Wall clock time and date at job start Tue Mar 9 2021 16:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47491 * 2 1 4 4 C 1.53002 * 109.46774 * 240.00260 * 2 1 3 5 5 O 1.42899 * 109.47121 * 120.00557 * 2 1 3 6 6 C 1.42897 * 114.00083 * 59.99730 * 5 2 1 7 7 H 1.08999 * 112.90793 * 341.25336 * 6 5 2 8 8 C 1.53781 * 113.61595 * 112.50279 * 6 5 2 9 9 C 1.54049 * 87.08031 * 139.97562 * 8 6 5 10 10 H 1.09000 * 113.61076 * 89.06984 * 9 8 6 11 11 C 1.52990 * 113.70090 * 220.05426 * 9 8 6 12 12 O 1.42903 * 109.47168 * 272.42623 * 11 9 8 13 13 C 1.35917 * 117.00359 * 180.02562 * 12 11 9 14 14 C 1.38695 * 120.04650 * 179.72285 * 13 12 11 15 15 C 1.50699 * 120.02668 * 359.97438 * 14 13 12 16 16 O 1.42893 * 109.47375 * 74.99643 * 15 14 13 17 17 Si 1.86303 * 109.47110 * 195.00047 * 15 14 13 18 18 C 1.38167 * 119.95098 * 179.73927 * 14 13 12 19 19 C 1.38326 * 120.04665 * 0.53378 * 18 14 13 20 20 Br 1.89097 * 119.95201 * 179.74534 * 19 18 14 21 21 C 1.38361 * 120.08761 * 359.71917 * 19 18 14 22 22 C 1.38116 * 120.04975 * 0.02562 * 21 19 18 23 23 C 1.53781 * 113.61404 * 210.00015 * 6 5 2 24 24 H 1.09005 * 109.46889 * 299.99661 * 1 2 3 25 25 H 1.09006 * 109.47235 * 59.99148 * 1 2 3 26 26 H 1.08996 * 109.47816 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47372 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47323 * 300.00528 * 3 2 1 29 29 H 1.09005 * 109.46777 * 60.00271 * 3 2 1 30 30 H 1.09002 * 109.47440 * 300.00009 * 4 2 1 31 31 H 1.09000 * 109.47397 * 60.00443 * 4 2 1 32 32 H 1.09000 * 109.47214 * 179.97438 * 4 2 1 33 33 H 1.09005 * 113.61471 * 254.53145 * 8 6 5 34 34 H 1.08996 * 113.61178 * 25.34487 * 8 6 5 35 35 H 1.09007 * 109.47036 * 32.41747 * 11 9 8 36 36 H 1.08994 * 109.47734 * 152.42153 * 11 9 8 37 37 H 1.09004 * 109.46456 * 314.99603 * 15 14 13 38 38 H 0.96700 * 114.00033 * 180.02562 * 16 15 14 39 39 H 1.48504 * 109.99652 * 178.67889 * 17 15 14 40 40 H 1.48491 * 109.99993 * 299.99317 * 17 15 14 41 41 H 1.08002 * 119.97469 * 180.25173 * 18 14 13 42 42 H 1.08000 * 119.97158 * 180.02562 * 21 19 18 43 43 H 1.08004 * 120.02502 * 179.97438 * 22 21 19 44 44 H 1.09002 * 113.61445 * 334.56823 * 23 6 5 45 45 H 1.09002 * 113.61408 * 105.38554 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5846 -2.0356 1.2643 7 1 0.7241 -2.2595 0.6339 8 6 2.7333 -3.0480 1.1210 9 6 2.0549 -3.8572 2.2427 10 1 1.3227 -4.5782 1.8793 11 6 3.0388 -4.4619 3.2461 12 8 3.4721 -5.7403 2.7770 13 6 4.3551 -6.4173 3.5577 14 6 4.8129 -7.6664 3.1657 15 6 4.3314 -8.2748 1.8738 16 8 4.9707 -7.6247 0.7736 17 14 4.7476 -10.0906 1.8493 18 6 5.7146 -8.3505 3.9581 19 6 6.1523 -7.7953 5.1471 20 35 7.3809 -8.7371 6.2331 21 6 5.6927 -6.5516 5.5424 22 6 4.7953 -5.8621 4.7506 23 6 1.4332 -2.5313 2.7122 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6765 -1.7489 -1.2494 31 1 1.6766 -0.2073 -2.1393 32 1 3.1299 -0.7209 -1.2496 33 1 2.7461 -3.5605 0.1591 34 1 3.7072 -2.6454 1.3991 35 1 3.9006 -3.8028 3.3523 36 1 2.5479 -4.5767 4.2124 37 1 3.2517 -8.1485 1.7931 38 1 4.7072 -7.9658 -0.0920 39 1 4.2497 -10.7089 0.5943 40 1 6.2168 -10.2763 1.9588 41 1 6.0745 -9.3215 3.6512 42 1 6.0359 -6.1197 6.4709 43 1 4.4365 -4.8915 5.0599 44 1 2.0515 -1.9879 3.4266 45 1 0.3964 -2.6254 3.0353 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26869_14598384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:42:11 Heat of formation + Delta-G solvation = -55.535154 kcal Electronic energy + Delta-G solvation = -25769.236391 eV Core-core repulsion = 21994.250013 eV Total energy + Delta-G solvation = -3774.986378 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.082 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.61929 -40.80835 -39.07093 -37.94937 -37.73229 -33.95202 -33.28055 -32.66963 -30.29557 -29.10354 -28.37010 -28.26034 -26.86754 -26.61057 -24.47947 -22.82265 -22.41892 -20.83901 -20.59866 -19.26264 -18.60585 -17.91960 -17.44643 -17.02038 -16.82148 -16.56804 -15.99880 -15.83859 -15.70089 -15.40404 -15.13068 -14.64166 -14.51278 -14.37146 -14.07412 -13.96782 -13.50178 -13.44603 -13.33155 -13.11471 -13.03409 -12.92181 -12.81790 -12.70484 -12.67091 -12.26540 -12.11690 -11.93162 -11.84339 -11.69528 -11.49393 -11.29883 -11.29559 -11.13822 -10.48250 -10.37099 -10.21055 -9.23276 -4.98486 -0.00036 0.02752 0.60377 1.23487 1.53330 1.87154 2.00753 2.34807 2.74013 3.30661 3.44695 3.55082 3.62455 3.67829 3.76138 3.80891 3.89578 3.96981 3.99718 4.01907 4.08156 4.11976 4.22017 4.24776 4.40364 4.41513 4.52217 4.60430 4.63810 4.66387 4.76416 4.77240 4.77903 4.83778 4.89764 4.91599 4.92742 5.00987 5.02536 5.08513 5.11243 5.16065 5.30032 5.31436 5.36614 5.43879 6.24342 6.40856 6.57884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.098 3.902 3 C -0.140 4.140 4 C -0.174 4.174 5 O -0.381 6.381 6 C 0.059 3.941 7 H 0.100 0.900 8 C -0.149 4.149 9 C -0.100 4.100 10 H 0.109 0.891 11 C 0.065 3.935 12 O -0.310 6.310 13 C 0.162 3.838 14 C -0.118 4.118 15 C -0.070 4.070 16 O -0.553 6.553 17 Si 0.753 3.247 18 C -0.058 4.058 19 C -0.138 4.138 20 Br -0.048 7.048 21 C -0.043 4.043 22 C -0.204 4.204 23 C -0.120 4.120 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.392 0.608 39 H -0.278 1.278 40 H -0.291 1.291 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.160 0.840 44 H 0.091 0.909 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 1.095 0.061 5.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.060 3.940 3 C -0.197 4.197 4 C -0.231 4.231 5 O -0.301 6.301 6 C 0.001 3.999 7 H 0.118 0.882 8 C -0.187 4.187 9 C -0.119 4.119 10 H 0.127 0.873 11 C -0.010 4.010 12 O -0.223 6.223 13 C 0.115 3.885 14 C -0.120 4.120 15 C -0.178 4.178 16 O -0.363 6.363 17 Si 0.658 3.342 18 C -0.078 4.078 19 C -0.217 4.217 20 Br 0.037 6.963 21 C -0.063 4.063 22 C -0.224 4.224 23 C -0.158 4.158 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.242 0.758 39 H -0.204 1.204 40 H -0.218 1.218 41 H 0.162 0.838 42 H 0.173 0.827 43 H 0.178 0.822 44 H 0.109 0.891 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.252 0.499 0.480 4.308 hybrid contribution -0.010 0.741 -1.461 1.638 sum -4.262 1.240 -0.981 4.545 Atomic orbital electron populations 1.22444 0.94805 1.02810 1.03300 1.21665 0.93791 0.93273 0.85300 1.21794 1.01551 0.93290 1.03057 1.22446 1.01675 1.00960 0.98050 1.88009 1.74290 1.24222 1.43585 1.23676 0.97066 0.81124 0.97992 0.88216 1.23624 0.98983 0.96823 0.99247 1.22294 0.97699 0.95826 0.96057 0.87311 1.23045 0.97778 0.81577 0.98593 1.86124 1.56871 1.32504 1.46759 1.19011 0.89023 0.90823 0.89679 1.18724 1.01539 0.94374 0.97374 1.24756 0.99981 1.08085 0.85024 1.86568 1.69901 1.62463 1.17343 0.94258 0.79841 0.74000 0.86114 1.20981 0.94206 0.99986 0.92610 1.21669 1.03600 0.98447 0.97994 1.96750 1.57717 1.75152 1.66689 1.21204 0.93761 0.91635 0.99664 1.21536 1.02621 1.03055 0.95143 1.23191 1.02459 0.93671 0.96457 0.92013 0.90482 0.91784 0.92543 0.89785 0.92134 0.92145 0.90586 0.92674 0.91409 0.90438 0.91415 0.89752 0.89353 0.75759 1.20405 1.21809 0.83805 0.82674 0.82243 0.89067 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.37 8.38 71.98 0.60 0.98 16 2 C 0.10 0.03 1.11 -10.80 -0.01 0.02 16 3 C -0.14 0.04 8.84 71.98 0.64 0.68 16 4 C -0.17 0.13 8.38 71.98 0.60 0.73 16 5 O -0.38 -1.33 10.00 -148.98 -1.49 -2.82 16 6 C 0.06 -0.04 2.82 31.12 0.09 0.05 16 7 H 0.10 -0.26 5.55 -2.39 -0.01 -0.27 16 8 C -0.15 -0.03 7.47 31.21 0.23 0.21 16 9 C -0.10 0.26 4.02 -10.18 -0.04 0.22 16 10 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 11 C 0.06 -0.12 4.58 71.98 0.33 0.21 16 12 O -0.31 -1.05 9.47 -92.62 -0.88 -1.93 16 13 C 0.16 0.66 6.66 22.50 0.15 0.81 16 14 C -0.12 -0.56 5.30 -19.77 -0.10 -0.67 16 15 C -0.07 -0.16 2.37 71.24 0.17 0.01 16 16 O -0.55 -2.76 12.86 -148.98 -1.92 -4.68 16 17 Si 0.75 0.00 30.21 68.60 2.07 2.07 16 18 C -0.06 -0.26 8.39 22.27 0.19 -0.07 16 19 C -0.14 -0.52 6.22 22.32 0.14 -0.38 16 20 Br -0.05 -0.17 33.70 -20.37 -0.69 -0.86 16 21 C -0.04 -0.05 9.78 22.27 0.22 0.17 16 22 C -0.20 -0.17 9.04 22.36 0.20 0.03 16 23 C -0.12 0.38 7.46 31.12 0.23 0.61 16 24 H 0.06 -0.07 8.14 -2.38 -0.02 -0.09 16 25 H 0.08 -0.30 8.14 -2.38 -0.02 -0.32 16 26 H 0.06 -0.20 6.25 -2.39 -0.01 -0.21 16 27 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 30 H 0.06 -0.07 7.02 -2.39 -0.02 -0.09 16 31 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.07 0.05 8.14 -2.38 -0.02 0.04 16 34 H 0.08 0.22 7.91 -2.39 -0.02 0.20 16 35 H 0.07 -0.13 7.38 -2.38 -0.02 -0.14 16 36 H 0.08 -0.43 7.66 -2.39 -0.02 -0.45 16 37 H 0.09 -0.02 7.83 -2.38 -0.02 -0.04 16 38 H 0.39 -1.22 8.74 -74.06 -0.65 -1.86 16 39 H -0.28 -0.89 7.11 99.48 0.71 -0.18 16 40 H -0.29 -1.85 6.74 99.48 0.67 -1.18 16 41 H 0.14 0.44 4.90 -2.91 -0.01 0.43 16 42 H 0.16 -0.43 8.06 -2.91 -0.02 -0.45 16 43 H 0.16 -0.64 6.30 -2.91 -0.02 -0.66 16 44 H 0.09 -0.22 8.10 -2.39 -0.02 -0.24 16 45 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 Total: 0.00 -12.53 378.02 1.08 -11.45 By element: Atomic # 1 Polarization: -7.18 SS G_CDS: 0.34 Total: -6.84 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 3.63 Total: 3.61 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -4.28 Total: -9.43 kcal Atomic # 14 Polarization: 0.00 SS G_CDS: 2.07 Total: 2.07 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -0.69 Total: -0.86 kcal Total: -12.53 1.08 -11.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26869_14598384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.086 kcal (2) G-P(sol) polarization free energy of solvation -12.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds