Wall clock time and date at job start Tue Mar 9 2021 16:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42898 * 109.47258 * 2 1 4 4 C 1.35896 * 116.99814 * 180.02562 * 3 2 1 5 5 C 1.38618 * 120.02463 * 180.27683 * 4 3 2 6 6 C 1.38656 * 119.88753 * 180.24772 * 5 4 3 7 7 O 1.35896 * 120.02815 * 179.74691 * 6 5 4 8 8 C 1.42907 * 116.99686 * 359.72909 * 7 6 5 9 9 C 1.53003 * 109.46727 * 180.02562 * 8 7 6 10 10 H 1.09006 * 112.85187 * 316.19274 * 9 8 7 11 11 C 1.53779 * 113.69268 * 87.46314 * 9 8 7 12 12 C 1.53784 * 87.08045 * 139.99100 * 11 9 8 13 13 H 1.08994 * 113.61477 * 89.11454 * 12 11 9 14 14 O 1.42895 * 113.61275 * 220.02177 * 12 11 9 15 15 C 1.42904 * 113.99895 * 247.49456 * 14 12 11 16 16 C 1.53001 * 109.46790 * 60.00170 * 15 14 12 17 17 C 1.53003 * 109.46994 * 179.97438 * 15 14 12 18 18 C 1.52997 * 109.47087 * 300.00297 * 15 14 12 19 19 C 1.53779 * 113.61005 * 185.00075 * 9 8 7 20 20 C 1.38748 * 119.94418 * 359.47621 * 6 5 4 21 21 C 1.50702 * 119.97299 * 180.22819 * 20 6 5 22 22 O 1.42901 * 109.47465 * 74.99809 * 21 20 6 23 23 Si 1.86305 * 109.47320 * 194.99845 * 21 20 6 24 24 C 1.38197 * 120.05886 * 0.24884 * 20 6 5 25 25 C 1.38161 * 120.10528 * 0.02611 * 24 20 6 26 26 H 1.08992 * 109.47194 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47102 * 300.00182 * 1 2 3 28 28 H 1.09005 * 109.46790 * 59.99847 * 1 2 3 29 29 H 1.09001 * 109.47102 * 239.99818 * 2 1 3 30 30 H 1.09005 * 109.46790 * 120.00153 * 2 1 3 31 31 H 1.07999 * 120.05763 * 359.97438 * 5 4 3 32 32 H 1.08996 * 109.47338 * 59.99883 * 8 7 6 33 33 H 1.08996 * 109.46719 * 299.99478 * 8 7 6 34 34 H 1.09002 * 113.61557 * 25.44212 * 11 9 8 35 35 H 1.09004 * 113.61501 * 254.53633 * 11 9 8 36 36 H 1.08998 * 109.47657 * 60.00349 * 16 15 14 37 37 H 1.09010 * 109.46818 * 179.97438 * 16 15 14 38 38 H 1.08997 * 109.47442 * 299.99761 * 16 15 14 39 39 H 1.08998 * 109.47375 * 60.00483 * 17 15 14 40 40 H 1.09006 * 109.46932 * 180.02562 * 17 15 14 41 41 H 1.08998 * 109.47388 * 299.99612 * 17 15 14 42 42 H 1.08997 * 109.47278 * 60.00157 * 18 15 14 43 43 H 1.09001 * 109.47226 * 180.02562 * 18 15 14 44 44 H 1.08998 * 109.47119 * 299.99418 * 18 15 14 45 45 H 1.08997 * 113.61646 * 105.38661 * 19 9 8 46 46 H 1.09000 * 113.61527 * 334.47932 * 19 9 8 47 47 H 1.09003 * 109.47003 * 314.99592 * 21 20 6 48 48 H 0.96704 * 113.99451 * 60.00037 * 22 21 20 49 49 H 1.48495 * 110.00007 * 179.97438 * 23 21 20 50 50 H 1.48493 * 110.00196 * 301.32078 * 23 21 20 51 51 H 1.08001 * 119.94948 * 180.02562 * 24 20 6 52 52 H 1.07998 * 119.96798 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 3.8841 2.8059 0.0052 6 6 5.2592 2.9842 -0.0005 7 8 5.7823 4.2385 -0.0001 8 6 4.8567 5.3273 0.0004 9 6 5.6256 6.6501 0.0002 10 1 6.4654 6.6517 0.6952 11 6 5.9894 7.1532 -1.4067 12 6 5.6415 8.5651 -0.9062 13 1 6.4855 9.0901 -0.4591 14 8 4.9400 9.3564 -1.8673 15 6 5.6886 10.4685 -2.3621 16 6 6.9651 9.9638 -3.0380 17 6 4.8444 11.2396 -3.3789 18 6 6.0580 11.3923 -1.1999 19 6 4.7216 7.8880 0.1236 20 6 6.1006 1.8810 -0.0011 21 6 7.5952 2.0741 -0.0021 22 8 8.0240 2.4811 1.2989 23 14 8.4282 0.4710 -0.4572 24 6 5.5694 0.6052 -0.0011 25 6 4.1996 0.4249 -0.0011 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.2275 3.6633 0.0097 32 1 4.2300 5.2711 0.8904 33 1 4.2299 5.2717 -0.8895 34 1 5.3208 6.7894 -2.1869 35 1 7.0426 7.0259 -1.6571 36 1 6.7020 9.3057 -3.8661 37 1 7.5359 10.8122 -3.4159 38 1 7.5667 9.4142 -2.3141 39 1 3.9348 11.5992 -2.8978 40 1 5.4156 12.0877 -3.7567 41 1 4.5817 10.5813 -4.2069 42 1 6.6596 10.8427 -0.4759 43 1 6.6286 12.2409 -1.5773 44 1 5.1486 11.7519 -0.7184 45 1 4.7514 8.3540 1.1085 46 1 3.7064 7.7251 -0.2383 47 1 7.8619 2.8413 -0.7291 48 1 7.8190 1.8446 1.9975 49 1 9.9026 0.6483 -0.4624 50 1 8.0473 -0.5912 0.5080 51 1 6.2260 -0.2522 -0.0011 52 1 3.7868 -0.5731 -0.0006 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26952_14598384.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:51:34 Heat of formation + Delta-G solvation = -101.600181 kcal Electronic energy + Delta-G solvation = -29854.623862 eV Core-core repulsion = 25787.700528 eV Total energy + Delta-G solvation = -4066.923335 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.202 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.77298 -40.95302 -40.07710 -38.76811 -37.94133 -37.03891 -33.92338 -33.14837 -31.41150 -31.30176 -29.38947 -28.36796 -28.27502 -26.65561 -26.32106 -24.95891 -24.17255 -22.63985 -22.24197 -20.83400 -20.66603 -19.84942 -18.38839 -17.94672 -17.52834 -17.34537 -17.25418 -16.91621 -16.67491 -16.36143 -16.03529 -15.94570 -15.61083 -15.29935 -15.13074 -14.57040 -14.51216 -14.39835 -14.18530 -14.07171 -13.65051 -13.47500 -13.38537 -13.33784 -13.23450 -13.11880 -12.91945 -12.88267 -12.77399 -12.65814 -12.39558 -12.22097 -12.21529 -12.01553 -11.88844 -11.73416 -11.59088 -11.56095 -11.34544 -11.19067 -10.50892 -10.37838 -9.69879 -9.09296 -4.90558 0.18902 0.31785 1.33465 1.58114 1.95550 1.97984 2.21166 2.56115 2.73576 3.43924 3.49498 3.54306 3.66462 3.74707 3.78153 3.80412 3.90084 3.96318 4.01503 4.04046 4.05968 4.06833 4.10180 4.19843 4.20262 4.32432 4.36157 4.37638 4.44924 4.54894 4.60923 4.66340 4.67254 4.75253 4.75957 4.77564 4.83638 4.85352 4.90340 4.91454 4.92788 4.98974 5.02085 5.11046 5.15056 5.17867 5.25237 5.28569 5.29952 5.32089 5.36982 5.52402 6.23752 6.39016 6.40703 6.56213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.045 3.955 3 O -0.332 6.332 4 C 0.166 3.834 5 C -0.260 4.260 6 C 0.182 3.818 7 O -0.310 6.310 8 C 0.069 3.931 9 C -0.103 4.103 10 H 0.103 0.897 11 C -0.146 4.146 12 C 0.062 3.938 13 H 0.100 0.900 14 O -0.380 6.380 15 C 0.098 3.902 16 C -0.174 4.174 17 C -0.139 4.139 18 C -0.177 4.177 19 C -0.122 4.122 20 C -0.197 4.197 21 C -0.071 4.071 22 O -0.548 6.548 23 Si 0.773 3.227 24 C -0.041 4.041 25 C -0.241 4.241 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.106 0.894 48 H 0.382 0.618 49 H -0.303 1.303 50 H -0.268 1.268 51 H 0.156 0.844 52 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 -2.113 -1.380 3.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 O -0.246 6.246 4 C 0.119 3.881 5 C -0.279 4.279 6 C 0.135 3.865 7 O -0.223 6.223 8 C -0.006 4.006 9 C -0.121 4.121 10 H 0.121 0.879 11 C -0.183 4.183 12 C 0.004 3.996 13 H 0.117 0.883 14 O -0.300 6.300 15 C 0.059 3.941 16 C -0.231 4.231 17 C -0.196 4.196 18 C -0.234 4.234 19 C -0.160 4.160 20 C -0.198 4.198 21 C -0.179 4.179 22 O -0.355 6.355 23 Si 0.677 3.323 24 C -0.059 4.059 25 C -0.260 4.260 26 H 0.118 0.882 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.155 0.845 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.124 0.876 48 H 0.231 0.769 49 H -0.232 1.232 50 H -0.194 1.194 51 H 0.174 0.826 52 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.053 -2.027 -1.531 2.750 hybrid contribution -0.200 0.292 1.301 1.349 sum -1.252 -1.735 -0.229 2.152 Atomic orbital electron populations 1.21827 0.91914 1.04178 1.03057 1.23116 0.96586 0.80391 1.02808 1.86067 1.18778 1.31818 1.87935 1.18841 0.82813 0.93629 0.92784 1.20543 0.94031 0.96996 1.16334 1.18584 0.90424 0.84899 0.92577 1.86149 1.36417 1.12101 1.87606 1.22940 0.91553 0.84079 1.02013 1.22247 0.99699 0.91264 0.98919 0.87903 1.23573 1.02149 0.96134 0.96491 1.23633 0.95840 0.90057 0.90081 0.88267 1.88011 1.42152 1.40953 1.58877 1.21685 0.92000 0.86350 0.94058 1.22445 0.97227 1.02234 1.01214 1.21793 1.00096 0.99861 0.97877 1.22449 1.02321 1.00266 0.98389 1.23204 0.99149 0.93996 0.99645 1.19628 0.96095 0.91376 1.12682 1.25072 0.92597 1.12675 0.87522 1.86598 1.82346 1.49221 1.17368 0.94058 0.76097 0.73225 0.88880 1.20973 0.95142 0.95758 0.94008 1.21354 0.93761 0.98915 1.11952 0.88224 0.92121 0.91957 0.90373 0.90734 0.84499 0.91244 0.91309 0.89899 0.90997 0.92401 0.90535 0.92233 0.92239 0.89717 0.92379 0.91947 0.90381 0.92116 0.89492 0.89126 0.87578 0.76950 1.23168 1.19382 0.82640 0.82759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.57 10.28 71.98 0.74 1.31 16 2 C 0.05 -0.09 5.46 71.98 0.39 0.30 16 3 O -0.33 -1.60 10.13 -92.38 -0.94 -2.53 16 4 C 0.17 0.83 6.68 22.49 0.15 0.98 16 5 C -0.26 -1.63 8.97 22.46 0.20 -1.43 16 6 C 0.18 1.23 6.66 22.49 0.15 1.38 16 7 O -0.31 -2.27 9.46 -92.38 -0.87 -3.14 16 8 C 0.07 0.19 4.58 71.98 0.33 0.52 16 9 C -0.10 -0.12 4.01 -10.27 -0.04 -0.17 16 10 H 0.10 0.18 8.14 -2.38 -0.02 0.16 16 11 C -0.15 -0.28 7.47 31.12 0.23 -0.05 16 12 C 0.06 0.09 2.82 31.12 0.09 0.18 16 13 H 0.10 -0.03 5.55 -2.39 -0.01 -0.04 16 14 O -0.38 -1.86 10.00 -148.98 -1.49 -3.35 16 15 C 0.10 0.14 1.11 -10.79 -0.01 0.12 16 16 C -0.17 0.01 8.38 71.98 0.60 0.61 16 17 C -0.14 -0.05 8.84 71.98 0.64 0.58 16 18 C -0.18 0.13 8.38 71.98 0.60 0.73 16 19 C -0.12 -0.02 7.47 31.12 0.23 0.21 16 20 C -0.20 -0.81 5.27 -19.75 -0.10 -0.92 16 21 C -0.07 -0.25 2.37 71.24 0.17 -0.08 16 22 O -0.55 -3.62 12.88 -148.98 -1.92 -5.54 16 23 Si 0.77 -0.52 30.24 68.60 2.07 1.56 16 24 C -0.04 -0.03 8.65 22.24 0.19 0.17 16 25 C -0.24 -0.27 9.04 22.38 0.20 -0.07 16 26 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 27 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.06 -0.15 8.14 -2.38 -0.02 -0.17 16 29 H 0.08 -0.37 7.66 -2.39 -0.02 -0.39 16 30 H 0.07 -0.32 7.66 -2.38 -0.02 -0.34 16 31 H 0.14 0.70 6.30 -2.91 -0.02 0.68 16 32 H 0.07 0.12 7.65 -2.39 -0.02 0.10 16 33 H 0.07 0.15 7.38 -2.39 -0.02 0.13 16 34 H 0.08 0.30 7.90 -2.39 -0.02 0.28 16 35 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.08 -0.17 8.14 -2.38 -0.02 -0.19 16 38 H 0.06 -0.01 7.02 -2.39 -0.02 -0.03 16 39 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 41 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.06 -0.08 6.25 -2.39 -0.01 -0.10 16 43 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.09 0.09 8.10 -2.39 -0.02 0.07 16 47 H 0.11 0.51 7.82 -2.39 -0.02 0.49 16 48 H 0.38 0.09 8.70 -74.05 -0.64 -0.55 16 49 H -0.30 -2.14 7.11 99.48 0.71 -1.43 16 50 H -0.27 -0.14 6.68 99.48 0.66 0.53 16 51 H 0.16 -0.61 4.85 -2.91 -0.01 -0.62 16 52 H 0.15 -0.62 6.29 -2.91 -0.02 -0.63 16 Total: 0.00 -13.79 407.93 1.87 -11.92 By element: Atomic # 1 Polarization: -3.56 SS G_CDS: 0.25 Total: -3.31 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 4.77 Total: 4.39 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -5.22 Total: -14.56 kcal Atomic # 14 Polarization: -0.52 SS G_CDS: 2.07 Total: 1.56 kcal Total: -13.79 1.87 -11.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26952_14598384.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.678 kcal (2) G-P(sol) polarization free energy of solvation -13.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds