Wall clock time and date at job start Tue Mar 9 2021 17:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47503 * 2 1 4 4 C 1.35895 * 116.99929 * 179.97438 * 3 2 1 5 5 C 1.38748 * 120.03253 * 359.97438 * 4 3 2 6 6 C 1.38193 * 120.05623 * 179.97438 * 5 4 3 7 7 C 1.38153 * 120.10977 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.97000 * 179.97438 * 7 6 5 9 9 O 1.42897 * 109.47019 * 105.00189 * 8 7 6 10 10 Si 1.86299 * 109.47227 * 344.99923 * 8 7 6 11 11 H 1.48498 * 109.46786 * 60.00447 * 10 8 7 12 12 H 1.48493 * 109.46808 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47178 * 299.99996 * 10 8 7 14 14 C 1.38787 * 120.05396 * 359.97438 * 7 6 5 15 15 O 1.35902 * 120.02682 * 180.02562 * 14 7 6 16 16 C 1.42900 * 116.99895 * 185.82478 * 15 14 7 17 17 Si 1.86295 * 109.47362 * 77.93143 * 16 15 14 18 18 C 1.86302 * 109.47380 * 66.28607 * 17 16 15 19 19 C 1.86303 * 109.47225 * 186.28459 * 17 16 15 20 20 C 1.86299 * 109.47175 * 306.28594 * 17 16 15 21 21 C 1.38617 * 119.94776 * 359.74577 * 14 7 6 22 22 H 1.09006 * 109.47153 * 60.00015 * 1 2 3 23 23 H 1.08993 * 109.47464 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47287 * 300.00357 * 1 2 3 25 25 H 1.08999 * 109.47287 * 239.99643 * 2 1 3 26 26 H 1.09006 * 109.47153 * 119.99984 * 2 1 3 27 27 H 1.08008 * 119.96862 * 0.02562 * 5 4 3 28 28 H 1.08005 * 119.94251 * 180.02562 * 6 5 4 29 29 H 1.09003 * 109.46407 * 224.99898 * 8 7 6 30 30 H 0.96699 * 114.00422 * 299.99492 * 9 8 7 31 31 H 1.09004 * 109.46993 * 197.93477 * 16 15 14 32 32 H 1.08994 * 109.47093 * 317.92735 * 16 15 14 33 33 H 1.09002 * 109.46873 * 59.99827 * 18 17 16 34 34 H 1.08994 * 109.47428 * 179.97438 * 18 17 16 35 35 H 1.09005 * 109.46953 * 300.00474 * 18 17 16 36 36 H 1.09000 * 109.46581 * 59.99934 * 19 17 16 37 37 H 1.08997 * 109.47363 * 179.97438 * 19 17 16 38 38 H 1.09002 * 109.47175 * 300.00263 * 19 17 16 39 39 H 1.08999 * 109.46836 * 54.68778 * 20 17 16 40 40 H 1.09001 * 109.47137 * 174.68637 * 20 17 16 41 41 H 1.08996 * 109.47143 * 294.68748 * 20 17 16 42 42 H 1.07999 * 120.05506 * 180.25452 * 21 14 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5252 0.0005 5 6 4.1994 0.4253 0.0016 6 6 5.5695 0.6057 0.0016 7 6 6.1006 1.8810 0.0011 8 6 7.5952 2.0741 0.0017 9 8 8.0235 2.4802 -1.2997 10 14 8.4283 0.4714 0.4577 11 1 8.0647 -0.5744 -0.5319 12 1 9.9009 0.6619 0.4589 13 1 7.9832 0.0494 1.8101 14 6 5.2588 2.9845 0.0001 15 8 5.7819 4.2388 -0.0010 16 6 4.8625 5.3252 0.1272 17 14 4.3445 5.4936 1.9088 18 6 5.8108 6.0097 2.9357 19 6 3.0054 6.7814 2.0471 20 6 3.6995 3.8582 2.5252 21 6 3.8842 2.8062 -0.0058 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.7865 -0.5728 0.0016 28 1 6.2261 -0.2518 0.0020 29 1 7.8620 2.8418 0.7281 30 1 7.8185 1.8434 -1.9978 31 1 5.3420 6.2476 -0.2006 32 1 3.9847 5.1331 -0.4898 33 1 6.1882 6.9666 2.5750 34 1 5.5077 6.1087 3.9780 35 1 6.5943 5.2563 2.8547 36 1 2.1475 6.4794 1.4463 37 1 2.7020 6.8796 3.0894 38 1 3.3828 7.7383 1.6864 39 1 4.4494 3.0853 2.3573 40 1 3.4849 3.9308 3.5914 41 1 2.7867 3.6017 1.9876 42 1 3.2276 3.6637 -0.0108 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26952_3095236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:15:29 Heat of formation + Delta-G solvation = -110.324022 kcal Electronic energy + Delta-G solvation = -21598.503880 eV Core-core repulsion = 18475.591957 eV Total energy + Delta-G solvation = -3122.911923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.73030 -40.05969 -38.30997 -36.96058 -33.17947 -31.49824 -31.22988 -29.63536 -28.38852 -28.27133 -27.77256 -26.25673 -24.73331 -22.89165 -22.16423 -19.89641 -18.32705 -17.63566 -17.27429 -17.16064 -16.82951 -16.49789 -15.82803 -15.74569 -15.22817 -14.89822 -14.38258 -14.30616 -14.06305 -13.86717 -13.81925 -13.73971 -13.51004 -13.34669 -13.25749 -13.21385 -13.07586 -12.92313 -12.62164 -12.48791 -12.17398 -12.13859 -11.86729 -11.61542 -11.55267 -10.86516 -10.79493 -10.66750 -10.30362 -9.46741 -8.94629 0.23146 0.35020 1.19773 1.43612 1.54002 1.56993 1.78116 1.84955 1.92387 2.13359 2.51267 2.54988 2.63364 3.62584 3.69558 3.87526 4.03660 4.04796 4.08902 4.16149 4.30040 4.36538 4.41809 4.44097 4.69854 4.72670 4.76410 4.77236 4.80626 4.81489 4.81958 4.85397 4.89796 4.91657 5.04955 5.19113 5.29449 5.30863 5.51755 5.53751 5.60762 5.61990 6.27878 6.44586 6.78707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.329 6.329 4 C 0.163 3.837 5 C -0.246 4.246 6 C -0.054 4.054 7 C -0.205 4.205 8 C -0.070 4.070 9 O -0.553 6.553 10 Si 0.981 3.019 11 H -0.240 1.240 12 H -0.275 1.275 13 H -0.255 1.255 14 C 0.179 3.821 15 O -0.291 6.291 16 C -0.268 4.268 17 Si 1.051 2.949 18 C -0.458 4.458 19 C -0.454 4.454 20 C -0.460 4.460 21 C -0.248 4.248 22 H 0.062 0.938 23 H 0.097 0.903 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.147 0.853 29 H 0.109 0.891 30 H 0.384 0.616 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 -2.037 0.752 3.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.243 6.243 4 C 0.117 3.883 5 C -0.265 4.265 6 C -0.072 4.072 7 C -0.206 4.206 8 C -0.179 4.179 9 O -0.360 6.360 10 Si 0.804 3.196 11 H -0.164 1.164 12 H -0.200 1.200 13 H -0.178 1.178 14 C 0.132 3.868 15 O -0.203 6.203 16 C -0.387 4.387 17 Si 1.244 2.756 18 C -0.566 4.566 19 C -0.562 4.562 20 C -0.566 4.566 21 C -0.267 4.267 22 H 0.081 0.919 23 H 0.116 0.884 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.167 0.833 28 H 0.165 0.835 29 H 0.127 0.873 30 H 0.233 0.767 31 H 0.137 0.863 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.329 -2.096 1.238 3.369 hybrid contribution -0.592 -0.087 -0.491 0.774 sum -2.921 -2.183 0.746 3.722 Atomic orbital electron populations 1.21816 0.91817 1.04104 1.03157 1.23079 0.96634 0.80626 1.02552 1.86056 1.18727 1.31447 1.88026 1.18790 0.82706 0.93622 0.93160 1.21306 0.93799 0.98970 1.12387 1.20914 0.95281 0.95839 0.95130 1.19674 0.96487 0.91403 1.13059 1.24883 0.92143 1.11976 0.88921 1.86509 1.82233 1.50317 1.16907 0.85307 0.78369 0.75054 0.80890 1.16388 1.20002 1.17841 1.18549 0.90455 0.85268 0.92508 1.86107 1.35596 1.11750 1.86885 1.28589 0.98016 0.90247 1.21843 0.78893 0.66454 0.66752 0.63519 1.26198 1.14778 1.05866 1.09727 1.26114 1.12590 1.12222 1.05259 1.26603 1.06290 1.17263 1.06481 1.20551 0.94171 0.96898 1.15049 0.91924 0.88423 0.91903 0.90849 0.90853 0.83256 0.83522 0.87295 0.76744 0.86259 0.90428 0.90749 0.90789 0.91702 0.90806 0.90527 0.90412 0.92202 0.91015 0.91073 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.58 10.28 71.98 0.74 1.32 16 2 C 0.05 -0.08 5.46 71.98 0.39 0.31 16 3 O -0.33 -1.38 10.13 -92.36 -0.94 -2.32 16 4 C 0.16 0.77 6.68 22.49 0.15 0.92 16 5 C -0.25 -0.52 9.04 22.38 0.20 -0.31 16 6 C -0.05 -0.11 8.65 22.24 0.19 0.08 16 7 C -0.20 -0.93 5.27 -19.75 -0.10 -1.04 16 8 C -0.07 -0.24 2.37 71.24 0.17 -0.07 16 9 O -0.55 -2.77 12.88 -148.98 -1.92 -4.68 16 10 Si 0.98 0.48 25.49 68.60 1.75 2.23 16 11 H -0.24 0.40 6.73 99.48 0.67 1.07 16 12 H -0.27 -1.08 7.11 99.48 0.71 -0.38 16 13 H -0.25 -0.32 7.11 99.48 0.71 0.39 16 14 C 0.18 1.06 5.14 22.49 0.12 1.18 16 15 O -0.29 -1.74 9.12 -92.45 -0.84 -2.59 16 16 C -0.27 0.00 5.30 113.37 0.60 0.60 16 17 Si 1.05 -3.34 11.68 68.60 0.80 -2.54 16 18 C -0.46 0.37 8.65 113.37 0.98 1.35 16 19 C -0.45 1.64 8.65 113.37 0.98 2.62 16 20 C -0.46 -0.27 7.04 113.37 0.80 0.53 16 21 C -0.25 -1.20 5.57 22.46 0.13 -1.08 16 22 H 0.06 -0.17 8.14 -2.38 -0.02 -0.19 16 23 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 24 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 25 H 0.07 -0.28 7.66 -2.39 -0.02 -0.30 16 26 H 0.07 -0.28 7.66 -2.38 -0.02 -0.30 16 27 H 0.15 -0.38 6.29 -2.91 -0.02 -0.40 16 28 H 0.15 -0.32 4.88 -2.91 -0.01 -0.33 16 29 H 0.11 0.42 7.83 -2.39 -0.02 0.40 16 30 H 0.38 -0.78 8.70 -74.06 -0.64 -1.43 16 31 H 0.12 -0.29 7.96 -2.38 -0.02 -0.31 16 32 H 0.08 -0.09 6.06 -2.39 -0.01 -0.10 16 33 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 34 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 35 H 0.06 0.07 7.96 -2.38 -0.02 0.06 16 36 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 37 H 0.08 -0.27 7.96 -2.39 -0.02 -0.29 16 38 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 39 H 0.06 0.21 6.26 -2.39 -0.01 0.19 16 40 H 0.07 -0.02 7.96 -2.39 -0.02 -0.04 16 41 H 0.07 0.10 6.56 -2.39 -0.02 0.08 16 42 H 0.15 0.34 4.75 -2.91 -0.01 0.33 16 Total: 0.00 -12.15 333.13 5.28 -6.87 By element: Atomic # 1 Polarization: -4.47 SS G_CDS: 1.08 Total: -3.38 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 5.34 Total: 6.41 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -3.70 Total: -9.59 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: 2.55 Total: -0.31 kcal Total: -12.15 5.28 -6.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26952_3095236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.452 kcal (2) G-P(sol) polarization free energy of solvation -12.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds