Wall clock time and date at job start Tue Mar 9 2021 16:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47432 * 2 1 4 4 C 1.35896 * 117.00577 * 180.02562 * 3 2 1 5 5 C 1.38610 * 120.03225 * 180.02562 * 4 3 2 6 6 C 1.38656 * 119.89306 * 180.02562 * 5 4 3 7 7 O 1.35896 * 120.02625 * 179.97438 * 6 5 4 8 8 C 1.42905 * 117.00039 * 359.97438 * 7 6 5 9 9 C 1.52999 * 109.46728 * 179.97438 * 8 7 6 10 10 H 1.09000 * 112.85372 * 45.34232 * 9 8 7 11 11 C 1.53786 * 113.61110 * 176.52933 * 9 8 7 12 12 C 1.53783 * 87.07901 * 139.98056 * 11 9 8 13 13 H 1.09003 * 113.61480 * 220.01622 * 12 11 9 14 14 N 1.46502 * 113.60979 * 89.20468 * 12 11 9 15 15 C 1.34778 * 119.99881 * 155.00386 * 14 12 11 16 16 O 1.21507 * 120.00147 * 359.97438 * 15 14 12 17 17 O 1.34640 * 119.99875 * 179.97438 * 15 14 12 18 18 C 1.45204 * 117.00024 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47082 * 59.99679 * 18 17 15 20 20 C 1.52997 * 109.47249 * 179.97438 * 18 17 15 21 21 C 1.52998 * 109.46659 * 299.99789 * 18 17 15 22 22 C 1.53782 * 113.61793 * 274.13457 * 9 8 7 23 23 C 1.38747 * 119.94572 * 0.25570 * 6 5 4 24 24 C 1.50693 * 119.97552 * 179.74474 * 23 6 5 25 25 O 1.42909 * 109.47003 * 74.99787 * 24 23 6 26 26 Si 1.86295 * 109.47362 * 194.99813 * 24 23 6 27 27 C 1.38208 * 120.05226 * 359.49040 * 23 6 5 28 28 C 1.38149 * 120.10796 * 0.50818 * 27 23 6 29 29 H 1.09006 * 109.47148 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46999 * 299.99872 * 1 2 3 31 31 H 1.08996 * 109.47145 * 59.99773 * 1 2 3 32 32 H 1.09006 * 109.46842 * 240.00406 * 2 1 3 33 33 H 1.09002 * 109.47394 * 120.00600 * 2 1 3 34 34 H 1.08006 * 120.05033 * 0.04724 * 5 4 3 35 35 H 1.09000 * 109.47187 * 300.00222 * 8 7 6 36 36 H 1.09001 * 109.46558 * 60.00270 * 8 7 6 37 37 H 1.08995 * 113.61582 * 254.52816 * 11 9 8 38 38 H 1.09004 * 113.61376 * 25.43330 * 11 9 8 39 39 H 0.97001 * 120.00339 * 334.99377 * 14 12 11 40 40 H 1.09004 * 109.47068 * 60.00179 * 19 18 17 41 41 H 1.09004 * 109.46851 * 180.02562 * 19 18 17 42 42 H 1.08997 * 109.46973 * 300.00210 * 19 18 17 43 43 H 1.09002 * 109.46913 * 59.99701 * 20 18 17 44 44 H 1.09004 * 109.47166 * 179.97438 * 20 18 17 45 45 H 1.08995 * 109.47292 * 300.00069 * 20 18 17 46 46 H 1.09002 * 109.47353 * 60.00299 * 21 18 17 47 47 H 1.09004 * 109.46973 * 180.02562 * 21 18 17 48 48 H 1.08993 * 109.47372 * 299.99523 * 21 18 17 49 49 H 1.08997 * 113.61242 * 334.57563 * 22 9 8 50 50 H 1.08998 * 113.61192 * 105.47295 * 22 9 8 51 51 H 1.08994 * 109.47220 * 315.00099 * 24 23 6 52 52 H 0.96701 * 113.99587 * 60.00589 * 25 24 23 53 53 H 1.48504 * 110.00196 * 180.02562 * 26 24 23 54 54 H 1.48502 * 110.00120 * 301.32029 * 26 24 23 55 55 H 1.07996 * 119.94280 * 180.25941 * 27 23 6 56 56 H 1.08004 * 119.97218 * 179.72614 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 3.8840 2.8059 0.0000 6 6 5.2591 2.9843 -0.0011 7 8 5.7821 4.2386 -0.0012 8 6 4.8565 5.3275 -0.0006 9 6 5.6254 6.6502 -0.0001 10 1 6.4484 6.6618 -0.7146 11 6 4.7189 7.8896 -0.0848 12 6 5.6616 8.5515 0.9341 13 1 5.1431 9.1441 1.6879 14 7 6.7812 9.2681 0.3183 15 6 7.3787 10.2797 0.9787 16 8 6.9885 10.5977 2.0846 17 8 8.4079 10.9380 0.4129 18 6 9.0028 12.0168 1.1815 19 6 9.5440 11.4643 2.5016 20 6 10.1487 12.6407 0.3824 21 6 7.9429 13.0816 1.4705 22 6 6.0229 7.1312 1.4054 23 6 6.1006 1.8812 -0.0081 24 6 7.5951 2.0743 -0.0151 25 8 8.0293 2.4780 1.2852 26 14 8.4261 0.4725 -0.4778 27 6 5.5693 0.6053 -0.0033 28 6 4.1996 0.4250 -0.0022 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.2273 3.6634 0.0016 35 1 4.2293 5.2716 -0.8903 36 1 4.2302 5.2713 0.8897 37 1 4.7265 8.3702 -1.0631 38 1 3.7120 7.7211 0.2973 39 1 7.0925 9.0145 -0.5647 40 1 10.2991 10.7056 2.2957 41 1 9.9901 12.2742 3.0788 42 1 8.7279 11.0195 3.0711 43 1 9.7635 13.0342 -0.5583 44 1 10.5949 13.4509 0.9592 45 1 10.9036 11.8819 0.1768 46 1 7.1268 12.6368 2.0401 47 1 8.3895 13.8917 2.0472 48 1 7.5574 13.4753 0.5301 49 1 5.3733 6.7549 2.1956 50 1 7.0818 7.0003 1.6284 51 1 7.8587 2.8433 -0.7411 52 1 7.8274 1.8398 1.9830 53 1 9.9006 0.6496 -0.4877 54 1 8.0494 -0.5922 0.4865 55 1 6.2260 -0.2521 -0.0045 56 1 3.7868 -0.5730 -0.0029 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26952_15734082.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:52:38 Heat of formation + Delta-G solvation = -133.502003 kcal Electronic energy + Delta-G solvation = -35445.115326 eV Core-core repulsion = 30708.936762 eV Total energy + Delta-G solvation = -4736.178564 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.212 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.01974 -41.69456 -40.62830 -39.87227 -38.45194 -37.83854 -37.05377 -35.39881 -34.13425 -33.13228 -31.38774 -31.26620 -29.29894 -28.40437 -28.33367 -26.77487 -26.31679 -25.18038 -24.56148 -23.55859 -22.51224 -22.21371 -21.19965 -20.38186 -19.82166 -19.36108 -18.37373 -17.75705 -17.61075 -17.33851 -17.29099 -17.18379 -16.89896 -16.62178 -16.42589 -16.08194 -15.85253 -15.58214 -15.42555 -15.19515 -15.01702 -14.82871 -14.45354 -14.44254 -14.26195 -13.94469 -13.68931 -13.57975 -13.43852 -13.37782 -13.20921 -13.17882 -12.95927 -12.90579 -12.88313 -12.84350 -12.53845 -12.36722 -12.22415 -12.10386 -12.08904 -11.84722 -11.69767 -11.58611 -11.53337 -11.43501 -11.21320 -11.16070 -10.50806 -10.23194 -9.67108 -9.07178 -4.91439 0.20955 0.34015 1.08830 1.33442 1.57569 1.67726 1.95932 2.01662 2.25256 2.58216 3.06834 3.37029 3.47468 3.50737 3.67032 3.70616 3.73025 3.77329 3.80382 3.82113 3.90897 4.04206 4.05191 4.08056 4.19628 4.21108 4.30976 4.36857 4.38810 4.43206 4.44136 4.52742 4.57643 4.58216 4.66985 4.70405 4.71769 4.72976 4.79498 4.84291 4.85659 4.86745 4.92871 4.96281 5.00232 5.03142 5.04441 5.13888 5.19466 5.23591 5.27232 5.28565 5.30662 5.43520 5.53517 5.57797 6.26852 6.33114 6.42346 6.55357 7.28365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.046 3.954 3 O -0.331 6.331 4 C 0.165 3.835 5 C -0.257 4.257 6 C 0.184 3.816 7 O -0.312 6.312 8 C 0.062 3.938 9 C -0.102 4.102 10 H 0.102 0.898 11 C -0.116 4.116 12 C 0.132 3.868 13 H 0.097 0.903 14 N -0.684 5.684 15 C 0.646 3.354 16 O -0.593 6.593 17 O -0.369 6.369 18 C 0.127 3.873 19 C -0.181 4.181 20 C -0.137 4.137 21 C -0.179 4.179 22 C -0.146 4.146 23 C -0.198 4.198 24 C -0.070 4.070 25 O -0.548 6.548 26 Si 0.773 3.227 27 C -0.043 4.043 28 C -0.243 4.243 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.143 0.857 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.417 0.583 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.087 0.913 48 H 0.063 0.937 49 H 0.098 0.902 50 H 0.056 0.944 51 H 0.108 0.892 52 H 0.381 0.619 53 H -0.305 1.305 54 H -0.270 1.270 55 H 0.154 0.846 56 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 -3.419 -4.590 6.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 O -0.245 6.245 4 C 0.119 3.881 5 C -0.276 4.276 6 C 0.137 3.863 7 O -0.225 6.225 8 C -0.012 4.012 9 C -0.120 4.120 10 H 0.120 0.880 11 C -0.154 4.154 12 C 0.027 3.973 13 H 0.115 0.885 14 N -0.343 5.343 15 C 0.400 3.600 16 O -0.483 6.483 17 O -0.284 6.284 18 C 0.090 3.910 19 C -0.238 4.238 20 C -0.194 4.194 21 C -0.236 4.236 22 C -0.185 4.185 23 C -0.199 4.199 24 C -0.178 4.178 25 O -0.356 6.356 26 Si 0.678 3.322 27 C -0.060 4.060 28 C -0.262 4.262 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.160 0.840 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.137 0.863 39 H 0.254 0.746 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.118 0.882 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.106 0.894 48 H 0.082 0.918 49 H 0.116 0.884 50 H 0.075 0.925 51 H 0.126 0.874 52 H 0.230 0.770 53 H -0.234 1.234 54 H -0.196 1.196 55 H 0.171 0.829 56 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.565 -3.069 -4.131 5.750 hybrid contribution -0.138 0.047 1.155 1.164 sum -2.703 -3.021 -2.976 5.029 Atomic orbital electron populations 1.21822 0.91888 1.04146 1.03100 1.23099 0.96592 0.80452 1.02726 1.86062 1.18766 1.31701 1.87936 1.18854 0.82768 0.93697 0.92769 1.20551 0.93954 0.96992 1.16141 1.18552 0.90408 0.84901 0.92454 1.86161 1.36606 1.12113 1.87576 1.23065 0.91669 0.83942 1.02545 1.22592 0.99528 0.91738 0.98172 0.88002 1.23310 0.98620 0.93130 1.00340 1.21873 0.86460 0.91928 0.97014 0.88523 1.44374 1.35107 1.33062 1.21772 1.18313 0.79035 0.79913 0.82781 1.90902 1.67322 1.69309 1.20810 1.86313 1.45233 1.47492 1.49357 1.22375 0.93425 0.83787 0.91372 1.22478 1.01807 1.02638 0.96852 1.21892 0.95509 1.01276 1.00765 1.22468 0.99581 0.98723 1.02875 1.23559 1.02019 0.95371 0.97526 1.19606 0.96001 0.91477 1.12795 1.25047 0.92687 1.12525 0.87508 1.86609 1.82307 1.49131 1.17536 0.94119 0.76084 0.73254 0.88782 1.20956 0.95152 0.95783 0.94118 1.21345 0.93775 0.98961 1.12092 0.88333 0.92107 0.91856 0.90419 0.90896 0.83978 0.90281 0.91137 0.88572 0.86345 0.74642 0.92154 0.89331 0.91888 0.91034 0.88221 0.91302 0.91801 0.89395 0.91785 0.88389 0.92524 0.87445 0.77027 1.23364 1.19640 0.82892 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.71 10.28 71.98 0.74 1.45 16 2 C 0.05 -0.14 5.46 71.98 0.39 0.26 16 3 O -0.33 -1.11 10.13 -92.38 -0.94 -2.05 16 4 C 0.17 0.59 6.68 22.49 0.15 0.74 16 5 C -0.26 -1.04 8.97 22.46 0.20 -0.83 16 6 C 0.18 0.90 6.66 22.49 0.15 1.05 16 7 O -0.31 -1.54 9.46 -92.39 -0.87 -2.42 16 8 C 0.06 -0.07 4.57 71.98 0.33 0.26 16 9 C -0.10 0.28 3.88 -10.27 -0.04 0.24 16 10 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 11 C -0.12 0.67 7.39 31.12 0.23 0.90 16 12 C 0.13 0.01 4.33 45.57 0.20 0.21 16 13 H 0.10 0.32 7.46 -2.39 -0.02 0.30 16 14 N -0.68 -1.39 5.27 -567.33 -2.99 -4.37 16 15 C 0.65 5.39 8.06 129.79 1.05 6.44 16 16 O -0.59 -8.08 11.48 19.82 0.23 -7.86 16 17 O -0.37 -2.59 9.94 -55.49 -0.55 -3.14 16 18 C 0.13 0.54 1.13 -10.80 -0.01 0.53 16 19 C -0.18 -0.90 8.37 71.98 0.60 -0.29 16 20 C -0.14 0.14 8.85 71.98 0.64 0.78 16 21 C -0.18 -0.74 8.37 71.98 0.60 -0.13 16 22 C -0.15 -0.11 7.44 31.18 0.23 0.12 16 23 C -0.20 -0.62 5.27 -19.75 -0.10 -0.73 16 24 C -0.07 -0.21 2.37 71.23 0.17 -0.04 16 25 O -0.55 -3.62 12.88 -148.98 -1.92 -5.54 16 26 Si 0.77 -0.62 30.25 68.60 2.08 1.45 16 27 C -0.04 0.00 8.65 22.24 0.19 0.19 16 28 C -0.24 -0.07 9.04 22.38 0.20 0.13 16 29 H 0.10 -0.81 8.14 -2.38 -0.02 -0.83 16 30 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.08 -0.43 7.66 -2.38 -0.02 -0.45 16 33 H 0.07 -0.36 7.66 -2.39 -0.02 -0.37 16 34 H 0.14 0.26 6.30 -2.91 -0.02 0.24 16 35 H 0.08 -0.29 7.66 -2.39 -0.02 -0.30 16 36 H 0.07 -0.14 7.39 -2.39 -0.02 -0.16 16 37 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 38 H 0.12 -1.00 8.10 -2.39 -0.02 -1.01 16 39 H 0.42 -0.96 8.81 -92.71 -0.82 -1.77 16 40 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 41 H 0.09 0.10 8.14 -2.39 -0.02 0.09 16 42 H 0.06 0.66 5.88 -2.39 -0.01 0.64 16 43 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.06 0.60 5.88 -2.39 -0.01 0.59 16 47 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 48 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 49 H 0.10 0.01 7.92 -2.39 -0.02 -0.01 16 50 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 51 H 0.11 0.42 7.82 -2.39 -0.02 0.40 16 52 H 0.38 0.18 8.70 -74.06 -0.64 -0.46 16 53 H -0.31 -2.19 7.11 99.48 0.71 -1.48 16 54 H -0.27 -0.19 6.67 99.48 0.66 0.48 16 55 H 0.15 -0.63 4.85 -2.91 -0.01 -0.64 16 56 H 0.15 -0.68 6.29 -2.91 -0.02 -0.70 16 Total: 0.00 -19.91 443.22 0.38 -19.53 By element: Atomic # 1 Polarization: -6.28 SS G_CDS: -0.57 Total: -6.85 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 5.92 Total: 11.25 kcal Atomic # 7 Polarization: -1.39 SS G_CDS: -2.99 Total: -4.37 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -4.05 Total: -21.00 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: 2.08 Total: 1.45 kcal Total: -19.91 0.38 -19.53 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26952_15734082.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.976 kcal (2) G-P(sol) polarization free energy of solvation -19.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds