Wall clock time and date at job start Tue Mar 9 2021 17:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35897 * 117.00481 * 180.02562 * 3 2 1 5 5 C 1.38757 * 120.02287 * 359.97438 * 4 3 2 6 6 C 1.38193 * 120.05390 * 179.97438 * 5 4 3 7 7 C 1.38155 * 120.11004 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.97034 * 180.02562 * 7 6 5 9 9 O 1.42900 * 109.47272 * 104.99627 * 8 7 6 10 10 Si 1.86298 * 109.47504 * 344.99201 * 8 7 6 11 11 H 1.48503 * 109.46746 * 60.00101 * 10 8 7 12 12 H 1.48500 * 109.47324 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47045 * 300.00582 * 10 8 7 14 14 C 1.38790 * 120.05167 * 359.97313 * 7 6 5 15 15 O 1.35900 * 120.02321 * 180.02562 * 14 7 6 16 16 C 1.42900 * 116.99698 * 180.02562 * 15 14 7 17 17 C 1.50712 * 109.47109 * 179.97438 * 16 15 14 18 18 C 1.38237 * 119.99462 * 269.72924 * 17 16 15 19 19 C 1.38239 * 119.99470 * 179.76775 * 18 17 16 20 20 C 1.38230 * 119.99857 * 0.50095 * 19 18 17 21 21 Si 1.86806 * 120.00056 * 179.72687 * 20 19 18 22 22 C 1.86298 * 109.47272 * 270.02353 * 21 20 19 23 23 C 1.86305 * 109.46873 * 30.02498 * 21 20 19 24 24 C 1.86299 * 109.47289 * 150.02281 * 21 20 19 25 25 C 1.38238 * 120.00259 * 359.75129 * 20 19 18 26 26 C 1.38230 * 120.00000 * 89.99796 * 17 16 15 27 27 C 1.38610 * 119.94721 * 359.74859 * 14 7 6 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 33 33 H 1.07999 * 119.97216 * 359.97438 * 5 4 3 34 34 H 1.08007 * 119.94479 * 179.97438 * 6 5 4 35 35 H 1.09011 * 109.46859 * 224.99262 * 8 7 6 36 36 H 0.96697 * 114.00346 * 299.99816 * 9 8 7 37 37 H 1.08997 * 109.47217 * 299.99449 * 16 15 14 38 38 H 1.08996 * 109.47673 * 60.00102 * 16 15 14 39 39 H 1.07997 * 120.00362 * 359.97438 * 18 17 16 40 40 H 1.07999 * 119.99716 * 180.23019 * 19 18 17 41 41 H 1.09003 * 109.47002 * 59.99648 * 22 21 20 42 42 H 1.09000 * 109.47076 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.46920 * 300.00041 * 22 21 20 44 44 H 1.09000 * 109.47038 * 59.99955 * 23 21 20 45 45 H 1.09002 * 109.47155 * 180.02562 * 23 21 20 46 46 H 1.09001 * 109.46555 * 299.99646 * 23 21 20 47 47 H 1.09002 * 109.47047 * 59.99871 * 24 21 20 48 48 H 1.09000 * 109.47444 * 180.02562 * 24 21 20 49 49 H 1.09008 * 109.46941 * 300.00293 * 24 21 20 50 50 H 1.08003 * 120.00073 * 179.97438 * 25 20 19 51 51 H 1.08000 * 119.99835 * 0.02562 * 26 17 16 52 52 H 1.08005 * 120.05431 * 180.25384 * 27 14 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1993 0.4253 -0.0005 6 6 5.5694 0.6057 -0.0016 7 6 6.1006 1.8811 -0.0022 8 6 7.5951 2.0742 -0.0039 9 8 8.0214 2.4810 -1.3058 10 14 8.4290 0.4712 0.4498 11 1 8.0638 -0.5741 -0.5397 12 1 9.9018 0.6617 0.4487 13 1 7.9860 0.0485 1.8026 14 6 5.2588 2.9846 -0.0022 15 8 5.7819 4.2389 -0.0033 16 6 4.8564 5.3277 -0.0027 17 6 5.6137 6.6307 -0.0035 18 6 5.9569 7.2312 1.1934 19 6 6.6557 8.4239 1.1928 20 6 7.0021 9.0213 -0.0047 21 14 7.9398 10.6370 -0.0056 22 6 6.7324 12.0558 -0.0048 23 6 9.0123 10.7334 1.5147 24 6 9.0099 10.7332 -1.5275 25 6 6.6543 8.4235 -1.2015 26 6 5.9600 7.2281 -1.2009 27 6 3.8842 2.8062 -0.0070 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7865 -0.5726 0.0003 34 1 6.2261 -0.2518 -0.0012 35 1 7.8632 2.8415 0.7224 36 1 7.8151 1.8446 -2.0040 37 1 4.2286 5.2714 -0.8920 38 1 4.2305 5.2722 0.8879 39 1 5.6821 6.7668 2.1290 40 1 6.9272 8.8912 2.1279 41 1 6.1062 11.9995 0.8857 42 1 7.2795 12.9985 -0.0058 43 1 6.1049 11.9993 -0.8943 44 1 9.7187 9.9033 1.5142 45 1 9.5591 11.6763 1.5145 46 1 8.3861 10.6772 2.4052 47 1 8.3824 10.6767 -2.4170 48 1 9.5574 11.6757 -1.5279 49 1 9.7164 9.9030 -1.5280 50 1 6.9246 8.8905 -2.1371 51 1 5.6876 6.7613 -2.1359 52 1 3.2275 3.6637 -0.0112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26952_9276060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:17:12 Heat of formation + Delta-G solvation = -96.820583 kcal Electronic energy + Delta-G solvation = -29378.298144 eV Core-core repulsion = 25431.991973 eV Total energy + Delta-G solvation = -3946.306170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.172 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.78161 -40.47606 -39.71660 -38.34090 -37.02056 -33.27020 -33.02749 -31.88858 -31.40342 -30.93699 -29.43443 -28.29343 -28.26803 -27.43849 -26.32429 -24.83088 -23.49279 -23.37849 -22.24928 -21.86717 -20.01442 -18.41010 -17.97175 -17.40175 -17.30074 -17.28861 -16.96809 -16.60097 -16.08679 -15.94042 -15.48546 -15.41410 -15.20874 -14.79979 -14.36218 -14.33852 -14.23153 -14.05904 -14.04428 -13.87230 -13.73171 -13.69965 -13.44738 -13.26237 -13.13903 -13.11994 -13.06181 -12.96636 -12.95536 -12.53651 -12.24474 -12.19548 -12.12771 -11.96889 -11.86919 -11.58158 -11.51032 -10.92360 -10.78028 -10.75703 -10.33937 -9.81222 -9.73070 -9.69146 -9.12071 0.14964 0.15650 0.27912 0.51672 1.17514 1.42615 1.53264 1.83410 1.91259 1.94996 2.02661 2.09825 2.32401 2.53335 2.66848 3.01741 3.57675 3.59833 3.73588 3.78086 3.82398 3.98034 4.01804 4.02323 4.09205 4.17654 4.21673 4.27032 4.33046 4.34462 4.42906 4.52482 4.64866 4.70400 4.83109 4.84963 4.85057 4.88886 4.89505 4.89676 4.90018 4.91061 4.98673 4.99502 5.14980 5.15268 5.21872 5.25243 5.39438 5.46916 5.56102 5.59290 5.59466 5.68102 5.70711 6.11654 6.19763 6.36124 6.76954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.331 6.331 4 C 0.166 3.834 5 C -0.241 4.241 6 C -0.049 4.049 7 C -0.200 4.200 8 C -0.070 4.070 9 O -0.553 6.553 10 Si 0.987 3.013 11 H -0.236 1.236 12 H -0.276 1.276 13 H -0.255 1.255 14 C 0.183 3.817 15 O -0.306 6.306 16 C 0.098 3.902 17 C -0.102 4.102 18 C -0.122 4.122 19 C -0.103 4.103 20 C -0.374 4.374 21 Si 1.127 2.873 22 C -0.461 4.461 23 C -0.462 4.462 24 C -0.463 4.463 25 C -0.103 4.103 26 C -0.121 4.121 27 C -0.258 4.258 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.101 0.899 36 H 0.385 0.615 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.139 0.861 51 H 0.124 0.876 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.712 -1.497 0.149 2.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.245 6.245 4 C 0.120 3.880 5 C -0.260 4.260 6 C -0.067 4.067 7 C -0.201 4.201 8 C -0.180 4.180 9 O -0.360 6.360 10 Si 0.810 3.190 11 H -0.159 1.159 12 H -0.201 1.201 13 H -0.179 1.179 14 C 0.136 3.864 15 O -0.219 6.219 16 C 0.024 3.976 17 C -0.102 4.102 18 C -0.140 4.140 19 C -0.121 4.121 20 C -0.413 4.413 21 Si 1.314 2.686 22 C -0.567 4.567 23 C -0.569 4.569 24 C -0.570 4.570 25 C -0.121 4.121 26 C -0.139 4.139 27 C -0.277 4.277 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.119 0.881 36 H 0.233 0.767 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.145 0.855 40 H 0.159 0.841 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.157 0.843 51 H 0.142 0.858 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.137 -1.613 0.696 2.093 hybrid contribution -0.918 -0.304 -0.389 1.042 sum -2.055 -1.918 0.307 2.827 Atomic orbital electron populations 1.21822 0.91815 1.04196 1.03103 1.23116 0.96656 0.80398 1.02762 1.86066 1.18672 1.31792 1.87936 1.18813 0.82827 0.93572 0.92829 1.21349 0.93711 0.99012 1.11893 1.20957 0.95321 0.95752 0.94627 1.19716 0.96542 0.91306 1.12565 1.24919 0.92121 1.12130 0.88791 1.86522 1.82238 1.50373 1.16863 0.85215 0.78253 0.74628 0.80912 1.15903 1.20083 1.17877 1.18565 0.90497 0.84702 0.92634 1.86244 1.36110 1.11887 1.87649 1.21752 0.90618 0.82311 1.02958 1.19588 1.01289 0.94896 0.94447 1.21372 0.98576 0.96647 0.97410 1.21394 0.96589 0.94773 0.99312 1.28102 1.04981 1.14430 0.93745 0.77184 0.64384 0.60924 0.66127 1.26257 1.11666 1.14339 1.04455 1.26273 1.10164 1.04750 1.15725 1.26289 1.10162 1.04734 1.15825 1.21384 0.96627 0.94744 0.99343 1.21351 0.98558 0.96585 0.97430 1.20545 0.93933 0.97050 1.16165 0.88227 0.91993 0.91986 0.90603 0.90620 0.82768 0.83082 0.88065 0.76688 0.90436 0.90191 0.85468 0.84130 0.91322 0.90553 0.91380 0.91441 0.90535 0.90851 0.90935 0.90531 0.91485 0.84296 0.85809 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.56 10.28 71.98 0.74 1.30 16 2 C 0.04 -0.08 5.46 71.98 0.39 0.31 16 3 O -0.33 -1.64 10.13 -92.39 -0.94 -2.58 16 4 C 0.17 0.90 6.68 22.49 0.15 1.05 16 5 C -0.24 -0.47 9.04 22.38 0.20 -0.27 16 6 C -0.05 -0.09 8.65 22.24 0.19 0.10 16 7 C -0.20 -1.05 5.27 -19.75 -0.10 -1.16 16 8 C -0.07 -0.30 2.37 71.24 0.17 -0.13 16 9 O -0.55 -3.24 12.88 -148.98 -1.92 -5.16 16 10 Si 0.99 0.51 25.49 68.60 1.75 2.26 16 11 H -0.24 0.54 6.73 99.48 0.67 1.21 16 12 H -0.28 -1.14 7.11 99.48 0.71 -0.44 16 13 H -0.25 -0.33 7.11 99.48 0.71 0.38 16 14 C 0.18 1.40 6.66 22.49 0.15 1.55 16 15 O -0.31 -2.77 9.45 -92.42 -0.87 -3.64 16 16 C 0.10 0.48 4.87 71.24 0.35 0.82 16 17 C -0.10 -0.63 5.51 -19.86 -0.11 -0.74 16 18 C -0.12 -0.59 9.70 22.27 0.22 -0.38 16 19 C -0.10 -0.26 9.29 22.27 0.21 -0.06 16 20 C -0.37 -0.50 4.59 22.27 0.10 -0.40 16 21 Si 1.13 -4.97 12.32 68.60 0.85 -4.12 16 22 C -0.46 1.33 8.65 113.37 0.98 2.31 16 23 C -0.46 1.44 8.53 113.37 0.97 2.40 16 24 C -0.46 1.30 8.53 113.37 0.97 2.27 16 25 C -0.10 -0.32 9.29 22.27 0.21 -0.11 16 26 C -0.12 -0.67 9.70 22.27 0.22 -0.46 16 27 C -0.26 -1.69 8.97 22.46 0.20 -1.49 16 28 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 29 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.08 -0.32 7.66 -2.39 -0.02 -0.34 16 32 H 0.08 -0.31 7.66 -2.39 -0.02 -0.33 16 33 H 0.15 -0.49 6.29 -2.91 -0.02 -0.51 16 34 H 0.15 -0.41 4.88 -2.91 -0.01 -0.42 16 35 H 0.10 0.62 7.83 -2.38 -0.02 0.61 16 36 H 0.38 -0.65 8.70 -74.06 -0.64 -1.30 16 37 H 0.08 0.24 7.59 -2.39 -0.02 0.22 16 38 H 0.08 0.20 7.61 -2.39 -0.02 0.18 16 39 H 0.13 0.28 8.06 -2.91 -0.02 0.26 16 40 H 0.14 -0.29 7.43 -2.91 -0.02 -0.31 16 41 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 42 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 43 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 44 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 45 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 46 H 0.07 -0.27 7.69 -2.39 -0.02 -0.29 16 47 H 0.07 -0.23 7.69 -2.39 -0.02 -0.25 16 48 H 0.08 -0.27 7.96 -2.39 -0.02 -0.29 16 49 H 0.07 -0.10 7.96 -2.38 -0.02 -0.12 16 50 H 0.14 -0.18 7.43 -2.91 -0.02 -0.20 16 51 H 0.12 0.45 8.06 -2.91 -0.02 0.42 16 52 H 0.14 0.68 6.30 -2.91 -0.02 0.66 16 Total: 0.00 -15.41 424.31 6.04 -9.37 By element: Atomic # 1 Polarization: -4.03 SS G_CDS: 0.98 Total: -3.05 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 6.19 Total: 6.92 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -3.73 Total: -11.38 kcal Atomic # 14 Polarization: -4.46 SS G_CDS: 2.59 Total: -1.86 kcal Total: -15.41 6.04 -9.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26952_9276060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.451 kcal (2) G-P(sol) polarization free energy of solvation -15.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds