Wall clock time and date at job start Tue Mar 9 2021 17:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47630 * 2 1 4 4 O 1.42890 * 109.47540 * 179.97438 * 3 2 1 5 5 C 1.35896 * 117.00490 * 180.02562 * 4 3 2 6 6 C 1.38611 * 120.03468 * 180.27574 * 5 4 3 7 7 C 1.38657 * 119.89241 * 180.25189 * 6 5 4 8 8 O 1.35901 * 120.02502 * 179.75041 * 7 6 5 9 9 C 1.42895 * 117.00135 * 359.72668 * 8 7 6 10 10 C 1.53001 * 109.47112 * 180.02562 * 9 8 7 11 11 H 1.08994 * 112.90392 * 316.24638 * 10 9 8 12 12 C 1.54053 * 113.61362 * 87.61308 * 10 9 8 13 13 C 1.53785 * 87.07515 * 89.07445 * 12 10 9 14 14 O 1.42894 * 113.68983 * 270.86776 * 13 12 10 15 15 C 1.42901 * 113.99870 * 162.74827 * 14 13 12 16 16 C 1.52998 * 113.61420 * 139.97596 * 13 12 10 17 17 F 1.39909 * 109.47004 * 327.19269 * 16 13 12 18 18 F 1.39897 * 109.47360 * 87.18996 * 16 13 12 19 19 F 1.39897 * 109.47584 * 207.19172 * 16 13 12 20 20 C 1.53778 * 113.61545 * 184.99797 * 10 9 8 21 21 C 1.38747 * 119.94302 * 359.47380 * 7 6 5 22 22 C 1.50705 * 119.96822 * 180.27801 * 21 7 6 23 23 O 1.42897 * 109.47120 * 284.99413 * 22 21 7 24 24 Si 1.86309 * 109.46808 * 164.99997 * 22 21 7 25 25 C 1.38191 * 120.05700 * 0.25054 * 21 7 6 26 26 C 1.38156 * 120.11106 * 0.02679 * 25 21 7 27 27 H 1.09002 * 109.46807 * 59.99676 * 1 2 3 28 28 H 1.08995 * 109.47333 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47013 * 300.00268 * 1 2 3 30 30 H 1.09001 * 109.47447 * 239.99955 * 2 1 3 31 31 H 1.09001 * 109.47328 * 120.00260 * 2 1 3 32 32 H 1.09010 * 109.46919 * 59.99641 * 3 2 1 33 33 H 1.09001 * 109.46977 * 300.00475 * 3 2 1 34 34 H 1.08001 * 120.05402 * 359.97438 * 6 5 4 35 35 H 1.08997 * 109.47466 * 59.99433 * 9 8 7 36 36 H 1.09005 * 109.46809 * 299.99632 * 9 8 7 37 37 H 1.08990 * 113.61969 * 334.52747 * 12 10 9 38 38 H 1.09005 * 113.68508 * 203.62940 * 12 10 9 39 39 H 1.08998 * 109.47013 * 304.83895 * 15 14 13 40 40 H 1.08998 * 109.47339 * 64.84089 * 15 14 13 41 41 H 1.09007 * 109.46977 * 184.84134 * 15 14 13 42 42 H 1.08995 * 113.61968 * 156.33111 * 20 10 9 43 43 H 1.09002 * 113.61530 * 25.50988 * 20 10 9 44 44 H 1.08990 * 109.47356 * 44.99978 * 22 21 7 45 45 H 0.96699 * 114.00323 * 300.00756 * 23 22 21 46 46 H 1.48493 * 109.99634 * 179.97438 * 24 22 21 47 47 H 1.48497 * 110.00136 * 301.31532 * 24 22 21 48 48 H 1.08007 * 119.94612 * 179.97438 * 25 21 7 49 49 H 1.08001 * 119.97657 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0861 2.6532 0.0012 6 6 5.4703 2.7265 -0.0039 7 6 6.0968 3.9634 0.0020 8 8 7.4538 4.0383 0.0021 9 6 8.1717 2.8028 0.0019 10 6 9.6752 3.0866 0.0027 11 1 9.9578 3.8782 -0.6912 12 6 10.2700 3.2584 1.4133 13 6 10.5019 1.7381 1.4149 14 8 9.3946 0.9890 1.9194 15 6 9.4261 -0.3977 1.5756 16 6 11.8349 1.3221 2.0401 17 9 12.7960 2.3071 1.7877 18 9 11.6749 1.1701 3.4216 19 9 12.2530 0.1090 1.4829 20 6 10.5410 1.8217 -0.1201 21 6 5.3373 5.1245 0.0020 22 6 6.0177 6.4692 0.0022 23 8 6.5437 6.7367 1.3036 24 14 4.7841 7.7893 -0.4524 25 6 3.9574 5.0489 0.0014 26 6 3.3307 3.8176 0.0013 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 6.0598 1.8215 -0.0081 35 1 7.9100 2.2306 -0.8880 36 1 7.9100 2.2304 0.8919 37 1 9.5444 3.5901 2.1558 38 1 11.1914 3.8406 1.4321 39 1 9.5050 -0.5020 0.4935 40 1 10.2862 -0.8703 2.0499 41 1 8.5109 -0.8786 1.9212 42 1 11.5363 2.0110 -0.5220 43 1 10.0352 0.9928 -0.6155 44 1 6.8301 6.4654 -0.7244 45 1 5.8751 6.7551 2.0019 46 1 5.4426 9.1202 -0.4553 47 1 4.2061 7.5053 -1.7905 48 1 3.3679 5.9539 0.0019 49 1 2.2522 3.7611 0.0012 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26953_17321600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:42:49 Heat of formation + Delta-G solvation = -246.097106 kcal Electronic energy + Delta-G solvation = -36428.241442 eV Core-core repulsion = 31102.227943 eV Total energy + Delta-G solvation = -5326.013499 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.158 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.14525 -48.69215 -48.57797 -41.89474 -41.30144 -40.00799 -38.35492 -37.17987 -36.86909 -34.94688 -31.96587 -31.47552 -30.21621 -28.32368 -27.82289 -27.33736 -26.85876 -26.01127 -24.06784 -23.31724 -22.49289 -22.07495 -20.60875 -19.97873 -19.59784 -19.42416 -19.18996 -18.19014 -17.57072 -17.43914 -17.34232 -17.20122 -16.85299 -16.57352 -16.44974 -15.99693 -15.74794 -15.56328 -15.50286 -15.46336 -15.16771 -15.11599 -15.05469 -14.90660 -14.76959 -14.70242 -14.41466 -14.26335 -13.93174 -13.89730 -13.78906 -13.42141 -13.33182 -13.21015 -12.99955 -12.81099 -12.58879 -12.52236 -12.28096 -12.10480 -12.05125 -11.86429 -11.83928 -11.72694 -11.67146 -11.47485 -10.86032 -10.26079 -9.60861 -9.01374 -4.99016 0.26734 0.39477 1.38336 1.57325 1.70093 1.92618 2.01177 2.04666 2.15704 2.55931 2.64034 2.64805 2.88109 3.25391 3.36972 3.47851 3.61552 3.63873 3.70168 3.79993 3.83608 3.89108 4.04404 4.05502 4.11160 4.13977 4.17522 4.21445 4.25565 4.27738 4.35653 4.36014 4.38661 4.45413 4.49330 4.57763 4.59309 4.60536 4.68720 4.72474 4.77710 4.92705 4.94015 5.00011 5.06913 5.15455 5.29772 5.32039 5.54846 5.62460 6.26678 6.44058 6.74661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.057 3.943 4 O -0.314 6.314 5 C 0.178 3.822 6 C -0.246 4.246 7 C 0.198 3.802 8 O -0.295 6.295 9 C 0.067 3.933 10 C -0.097 4.097 11 H 0.106 0.894 12 C -0.110 4.110 13 C 0.039 3.961 14 O -0.331 6.331 15 C 0.010 3.990 16 C 0.437 3.563 17 F -0.175 7.175 18 F -0.174 7.174 19 F -0.182 7.182 20 C -0.143 4.143 21 C -0.192 4.192 22 C -0.048 4.048 23 O -0.536 6.536 24 Si 0.677 3.323 25 C -0.035 4.035 26 C -0.243 4.243 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.137 0.863 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.374 0.626 46 H -0.254 1.254 47 H -0.257 1.257 48 H 0.137 0.863 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 -1.489 -0.984 5.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.018 4.018 4 O -0.227 6.227 5 C 0.132 3.868 6 C -0.265 4.265 7 C 0.151 3.849 8 O -0.208 6.208 9 C -0.008 4.008 10 C -0.115 4.115 11 H 0.124 0.876 12 C -0.147 4.147 13 C -0.004 4.004 14 O -0.249 6.249 15 C -0.086 4.086 16 C 0.382 3.618 17 F -0.156 7.156 18 F -0.155 7.155 19 F -0.164 7.164 20 C -0.181 4.181 21 C -0.193 4.193 22 C -0.159 4.159 23 O -0.341 6.341 24 Si 0.579 3.421 25 C -0.053 4.053 26 C -0.262 4.262 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.155 0.845 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.134 0.866 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.120 0.880 42 H 0.131 0.869 43 H 0.112 0.888 44 H 0.129 0.871 45 H 0.221 0.779 46 H -0.179 1.179 47 H -0.182 1.182 48 H 0.154 0.846 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.651 -0.805 -1.765 5.039 hybrid contribution 0.693 -1.041 -0.182 1.264 sum -3.958 -1.846 -1.947 4.782 Atomic orbital electron populations 1.21697 0.93943 1.02842 1.02345 1.21501 0.96284 0.94558 1.03848 1.22973 0.77772 0.99227 1.01809 1.86056 1.21872 1.26852 1.87911 1.18650 0.91408 0.84252 0.92535 1.20424 0.92792 0.97613 1.15666 1.18330 0.82407 0.92136 0.92044 1.86124 1.14713 1.32378 1.87556 1.22789 0.89945 0.85153 1.02915 1.22092 0.92466 0.98692 0.98275 0.87596 1.23299 1.03941 0.89071 0.98422 1.24047 0.83823 0.96938 0.95563 1.88095 1.40251 1.21121 1.75451 1.23148 1.03963 0.80715 1.00781 1.21177 0.88192 0.75033 0.77364 1.93184 1.66466 1.62025 1.93932 1.93220 1.95646 1.95414 1.31229 1.93189 1.91815 1.46199 1.85160 1.23598 1.02637 0.99239 0.92601 1.19563 0.92858 0.94444 1.12483 1.24781 1.04325 0.97711 0.89050 1.86537 1.37790 1.93621 1.16137 0.95190 0.83425 0.78002 0.85499 1.20561 0.92417 0.97215 0.95082 1.21105 1.00378 0.91810 1.12876 0.92269 0.91517 0.92211 0.90781 0.90712 0.91594 0.91697 0.84499 0.91517 0.89578 0.88102 0.86553 0.92638 0.92787 0.87967 0.86924 0.88760 0.87144 0.77902 1.17934 1.18216 0.84583 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.39 9.91 37.16 0.37 0.76 16 2 C -0.12 0.20 6.30 -26.73 -0.17 0.03 16 3 C 0.06 -0.06 4.74 37.16 0.18 0.12 16 4 O -0.31 -0.54 10.13 -19.41 -0.20 -0.74 16 5 C 0.18 0.32 6.68 -39.24 -0.26 0.06 16 6 C -0.25 -0.50 8.97 -39.29 -0.35 -0.85 16 7 C 0.20 0.46 6.66 -39.24 -0.26 0.20 16 8 O -0.30 -0.67 9.46 -19.43 -0.18 -0.85 16 9 C 0.07 0.00 4.33 37.16 0.16 0.16 16 10 C -0.10 0.11 4.21 -89.66 -0.38 -0.27 16 11 H 0.11 -0.15 8.14 -51.93 -0.42 -0.57 16 12 C -0.11 0.05 6.90 -25.77 -0.18 -0.13 16 13 C 0.04 0.00 0.84 -89.80 -0.08 -0.08 16 14 O -0.33 -0.20 8.37 -35.23 -0.29 -0.49 16 15 C 0.01 -0.01 10.30 101.05 1.04 1.03 16 16 C 0.44 0.66 2.52 37.16 0.09 0.75 16 17 F -0.17 -0.29 15.81 2.25 0.04 -0.25 16 18 F -0.17 -0.57 17.10 2.25 0.04 -0.53 16 19 F -0.18 -0.31 15.39 2.25 0.03 -0.27 16 20 C -0.14 0.28 6.50 -25.92 -0.17 0.11 16 21 C -0.19 -0.26 5.27 -104.45 -0.55 -0.82 16 22 C -0.05 -0.05 2.37 36.01 0.09 0.03 16 23 O -0.54 -0.82 12.88 -35.23 -0.45 -1.28 16 24 Si 0.68 -0.26 29.91 -169.99 -5.08 -5.35 16 25 C -0.04 0.00 8.65 -39.63 -0.34 -0.34 16 26 C -0.24 -0.07 9.04 -39.40 -0.36 -0.43 16 27 H 0.06 -0.17 8.14 -51.93 -0.42 -0.59 16 28 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 29 H 0.06 -0.17 8.14 -51.93 -0.42 -0.59 16 30 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 31 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.07 -0.13 7.66 -51.92 -0.40 -0.52 16 33 H 0.06 -0.12 7.66 -51.93 -0.40 -0.51 16 34 H 0.14 0.15 6.30 -52.49 -0.33 -0.18 16 35 H 0.07 -0.07 7.65 -51.93 -0.40 -0.46 16 36 H 0.09 0.03 5.66 -51.93 -0.29 -0.26 16 37 H 0.10 0.05 8.10 -51.93 -0.42 -0.37 16 38 H 0.12 -0.14 7.02 -51.93 -0.36 -0.51 16 39 H 0.06 -0.14 6.55 -51.93 -0.34 -0.48 16 40 H 0.05 -0.03 6.69 -51.93 -0.35 -0.38 16 41 H 0.10 -0.25 8.14 -51.93 -0.42 -0.67 16 42 H 0.11 -0.31 8.04 -51.93 -0.42 -0.72 16 43 H 0.09 -0.27 6.63 -51.93 -0.34 -0.61 16 44 H 0.11 0.25 7.82 -51.93 -0.41 -0.16 16 45 H 0.37 -0.89 8.70 45.56 0.40 -0.50 16 46 H -0.25 -0.72 7.11 56.52 0.40 -0.32 16 47 H -0.26 -0.51 7.11 56.52 0.40 -0.11 16 48 H 0.14 -0.39 5.12 -52.48 -0.27 -0.66 16 49 H 0.13 -0.23 6.29 -52.49 -0.33 -0.56 16 LS Contribution 400.36 15.07 6.03 6.03 Total: 0.00 -6.72 400.36 -8.06 -14.78 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: -6.82 Total: -11.39 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.17 Total: 0.34 kcal Atomic # 8 Polarization: -2.23 SS G_CDS: -1.13 Total: -3.36 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.11 Total: -1.05 kcal Atomic # 14 Polarization: -0.26 SS G_CDS: -5.08 Total: -5.35 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -6.72 -8.06 -14.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26953_17321600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -231.317 kcal (2) G-P(sol) polarization free energy of solvation -6.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds