Wall clock time and date at job start Tue Mar 9 2021 17:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35897 * 117.00481 * 180.02562 * 3 2 1 5 5 C 1.38757 * 120.02287 * 359.97438 * 4 3 2 6 6 C 1.38193 * 120.05390 * 179.97438 * 5 4 3 7 7 C 1.38155 * 120.11004 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.97034 * 180.02562 * 7 6 5 9 9 O 1.42900 * 109.47272 * 104.99627 * 8 7 6 10 10 Si 1.86298 * 109.47504 * 344.99201 * 8 7 6 11 11 H 1.48503 * 109.46746 * 60.00101 * 10 8 7 12 12 H 1.48500 * 109.47324 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47045 * 300.00582 * 10 8 7 14 14 C 1.38790 * 120.05167 * 359.97313 * 7 6 5 15 15 O 1.35900 * 120.02321 * 180.02562 * 14 7 6 16 16 C 1.42900 * 116.99698 * 180.02562 * 15 14 7 17 17 C 1.50712 * 109.47109 * 179.97438 * 16 15 14 18 18 C 1.38237 * 119.99462 * 269.72924 * 17 16 15 19 19 C 1.38239 * 119.99470 * 179.76775 * 18 17 16 20 20 C 1.38230 * 119.99857 * 0.50095 * 19 18 17 21 21 Si 1.86806 * 120.00056 * 179.72687 * 20 19 18 22 22 C 1.86298 * 109.47272 * 270.02353 * 21 20 19 23 23 C 1.86305 * 109.46873 * 30.02498 * 21 20 19 24 24 C 1.86299 * 109.47289 * 150.02281 * 21 20 19 25 25 C 1.38238 * 120.00259 * 359.75129 * 20 19 18 26 26 C 1.38230 * 120.00000 * 89.99796 * 17 16 15 27 27 C 1.38610 * 119.94721 * 359.74859 * 14 7 6 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 33 33 H 1.07999 * 119.97216 * 359.97438 * 5 4 3 34 34 H 1.08007 * 119.94479 * 179.97438 * 6 5 4 35 35 H 1.09011 * 109.46859 * 224.99262 * 8 7 6 36 36 H 0.96697 * 114.00346 * 299.99816 * 9 8 7 37 37 H 1.08997 * 109.47217 * 299.99449 * 16 15 14 38 38 H 1.08996 * 109.47673 * 60.00102 * 16 15 14 39 39 H 1.07997 * 120.00362 * 359.97438 * 18 17 16 40 40 H 1.07999 * 119.99716 * 180.23019 * 19 18 17 41 41 H 1.09003 * 109.47002 * 59.99648 * 22 21 20 42 42 H 1.09000 * 109.47076 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.46920 * 300.00041 * 22 21 20 44 44 H 1.09000 * 109.47038 * 59.99955 * 23 21 20 45 45 H 1.09002 * 109.47155 * 180.02562 * 23 21 20 46 46 H 1.09001 * 109.46555 * 299.99646 * 23 21 20 47 47 H 1.09002 * 109.47047 * 59.99871 * 24 21 20 48 48 H 1.09000 * 109.47444 * 180.02562 * 24 21 20 49 49 H 1.09008 * 109.46941 * 300.00293 * 24 21 20 50 50 H 1.08003 * 120.00073 * 179.97438 * 25 20 19 51 51 H 1.08000 * 119.99835 * 0.02562 * 26 17 16 52 52 H 1.08005 * 120.05431 * 180.25384 * 27 14 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1993 0.4253 -0.0005 6 6 5.5694 0.6057 -0.0016 7 6 6.1006 1.8811 -0.0022 8 6 7.5951 2.0742 -0.0039 9 8 8.0214 2.4810 -1.3058 10 14 8.4290 0.4712 0.4498 11 1 8.0638 -0.5741 -0.5397 12 1 9.9018 0.6617 0.4487 13 1 7.9860 0.0485 1.8026 14 6 5.2588 2.9846 -0.0022 15 8 5.7819 4.2389 -0.0033 16 6 4.8564 5.3277 -0.0027 17 6 5.6137 6.6307 -0.0035 18 6 5.9569 7.2312 1.1934 19 6 6.6557 8.4239 1.1928 20 6 7.0021 9.0213 -0.0047 21 14 7.9398 10.6370 -0.0056 22 6 6.7324 12.0558 -0.0048 23 6 9.0123 10.7334 1.5147 24 6 9.0099 10.7332 -1.5275 25 6 6.6543 8.4235 -1.2015 26 6 5.9600 7.2281 -1.2009 27 6 3.8842 2.8062 -0.0070 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7865 -0.5726 0.0003 34 1 6.2261 -0.2518 -0.0012 35 1 7.8632 2.8415 0.7224 36 1 7.8151 1.8446 -2.0040 37 1 4.2286 5.2714 -0.8920 38 1 4.2305 5.2722 0.8879 39 1 5.6821 6.7668 2.1290 40 1 6.9272 8.8912 2.1279 41 1 6.1062 11.9995 0.8857 42 1 7.2795 12.9985 -0.0058 43 1 6.1049 11.9993 -0.8943 44 1 9.7187 9.9033 1.5142 45 1 9.5591 11.6763 1.5145 46 1 8.3861 10.6772 2.4052 47 1 8.3824 10.6767 -2.4170 48 1 9.5574 11.6757 -1.5279 49 1 9.7164 9.9030 -1.5280 50 1 6.9246 8.8905 -2.1371 51 1 5.6876 6.7613 -2.1359 52 1 3.2275 3.6637 -0.0112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26952_9276060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:17:13 Heat of formation + Delta-G solvation = -106.063914 kcal Electronic energy + Delta-G solvation = -29378.698964 eV Core-core repulsion = 25431.991973 eV Total energy + Delta-G solvation = -3946.706991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66968 -40.39284 -39.64301 -38.21883 -36.90521 -33.25159 -32.98728 -31.82847 -31.35587 -30.83216 -29.54589 -28.41283 -28.39060 -27.35213 -26.21746 -24.84559 -23.42759 -23.30385 -22.17474 -21.78745 -19.91878 -18.30465 -17.87163 -17.31377 -17.23685 -17.21282 -16.91267 -16.51728 -16.02925 -15.84554 -15.43163 -15.31292 -15.10884 -14.73125 -14.33403 -14.31240 -14.23579 -14.14797 -14.09036 -13.85713 -13.82512 -13.75931 -13.49020 -13.25662 -13.24222 -13.23505 -13.07562 -13.02194 -12.94720 -12.49327 -12.21987 -12.17731 -12.07958 -11.89459 -11.84136 -11.51907 -11.47295 -11.01346 -10.87644 -10.79028 -10.23623 -9.72134 -9.63398 -9.60009 -8.99885 0.22613 0.27180 0.40966 0.60687 1.23673 1.45042 1.57396 1.73741 1.87818 1.91214 1.97076 2.08338 2.36126 2.57469 2.65509 3.09449 3.64078 3.66415 3.80463 3.84921 3.89030 3.89636 3.97521 4.06123 4.11644 4.21771 4.24396 4.27753 4.33399 4.40605 4.50384 4.56264 4.70809 4.71157 4.72754 4.74513 4.77419 4.77640 4.78491 4.78674 4.79357 4.81108 5.02833 5.05950 5.10518 5.20895 5.31194 5.33053 5.44216 5.49662 5.53627 5.55506 5.55937 5.66985 5.68296 6.16721 6.28400 6.46215 6.73498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.053 3.947 3 O -0.314 6.314 4 C 0.178 3.822 5 C -0.242 4.242 6 C -0.049 4.049 7 C -0.191 4.191 8 C -0.062 4.062 9 O -0.534 6.534 10 Si 0.946 3.054 11 H -0.253 1.253 12 H -0.253 1.253 13 H -0.250 1.250 14 C 0.198 3.802 15 O -0.289 6.289 16 C 0.097 3.903 17 C -0.087 4.087 18 C -0.107 4.107 19 C -0.092 4.092 20 C -0.361 4.361 21 Si 1.060 2.940 22 C -0.449 4.449 23 C -0.450 4.450 24 C -0.450 4.450 25 C -0.091 4.091 26 C -0.103 4.103 27 C -0.247 4.247 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.115 0.885 36 H 0.371 0.629 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.123 0.877 51 H 0.121 0.879 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 -0.818 0.141 1.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.022 4.022 3 O -0.227 6.227 4 C 0.131 3.869 5 C -0.261 4.261 6 C -0.066 4.066 7 C -0.192 4.192 8 C -0.173 4.173 9 O -0.338 6.338 10 Si 0.769 3.231 11 H -0.177 1.177 12 H -0.177 1.177 13 H -0.173 1.173 14 C 0.151 3.849 15 O -0.202 6.202 16 C 0.023 3.977 17 C -0.087 4.087 18 C -0.125 4.125 19 C -0.110 4.110 20 C -0.403 4.403 21 Si 1.251 2.749 22 C -0.556 4.556 23 C -0.557 4.557 24 C -0.558 4.558 25 C -0.109 4.109 26 C -0.121 4.121 27 C -0.267 4.267 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.133 0.867 36 H 0.217 0.783 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.141 0.859 51 H 0.139 0.861 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.166 -0.917 0.704 1.642 hybrid contribution -0.874 -0.540 -0.380 1.095 sum -2.040 -1.457 0.324 2.528 Atomic orbital electron populations 1.21795 0.92391 1.03181 1.03706 1.22867 0.96138 0.81432 1.01726 1.86081 1.18769 1.29958 1.87909 1.18651 0.82405 0.93285 0.92511 1.21074 0.93792 0.98318 1.12916 1.20722 0.94953 0.95663 0.95301 1.19515 0.96307 0.90953 1.12434 1.24727 0.92087 1.11216 0.89283 1.86568 1.82072 1.49122 1.16064 0.85802 0.80428 0.75750 0.81085 1.17703 1.17676 1.17323 1.18362 0.90085 0.84593 0.91839 1.86275 1.35170 1.11334 1.87386 1.21697 0.90783 0.82873 1.02395 1.19420 1.00679 0.94507 0.94056 1.21137 0.98133 0.96021 0.97172 1.21061 0.96848 0.94905 0.98193 1.27461 1.05328 1.13293 0.94181 0.78184 0.66029 0.63315 0.67350 1.26123 1.11316 1.13587 1.04605 1.26135 1.09892 1.04692 1.15017 1.26137 1.09873 1.04698 1.15049 1.21071 0.96791 0.94867 0.98207 1.21139 0.97905 0.95861 0.97230 1.20437 0.93921 0.96496 1.15822 0.90078 0.91393 0.91387 0.91701 0.91698 0.84983 0.85060 0.86736 0.78285 0.90882 0.90929 0.86175 0.85945 0.91181 0.91036 0.91174 0.91002 0.90968 0.91191 0.91171 0.90975 0.90991 0.85927 0.86132 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.26 10.28 37.16 0.38 0.64 16 2 C 0.05 -0.03 5.46 37.16 0.20 0.17 16 3 O -0.31 -0.71 10.13 -19.42 -0.20 -0.91 16 4 C 0.18 0.44 6.68 -39.24 -0.26 0.18 16 5 C -0.24 -0.31 9.04 -39.41 -0.36 -0.67 16 6 C -0.05 -0.06 8.65 -39.63 -0.34 -0.40 16 7 C -0.19 -0.43 5.27 -104.45 -0.55 -0.98 16 8 C -0.06 -0.10 2.37 36.00 0.09 -0.02 16 9 O -0.53 -1.28 12.88 -35.23 -0.45 -1.74 16 10 Si 0.95 0.41 25.49 -169.99 -4.33 -3.92 16 11 H -0.25 0.03 6.73 56.52 0.38 0.41 16 12 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 13 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 14 C 0.20 0.60 6.66 -39.24 -0.26 0.34 16 15 O -0.29 -1.00 9.45 -19.42 -0.18 -1.18 16 16 C 0.10 0.14 4.87 36.01 0.18 0.31 16 17 C -0.09 -0.18 5.51 -104.62 -0.58 -0.76 16 18 C -0.11 -0.18 9.70 -39.58 -0.38 -0.56 16 19 C -0.09 -0.09 9.29 -39.58 -0.37 -0.45 16 20 C -0.36 -0.16 4.59 -39.58 -0.18 -0.34 16 21 Si 1.06 -2.17 12.32 -169.99 -2.09 -4.26 16 22 C -0.45 0.55 8.65 101.05 0.87 1.42 16 23 C -0.45 0.60 8.53 101.05 0.86 1.46 16 24 C -0.45 0.57 8.53 101.05 0.86 1.43 16 25 C -0.09 -0.10 9.29 -39.58 -0.37 -0.47 16 26 C -0.10 -0.20 9.70 -39.59 -0.38 -0.58 16 27 C -0.25 -0.64 8.97 -39.29 -0.35 -0.99 16 28 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 29 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 30 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 31 H 0.06 -0.10 7.66 -51.93 -0.40 -0.50 16 32 H 0.06 -0.10 7.66 -51.93 -0.40 -0.50 16 33 H 0.13 -0.10 6.29 -52.49 -0.33 -0.43 16 34 H 0.13 -0.07 4.88 -52.48 -0.26 -0.33 16 35 H 0.11 0.23 7.83 -51.92 -0.41 -0.17 16 36 H 0.37 -0.41 8.70 45.56 0.40 -0.02 16 37 H 0.07 0.03 7.59 -51.93 -0.39 -0.37 16 38 H 0.07 0.01 7.61 -51.93 -0.40 -0.38 16 39 H 0.12 0.04 8.06 -52.49 -0.42 -0.39 16 40 H 0.12 -0.13 7.43 -52.49 -0.39 -0.52 16 41 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 42 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 43 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 44 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 45 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 46 H 0.07 -0.11 7.69 -51.93 -0.40 -0.51 16 47 H 0.07 -0.10 7.69 -51.93 -0.40 -0.50 16 48 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 49 H 0.07 -0.06 7.96 -51.92 -0.41 -0.47 16 50 H 0.12 -0.10 7.43 -52.48 -0.39 -0.49 16 51 H 0.12 0.10 8.06 -52.49 -0.42 -0.33 16 52 H 0.14 0.20 6.30 -52.48 -0.33 -0.13 16 LS Contribution 424.31 15.07 6.39 6.39 Total: 0.00 -6.39 424.31 -9.73 -16.12 By element: Atomic # 1 Polarization: -2.30 SS G_CDS: -7.92 Total: -10.22 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -0.94 Total: -0.28 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: -0.83 Total: -3.83 kcal Atomic # 14 Polarization: -1.75 SS G_CDS: -6.43 Total: -8.18 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -6.39 -9.73 -16.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26952_9276060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.946 kcal (2) G-P(sol) polarization free energy of solvation -6.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds