 4.16164 4.22297 4.23104 4.30851 4.33653 4.36286 4.49837 4.51987 4.60355 4.68107 4.70449 4.84612 4.84829 4.88543 4.89092 4.89521 4.90829 4.95919 4.99562 5.06857 5.15095 5.33812 5.39382 5.55021 5.55858 5.59003 5.59459 5.67943 5.70207 6.00564 6.11806 6.50476 6.81808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.080 3.920 4 C -0.146 4.146 5 C -0.084 4.084 6 C -0.080 4.080 7 O -0.563 6.563 8 Si 0.980 3.020 9 H -0.254 1.254 10 H -0.255 1.255 11 H -0.270 1.270 12 C -0.128 4.128 13 C -0.167 4.167 14 C 0.086 3.914 15 O -0.318 6.318 16 C 0.096 3.904 17 C -0.103 4.103 18 C -0.123 4.123 19 C -0.104 4.104 20 C -0.374 4.374 21 Si 1.127 2.873 22 C -0.460 4.460 23 C -0.462 4.462 24 C -0.463 4.463 25 C -0.103 4.103 26 C -0.122 4.122 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.151 0.849 31 H 0.097 0.903 32 H 0.399 0.601 33 H 0.139 0.861 34 H 0.159 0.841 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.140 0.860 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.141 0.859 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 1.270 1.377 1.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.245 6.245 3 C 0.035 3.965 4 C -0.165 4.165 5 C -0.084 4.084 6 C -0.190 4.190 7 O -0.372 6.372 8 Si 0.804 3.196 9 H -0.178 1.178 10 H -0.179 1.179 11 H -0.195 1.195 12 C -0.146 4.146 13 C -0.185 4.185 14 C 0.041 3.959 15 O -0.233 6.233 16 C 0.022 3.978 17 C -0.103 4.103 18 C -0.141 4.141 19 C -0.122 4.122 20 C -0.413 4.413 21 Si 1.314 2.686 22 C -0.567 4.567 23 C -0.570 4.570 24 C -0.570 4.570 25 C -0.121 4.121 26 C -0.140 4.140 27 H 0.132 0.868 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.169 0.831 31 H 0.115 0.885 32 H 0.249 0.751 33 H 0.156 0.844 34 H 0.177 0.823 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.143 0.857 38 H 0.158 0.842 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.158 0.842 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.931 1.109 1.272 1.928 hybrid contribution -0.849 0.627 0.002 1.056 sum 0.082 1.736 1.274 2.155 Atomic orbital electron populations 1.23321 0.76616 1.05381 1.02220 1.86154 1.23154 1.26151 1.89084 1.18577 0.89581 0.85801 1.02549 1.21046 1.00864 0.90180 1.04403 1.19301 0.93252 0.94259 1.01592 1.24762 0.99837 1.02752 0.91638 1.86459 1.59196 1.49073 1.42486 0.85274 0.78523 0.75614 0.80229 1.17784 1.17941 1.19500 1.20926 0.93084 0.98725 1.01878 1.21219 1.01583 0.90095 1.05646 1.18527 0.88502 0.86606 1.02310 1.86235 1.19218 1.28862 1.88970 1.21797 0.77486 0.95268 1.03253 1.19633 1.00346 0.95937 0.94412 1.21378 0.98946 0.96332 0.97481 1.21391 0.97064 0.94355 0.99343 1.28111 1.03931 1.15527 0.93743 0.77174 0.64822 0.60486 0.66086 1.26251 1.21040 1.04917 1.04479 1.26280 1.05787 1.09137 1.15753 1.26288 1.05748 1.09122 1.15851 1.21399 0.97022 0.94373 0.99328 1.21381 0.98881 0.96287 0.97476 0.86758 0.91459 0.91914 0.83100 0.88497 0.75089 0.84383 0.82348 0.89766 0.90015 0.85676 0.84249 0.91310 0.90556 0.91344 0.91491 0.90525 0.90860 0.90915 0.90525 0.91505 0.84163 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.03 9.81 113.37 1.11 1.14 16 2 O -0.33 -3.56 10.28 -79.63 -0.82 -4.38 16 3 C 0.08 0.81 6.70 22.57 0.15 0.96 16 4 C -0.15 -0.91 8.60 22.35 0.19 -0.72 16 5 C -0.08 -0.39 5.42 -19.86 -0.11 -0.50 16 6 C -0.08 0.05 2.81 71.24 0.20 0.25 16 7 O -0.56 -0.04 12.74 -148.98 -1.90 -1.94 16 8 Si 0.98 -1.44 25.06 68.60 1.72 0.28 16 9 H -0.25 0.53 7.11 99.48 0.71 1.23 16 10 H -0.26 0.16 7.11 99.48 0.71 0.87 16 11 H -0.27 -0.62 7.11 99.48 0.71 0.09 16 12 C -0.13 -0.55 8.66 22.27 0.19 -0.35 16 13 C -0.17 -0.83 9.04 22.35 0.20 -0.62 16 14 C 0.09 0.83 6.70 22.57 0.15 0.98 16 15 O -0.32 -3.50 9.91 -79.52 -0.79 -4.29 16 16 C 0.10 0.43 4.87 71.23 0.35 0.78 16 17 C -0.10 -0.63 5.51 -19.87 -0.11 -0.74 16 18 C -0.12 -0.66 9.70 22.27 0.22 -0.44 16 19 C -0.10 -0.30 9.29 22.27 0.21 -0.09 16 20 C -0.37 -0.48 4.59 22.27 0.10 -0.38 16 21 Si 1.13 -5.11 12.32 68.60 0.85 -4.27 16 22 C -0.46 1.42 8.65 113.37 0.98 2.40 16 23 C -0.46 1.45 8.53 113.37 0.97 2.42 16 24 C -0.46 1.38 8.53 113.37 0.97 2.35 16 25 C -0.10 -0.27 9.29 22.27 0.21 -0.07 16 26 C -0.12 -0.62 9.70 22.27 0.22 -0.40 16 27 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.07 -0.08 7.66 -2.39 -0.02 -0.10 16 29 H 0.06 0.00 7.66 -2.39 -0.02 -0.01 16 30 H 0.15 0.41 6.30 -2.91 -0.02 0.39 16 31 H 0.10 -0.48 7.96 -2.39 -0.02 -0.50 16 32 H 0.40 -3.69 8.74 -74.06 -0.65 -4.33 16 33 H 0.14 0.08 4.87 -2.91 -0.01 0.07 16 34 H 0.16 -0.06 6.30 -2.91 -0.02 -0.08 16 35 H 0.08 0.08 7.60 -2.39 -0.02 0.06 16 36 H 0.08 0.12 7.62 -2.39 -0.02 0.10 16 37 H 0.13 0.39 8.06 -2.91 -0.02 0.37 16 38 H 0.14 -0.22 7.43 -2.91 -0.02 -0.24 16 39 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 40 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 41 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 42 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 43 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 44 H 0.07 -0.27 7.69 -2.38 -0.02 -0.29 16 45 H 0.07 -0.25 7.69 -2.39 -0.02 -0.27 16 46 H 0.08 -0.28 7.96 -2.38 -0.02 -0.30 16 47 H 0.07 -0.12 7.96 -2.39 -0.02 -0.13 16 48 H 0.14 -0.27 7.43 -2.91 -0.02 -0.29 16 49 H 0.13 0.32 8.06 -2.91 -0.02 0.29 16 Total: 0.00 -18.39 402.99 6.31 -12.08 By element: Atomic # 1 Polarization: -5.50 SS G_CDS: 1.05 Total: -4.44 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 6.20 Total: 6.95 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -3.50 Total: -10.60 kcal Atomic # 14 Polarization: -6.55 SS G_CDS: 2.56 Total: -3.98 kcal Total: -18.39 6.31 -12.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26802_9276060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.720 kcal (2) G-P(sol) polarization free energy of solvation -18.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds