Wall clock time and date at job start Tue Mar 9 2021 17:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47184 * 2 1 4 4 C 1.35895 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38619 * 120.02960 * 179.72172 * 4 3 2 6 6 C 1.38657 * 119.89175 * 179.77363 * 5 4 3 7 7 O 1.35894 * 120.02543 * 180.27898 * 6 5 4 8 8 C 1.42897 * 117.00339 * 0.22488 * 7 6 5 9 9 C 1.52999 * 109.47332 * 180.02562 * 8 7 6 10 10 H 1.09001 * 112.84678 * 45.33616 * 9 8 7 11 11 C 1.53783 * 113.61365 * 176.52693 * 9 8 7 12 12 C 1.53785 * 87.07787 * 89.11693 * 11 9 8 13 13 O 1.42895 * 113.61784 * 270.79679 * 12 11 9 14 14 C 1.42904 * 113.99747 * 294.79863 * 13 12 11 15 15 C 1.53007 * 113.61296 * 139.97809 * 12 11 9 16 16 F 1.39904 * 109.47009 * 54.71948 * 15 12 11 17 17 F 1.39898 * 109.46969 * 174.71870 * 15 12 11 18 18 F 1.39898 * 109.47334 * 294.71731 * 15 12 11 19 19 C 1.53777 * 113.61670 * 274.13641 * 9 8 7 20 20 C 1.38750 * 119.94234 * 0.50204 * 6 5 4 21 21 C 1.50702 * 119.97080 * 179.74920 * 20 6 5 22 22 O 1.42902 * 109.47141 * 285.02608 * 21 20 6 23 23 Si 1.86300 * 109.47174 * 165.02432 * 21 20 6 24 24 C 1.38193 * 120.05637 * 359.77696 * 20 6 5 25 25 C 1.38154 * 120.11043 * 359.94509 * 24 20 6 26 26 H 1.08997 * 109.47001 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47313 * 299.99991 * 1 2 3 28 28 H 1.09000 * 109.47002 * 60.00136 * 1 2 3 29 29 H 1.09000 * 109.46848 * 239.99751 * 2 1 3 30 30 H 1.09000 * 109.47002 * 119.99864 * 2 1 3 31 31 H 1.08000 * 120.05001 * 0.02562 * 5 4 3 32 32 H 1.09004 * 109.47191 * 300.00076 * 8 7 6 33 33 H 1.08999 * 109.47268 * 59.99997 * 8 7 6 34 34 H 1.09006 * 113.61461 * 203.66237 * 11 9 8 35 35 H 1.08994 * 113.61602 * 334.56877 * 11 9 8 36 36 H 1.08991 * 109.47268 * 302.52245 * 14 13 12 37 37 H 1.08998 * 109.47666 * 62.52795 * 14 13 12 38 38 H 1.09003 * 109.46652 * 182.52356 * 14 13 12 39 39 H 1.09003 * 113.60866 * 25.43066 * 19 9 8 40 40 H 1.09002 * 113.62023 * 156.33200 * 19 9 8 41 41 H 1.09003 * 109.46926 * 45.02272 * 21 20 6 42 42 H 0.96698 * 114.00417 * 179.97438 * 22 21 20 43 43 H 1.48499 * 109.99909 * 59.99860 * 23 21 20 44 44 H 1.48499 * 109.99760 * 181.31757 * 23 21 20 45 45 H 1.07997 * 119.94315 * 179.97438 * 24 20 6 46 46 H 1.08002 * 119.97279 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8841 2.8059 -0.0053 6 6 5.2591 2.9843 0.0001 7 8 5.7821 4.2386 0.0001 8 6 4.8567 5.3274 -0.0004 9 6 5.6254 6.6502 -0.0009 10 1 6.4487 6.6610 -0.7153 11 6 4.7189 7.8895 -0.0869 12 6 4.6655 7.8597 1.4497 13 8 3.6022 7.0593 1.9701 14 6 2.2976 7.5565 1.6653 15 6 4.7345 9.2466 2.0924 16 9 3.7256 10.0573 1.5613 17 9 4.5587 9.1289 3.4753 18 9 5.9822 9.8214 1.8282 19 6 6.0227 7.1324 1.4042 20 6 6.1006 1.8811 0.0006 21 6 7.5952 2.0742 0.0007 22 8 8.0230 2.4811 -1.3007 23 14 8.4285 0.4712 0.4554 24 6 5.5693 0.6054 0.0006 25 6 4.1996 0.4250 0.0011 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.2274 3.6633 -0.0098 32 1 4.2302 5.2713 -0.8907 33 1 4.2294 5.2716 0.8892 34 1 5.2200 8.7699 -0.4894 35 1 3.7571 7.6948 -0.5611 36 1 2.1982 8.5731 2.0456 37 1 2.1521 7.5568 0.5851 38 1 1.5474 6.9187 2.1328 39 1 6.1125 6.3268 2.1330 40 1 6.8795 7.8061 1.4088 41 1 7.8623 2.8415 0.7274 42 1 8.9764 2.6247 -1.3743 43 1 8.0722 -0.5831 -0.5278 44 1 9.9015 0.6566 0.4900 45 1 6.2260 -0.2520 0.0006 46 1 3.7868 -0.5730 0.0014 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26952_17321600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:07:24 Heat of formation + Delta-G solvation = -232.187692 kcal Electronic energy + Delta-G solvation = -34473.677436 eV Core-core repulsion = 29303.804713 eV Total energy + Delta-G solvation = -5169.872723 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.142 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -51.26874 -48.80316 -48.73594 -41.88201 -41.25999 -39.98083 -38.34375 -37.27431 -36.89926 -33.18413 -31.55616 -31.36894 -30.23970 -28.20248 -27.41152 -26.77983 -26.24592 -24.79141 -23.78097 -22.70512 -22.10140 -20.58046 -20.00537 -19.65449 -19.53868 -19.22759 -18.49998 -17.70549 -17.50125 -17.28432 -17.11025 -16.85745 -16.72642 -16.47448 -15.91049 -15.67438 -15.63803 -15.58494 -15.45388 -15.23161 -15.16851 -14.98445 -14.91173 -14.74964 -14.42749 -14.17987 -13.97282 -13.85721 -13.69451 -13.54122 -13.26459 -13.20025 -13.03646 -12.95675 -12.64308 -12.37897 -12.27308 -12.08260 -11.90118 -11.80476 -11.71539 -11.59716 -11.45883 -10.80980 -10.36938 -9.66909 -9.06721 -4.90133 0.20779 0.33884 1.34026 1.52035 1.61275 1.93217 1.95714 2.07654 2.21121 2.55004 2.55764 2.61939 2.88310 3.30067 3.37575 3.47695 3.51516 3.66782 3.76051 3.91249 4.01781 4.05559 4.11500 4.20121 4.22905 4.24433 4.28554 4.32507 4.35772 4.38402 4.38779 4.49315 4.52096 4.63695 4.65375 4.69579 4.79322 4.82441 4.87051 4.93165 5.00831 5.04079 5.18874 5.28230 5.32069 5.52471 5.70325 6.24354 6.40313 6.67354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.329 6.329 4 C 0.165 3.835 5 C -0.256 4.256 6 C 0.184 3.816 7 O -0.307 6.307 8 C 0.066 3.934 9 C -0.092 4.092 10 H 0.111 0.889 11 C -0.134 4.134 12 C 0.037 3.963 13 O -0.345 6.345 14 C 0.004 3.996 15 C 0.433 3.567 16 F -0.184 7.184 17 F -0.187 7.187 18 F -0.176 7.176 19 C -0.111 4.111 20 C -0.161 4.161 21 C -0.071 4.071 22 O -0.556 6.556 23 Si 0.765 3.235 24 C -0.043 4.043 25 C -0.243 4.243 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.079 0.921 42 H 0.390 0.610 43 H -0.287 1.287 44 H -0.286 1.286 45 H 0.150 0.850 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 -2.814 0.241 3.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 O -0.243 6.243 4 C 0.119 3.881 5 C -0.275 4.275 6 C 0.137 3.863 7 O -0.220 6.220 8 C -0.009 4.009 9 C -0.111 4.111 10 H 0.129 0.871 11 C -0.172 4.172 12 C -0.006 4.006 13 O -0.263 6.263 14 C -0.092 4.092 15 C 0.379 3.621 16 F -0.166 7.166 17 F -0.169 7.169 18 F -0.157 7.157 19 C -0.148 4.148 20 C -0.162 4.162 21 C -0.179 4.179 22 O -0.365 6.365 23 Si 0.670 3.330 24 C -0.061 4.061 25 C -0.261 4.261 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.159 0.841 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.123 0.877 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.144 0.856 41 H 0.097 0.903 42 H 0.239 0.761 43 H -0.215 1.215 44 H -0.213 1.213 45 H 0.167 0.833 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.650 -3.391 0.012 3.771 hybrid contribution 0.189 1.347 -0.702 1.531 sum -1.461 -2.044 -0.690 2.605 Atomic orbital electron populations 1.21818 0.91794 1.04150 1.03120 1.23109 0.96651 0.80472 1.02728 1.86057 1.18628 1.31692 1.87958 1.18817 0.82803 0.93600 0.92851 1.20526 0.93933 0.96962 1.16081 1.18493 0.90437 0.84743 0.92614 1.86065 1.36290 1.11931 1.87699 1.22878 0.91438 0.83638 1.02942 1.22000 0.99492 0.91401 0.98180 0.87079 1.23625 1.02881 0.99554 0.91093 1.24225 0.94105 0.86160 0.96109 1.88076 1.14404 1.47329 1.76477 1.23286 0.82863 1.00640 1.02367 1.21500 0.73653 0.89964 0.77003 1.93177 1.60867 1.76446 1.86090 1.93189 1.95051 1.96273 1.32357 1.93171 1.42381 1.86534 1.93646 1.23361 0.92463 1.00714 0.98252 1.18736 0.94102 0.91358 1.11970 1.24810 0.94747 1.10789 0.87555 1.86574 1.29424 1.89778 1.30719 0.94170 0.76792 0.74292 0.87751 1.20910 0.95229 0.95759 0.94195 1.21329 0.93600 0.99073 1.12134 0.88330 0.91828 0.92065 0.90949 0.90404 0.84082 0.91074 0.89976 0.85785 0.87736 0.93427 0.91248 0.87095 0.88977 0.85641 0.90290 0.76084 1.21456 1.21305 0.83257 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.58 10.28 71.98 0.74 1.32 16 2 C 0.04 -0.08 5.46 71.98 0.39 0.31 16 3 O -0.33 -1.56 10.13 -92.37 -0.94 -2.50 16 4 C 0.17 0.91 6.68 22.49 0.15 1.06 16 5 C -0.26 -1.57 8.97 22.46 0.20 -1.37 16 6 C 0.18 1.26 6.66 22.49 0.15 1.41 16 7 O -0.31 -1.69 9.46 -92.35 -0.87 -2.56 16 8 C 0.07 0.03 4.33 71.98 0.31 0.34 16 9 C -0.09 0.26 4.19 -10.27 -0.04 0.22 16 10 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 11 C -0.13 0.62 6.52 31.12 0.20 0.83 16 12 C 0.04 -0.02 0.85 -10.17 -0.01 -0.03 16 13 O -0.34 -0.39 8.34 -148.98 -1.24 -1.64 16 14 C 0.00 -0.01 10.43 113.37 1.18 1.17 16 15 C 0.43 1.16 2.51 71.98 0.18 1.34 16 16 F -0.18 -0.58 15.24 44.97 0.69 0.11 16 17 F -0.19 -1.24 17.09 44.97 0.77 -0.47 16 18 F -0.18 -0.46 15.82 44.97 0.71 0.26 16 19 C -0.11 0.22 6.92 31.21 0.22 0.43 16 20 C -0.16 -0.92 5.31 -19.75 -0.10 -1.03 16 21 C -0.07 -0.21 2.36 71.24 0.17 -0.04 16 22 O -0.56 -3.00 12.86 -148.98 -1.92 -4.91 16 23 Si 0.77 -0.52 30.20 68.60 2.07 1.55 16 24 C -0.04 -0.14 8.65 22.24 0.19 0.05 16 25 C -0.24 -0.65 9.04 22.38 0.20 -0.45 16 26 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 27 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.06 -0.16 8.14 -2.39 -0.02 -0.17 16 29 H 0.07 -0.26 7.66 -2.39 -0.02 -0.28 16 30 H 0.08 -0.34 7.66 -2.39 -0.02 -0.36 16 31 H 0.14 0.58 6.30 -2.91 -0.02 0.56 16 32 H 0.07 -0.04 7.65 -2.39 -0.02 -0.06 16 33 H 0.08 0.10 5.62 -2.39 -0.01 0.08 16 34 H 0.12 -0.84 8.07 -2.38 -0.02 -0.86 16 35 H 0.10 -0.68 6.70 -2.39 -0.02 -0.70 16 36 H 0.05 -0.05 6.25 -2.39 -0.01 -0.06 16 37 H 0.07 -0.39 6.76 -2.39 -0.02 -0.41 16 38 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.09 -0.02 8.10 -2.39 -0.02 -0.04 16 40 H 0.13 -0.51 7.01 -2.39 -0.02 -0.53 16 41 H 0.08 0.11 7.82 -2.39 -0.02 0.09 16 42 H 0.39 -1.05 8.74 -74.06 -0.65 -1.70 16 43 H -0.29 -1.29 6.75 99.48 0.67 -0.62 16 44 H -0.29 -0.93 7.11 99.48 0.71 -0.22 16 45 H 0.15 -0.07 4.89 -2.91 -0.01 -0.09 16 46 H 0.15 -0.38 6.29 -2.91 -0.02 -0.39 16 Total: 0.00 -16.05 378.40 3.80 -12.25 By element: Atomic # 1 Polarization: -8.07 SS G_CDS: 0.39 Total: -7.67 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 4.14 Total: 5.59 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -4.97 Total: -11.61 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 2.17 Total: -0.11 kcal Atomic # 14 Polarization: -0.52 SS G_CDS: 2.07 Total: 1.55 kcal Total: -16.05 3.80 -12.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26952_17321600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -219.940 kcal (2) G-P(sol) polarization free energy of solvation -16.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds