Wall clock time and date at job start Tue Mar 9 2021 17:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47503 * 2 1 4 4 C 1.35895 * 116.99929 * 179.97438 * 3 2 1 5 5 C 1.38748 * 120.03253 * 359.97438 * 4 3 2 6 6 C 1.38193 * 120.05623 * 179.97438 * 5 4 3 7 7 C 1.38153 * 120.10977 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.97000 * 179.97438 * 7 6 5 9 9 O 1.42897 * 109.47019 * 105.00189 * 8 7 6 10 10 Si 1.86299 * 109.47227 * 344.99923 * 8 7 6 11 11 H 1.48498 * 109.46786 * 60.00447 * 10 8 7 12 12 H 1.48493 * 109.46808 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47178 * 299.99996 * 10 8 7 14 14 C 1.38787 * 120.05396 * 359.97438 * 7 6 5 15 15 O 1.35902 * 120.02682 * 180.02562 * 14 7 6 16 16 C 1.42900 * 116.99895 * 185.82478 * 15 14 7 17 17 Si 1.86295 * 109.47362 * 77.93143 * 16 15 14 18 18 C 1.86302 * 109.47380 * 66.28607 * 17 16 15 19 19 C 1.86303 * 109.47225 * 186.28459 * 17 16 15 20 20 C 1.86299 * 109.47175 * 306.28594 * 17 16 15 21 21 C 1.38617 * 119.94776 * 359.74577 * 14 7 6 22 22 H 1.09006 * 109.47153 * 60.00015 * 1 2 3 23 23 H 1.08993 * 109.47464 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47287 * 300.00357 * 1 2 3 25 25 H 1.08999 * 109.47287 * 239.99643 * 2 1 3 26 26 H 1.09006 * 109.47153 * 119.99984 * 2 1 3 27 27 H 1.08008 * 119.96862 * 0.02562 * 5 4 3 28 28 H 1.08005 * 119.94251 * 180.02562 * 6 5 4 29 29 H 1.09003 * 109.46407 * 224.99898 * 8 7 6 30 30 H 0.96699 * 114.00422 * 299.99492 * 9 8 7 31 31 H 1.09004 * 109.46993 * 197.93477 * 16 15 14 32 32 H 1.08994 * 109.47093 * 317.92735 * 16 15 14 33 33 H 1.09002 * 109.46873 * 59.99827 * 18 17 16 34 34 H 1.08994 * 109.47428 * 179.97438 * 18 17 16 35 35 H 1.09005 * 109.46953 * 300.00474 * 18 17 16 36 36 H 1.09000 * 109.46581 * 59.99934 * 19 17 16 37 37 H 1.08997 * 109.47363 * 179.97438 * 19 17 16 38 38 H 1.09002 * 109.47175 * 300.00263 * 19 17 16 39 39 H 1.08999 * 109.46836 * 54.68778 * 20 17 16 40 40 H 1.09001 * 109.47137 * 174.68637 * 20 17 16 41 41 H 1.08996 * 109.47143 * 294.68748 * 20 17 16 42 42 H 1.07999 * 120.05506 * 180.25452 * 21 14 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5252 0.0005 5 6 4.1994 0.4253 0.0016 6 6 5.5695 0.6057 0.0016 7 6 6.1006 1.8810 0.0011 8 6 7.5952 2.0741 0.0017 9 8 8.0235 2.4802 -1.2997 10 14 8.4283 0.4714 0.4577 11 1 8.0647 -0.5744 -0.5319 12 1 9.9009 0.6619 0.4589 13 1 7.9832 0.0494 1.8101 14 6 5.2588 2.9845 0.0001 15 8 5.7819 4.2388 -0.0010 16 6 4.8625 5.3252 0.1272 17 14 4.3445 5.4936 1.9088 18 6 5.8108 6.0097 2.9357 19 6 3.0054 6.7814 2.0471 20 6 3.6995 3.8582 2.5252 21 6 3.8842 2.8062 -0.0058 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.7865 -0.5728 0.0016 28 1 6.2261 -0.2518 0.0020 29 1 7.8620 2.8418 0.7281 30 1 7.8185 1.8434 -1.9978 31 1 5.3420 6.2476 -0.2006 32 1 3.9847 5.1331 -0.4898 33 1 6.1882 6.9666 2.5750 34 1 5.5077 6.1087 3.9780 35 1 6.5943 5.2563 2.8547 36 1 2.1475 6.4794 1.4463 37 1 2.7020 6.8796 3.0894 38 1 3.3828 7.7383 1.6864 39 1 4.4494 3.0853 2.3573 40 1 3.4849 3.9308 3.5914 41 1 2.7867 3.6017 1.9876 42 1 3.2276 3.6637 -0.0108 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26952_3095236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:15:29 Heat of formation + Delta-G solvation = -116.766247 kcal Electronic energy + Delta-G solvation = -21598.783236 eV Core-core repulsion = 18475.591957 eV Total energy + Delta-G solvation = -3123.191279 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.67033 -40.01231 -38.23467 -36.88291 -33.20824 -31.49371 -31.17227 -29.70142 -28.48176 -28.30607 -27.78683 -26.18743 -24.78014 -22.85156 -22.12573 -19.84807 -18.25226 -17.57123 -17.23964 -17.14375 -16.79604 -16.45644 -15.80385 -15.68951 -15.17385 -14.85879 -14.41444 -14.29898 -14.12620 -13.92403 -13.85566 -13.78017 -13.56894 -13.44116 -13.32752 -13.24604 -13.12016 -12.95218 -12.63049 -12.49554 -12.19134 -12.07677 -11.83841 -11.64721 -11.50925 -10.94385 -10.85113 -10.68114 -10.22899 -9.39397 -8.87374 0.31333 0.43469 1.23963 1.45396 1.47732 1.57488 1.67406 1.76286 1.97229 2.12158 2.49329 2.50907 2.70540 3.65421 3.71750 3.90487 3.91137 3.99267 4.08859 4.12422 4.24208 4.31965 4.42601 4.48025 4.63952 4.65158 4.66888 4.72008 4.75865 4.77162 4.78549 4.80148 4.81642 4.84674 5.04060 5.13153 5.35157 5.36563 5.40925 5.52859 5.58606 5.61118 6.31114 6.49758 6.73506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.053 3.947 3 O -0.313 6.313 4 C 0.176 3.824 5 C -0.243 4.243 6 C -0.051 4.051 7 C -0.194 4.194 8 C -0.063 4.063 9 O -0.535 6.535 10 Si 0.944 3.056 11 H -0.253 1.253 12 H -0.253 1.253 13 H -0.249 1.249 14 C 0.191 3.809 15 O -0.275 6.275 16 C -0.249 4.249 17 Si 0.987 3.013 18 C -0.444 4.444 19 C -0.448 4.448 20 C -0.447 4.447 21 C -0.240 4.240 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.116 0.884 30 H 0.371 0.629 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 -1.541 0.785 3.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.022 4.022 3 O -0.227 6.227 4 C 0.129 3.871 5 C -0.262 4.262 6 C -0.069 4.069 7 C -0.195 4.195 8 C -0.174 4.174 9 O -0.339 6.339 10 Si 0.767 3.233 11 H -0.177 1.177 12 H -0.177 1.177 13 H -0.172 1.172 14 C 0.144 3.856 15 O -0.186 6.186 16 C -0.369 4.369 17 Si 1.183 2.817 18 C -0.552 4.552 19 C -0.556 4.556 20 C -0.555 4.555 21 C -0.259 4.259 22 H 0.086 0.914 23 H 0.099 0.901 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.134 0.866 30 H 0.218 0.782 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.863 -1.583 1.284 2.761 hybrid contribution -0.720 -0.256 -0.495 0.911 sum -2.583 -1.839 0.789 3.267 Atomic orbital electron populations 1.21793 0.92447 1.03145 1.03684 1.22854 0.96084 0.81525 1.01687 1.86073 1.18808 1.29835 1.87980 1.18617 0.82357 0.93258 0.92824 1.21055 0.93799 0.98293 1.13012 1.20700 0.94951 0.95657 0.95565 1.19479 0.96191 0.91017 1.12819 1.24723 0.92185 1.11155 0.89300 1.86554 1.82062 1.49167 1.16139 0.85833 0.80415 0.75904 0.81151 1.17719 1.17694 1.17250 1.18383 0.90137 0.85033 0.92050 1.86139 1.34501 1.11278 1.86711 1.28231 0.97993 0.90609 1.20113 0.79870 0.67743 0.68448 0.65592 1.26018 1.14222 1.05874 1.09075 1.26061 1.12509 1.11957 1.05042 1.26424 1.06724 1.16175 1.06219 1.20425 0.94124 0.96420 1.14965 0.91403 0.90138 0.91395 0.91764 0.91735 0.85111 0.85178 0.86649 0.78222 0.87199 0.90832 0.91098 0.91070 0.90784 0.91051 0.90691 0.90986 0.90908 0.91237 0.90653 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.27 10.28 37.16 0.38 0.66 16 2 C 0.05 -0.04 5.46 37.16 0.20 0.16 16 3 O -0.31 -0.59 10.13 -19.41 -0.20 -0.79 16 4 C 0.18 0.37 6.68 -39.24 -0.26 0.10 16 5 C -0.24 -0.27 9.04 -39.41 -0.36 -0.63 16 6 C -0.05 -0.05 8.65 -39.63 -0.34 -0.40 16 7 C -0.19 -0.37 5.27 -104.45 -0.55 -0.92 16 8 C -0.06 -0.08 2.37 36.01 0.09 0.01 16 9 O -0.53 -1.13 12.88 -35.23 -0.45 -1.58 16 10 Si 0.94 0.25 25.49 -169.99 -4.33 -4.09 16 11 H -0.25 0.04 6.73 56.52 0.38 0.42 16 12 H -0.25 -0.42 7.11 56.52 0.40 -0.02 16 13 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 14 C 0.19 0.46 5.14 -39.24 -0.20 0.26 16 15 O -0.27 -0.65 9.12 -19.43 -0.18 -0.83 16 16 C -0.25 0.08 5.30 101.05 0.54 0.62 16 17 Si 0.99 -1.76 11.68 -169.99 -1.99 -3.75 16 18 C -0.44 0.30 8.65 101.05 0.87 1.17 16 19 C -0.45 0.71 8.65 101.05 0.87 1.59 16 20 C -0.45 0.07 7.04 101.05 0.71 0.79 16 21 C -0.24 -0.46 5.57 -39.29 -0.22 -0.68 16 22 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 23 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 24 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 25 H 0.06 -0.10 7.66 -51.93 -0.40 -0.50 16 26 H 0.06 -0.11 7.66 -51.93 -0.40 -0.50 16 27 H 0.13 -0.11 6.29 -52.48 -0.33 -0.44 16 28 H 0.13 -0.08 4.88 -52.48 -0.26 -0.34 16 29 H 0.12 0.13 7.83 -51.93 -0.41 -0.28 16 30 H 0.37 -0.47 8.70 45.56 0.40 -0.07 16 31 H 0.11 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.07 6.06 -51.93 -0.31 -0.38 16 33 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 34 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 35 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 36 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 39 H 0.07 0.07 6.26 -51.93 -0.33 -0.25 16 40 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 41 H 0.07 0.01 6.56 -51.93 -0.34 -0.33 16 42 H 0.14 0.09 4.75 -52.49 -0.25 -0.16 16 LS Contribution 333.13 15.07 5.02 5.02 Total: 0.00 -5.21 333.13 -6.41 -11.62 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: -6.01 Total: -8.33 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 1.73 Total: 2.72 kcal Atomic # 8 Polarization: -2.37 SS G_CDS: -0.83 Total: -3.20 kcal Atomic # 14 Polarization: -1.52 SS G_CDS: -6.32 Total: -7.83 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -5.21 -6.41 -11.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26952_3095236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.149 kcal (2) G-P(sol) polarization free energy of solvation -5.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds