Wall clock time and date at job start Tue Mar 9 2021 17:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47630 * 2 1 4 4 O 1.42890 * 109.47540 * 179.97438 * 3 2 1 5 5 C 1.35896 * 117.00490 * 180.02562 * 4 3 2 6 6 C 1.38611 * 120.03468 * 180.27574 * 5 4 3 7 7 C 1.38657 * 119.89241 * 180.25189 * 6 5 4 8 8 O 1.35901 * 120.02502 * 179.75041 * 7 6 5 9 9 C 1.42895 * 117.00135 * 359.72668 * 8 7 6 10 10 C 1.53001 * 109.47112 * 180.02562 * 9 8 7 11 11 H 1.08994 * 112.90392 * 316.24638 * 10 9 8 12 12 C 1.54053 * 113.61362 * 87.61308 * 10 9 8 13 13 C 1.53785 * 87.07515 * 89.07445 * 12 10 9 14 14 O 1.42894 * 113.68983 * 270.86776 * 13 12 10 15 15 C 1.42901 * 113.99870 * 162.74827 * 14 13 12 16 16 C 1.52998 * 113.61420 * 139.97596 * 13 12 10 17 17 F 1.39909 * 109.47004 * 327.19269 * 16 13 12 18 18 F 1.39897 * 109.47360 * 87.18996 * 16 13 12 19 19 F 1.39897 * 109.47584 * 207.19172 * 16 13 12 20 20 C 1.53778 * 113.61545 * 184.99797 * 10 9 8 21 21 C 1.38747 * 119.94302 * 359.47380 * 7 6 5 22 22 C 1.50705 * 119.96822 * 180.27801 * 21 7 6 23 23 O 1.42897 * 109.47120 * 284.99413 * 22 21 7 24 24 Si 1.86309 * 109.46808 * 164.99997 * 22 21 7 25 25 C 1.38191 * 120.05700 * 0.25054 * 21 7 6 26 26 C 1.38156 * 120.11106 * 0.02679 * 25 21 7 27 27 H 1.09002 * 109.46807 * 59.99676 * 1 2 3 28 28 H 1.08995 * 109.47333 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47013 * 300.00268 * 1 2 3 30 30 H 1.09001 * 109.47447 * 239.99955 * 2 1 3 31 31 H 1.09001 * 109.47328 * 120.00260 * 2 1 3 32 32 H 1.09010 * 109.46919 * 59.99641 * 3 2 1 33 33 H 1.09001 * 109.46977 * 300.00475 * 3 2 1 34 34 H 1.08001 * 120.05402 * 359.97438 * 6 5 4 35 35 H 1.08997 * 109.47466 * 59.99433 * 9 8 7 36 36 H 1.09005 * 109.46809 * 299.99632 * 9 8 7 37 37 H 1.08990 * 113.61969 * 334.52747 * 12 10 9 38 38 H 1.09005 * 113.68508 * 203.62940 * 12 10 9 39 39 H 1.08998 * 109.47013 * 304.83895 * 15 14 13 40 40 H 1.08998 * 109.47339 * 64.84089 * 15 14 13 41 41 H 1.09007 * 109.46977 * 184.84134 * 15 14 13 42 42 H 1.08995 * 113.61968 * 156.33111 * 20 10 9 43 43 H 1.09002 * 113.61530 * 25.50988 * 20 10 9 44 44 H 1.08990 * 109.47356 * 44.99978 * 22 21 7 45 45 H 0.96699 * 114.00323 * 300.00756 * 23 22 21 46 46 H 1.48493 * 109.99634 * 179.97438 * 24 22 21 47 47 H 1.48497 * 110.00136 * 301.31532 * 24 22 21 48 48 H 1.08007 * 119.94612 * 179.97438 * 25 21 7 49 49 H 1.08001 * 119.97657 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0861 2.6532 0.0012 6 6 5.4703 2.7265 -0.0039 7 6 6.0968 3.9634 0.0020 8 8 7.4538 4.0383 0.0021 9 6 8.1717 2.8028 0.0019 10 6 9.6752 3.0866 0.0027 11 1 9.9578 3.8782 -0.6912 12 6 10.2700 3.2584 1.4133 13 6 10.5019 1.7381 1.4149 14 8 9.3946 0.9890 1.9194 15 6 9.4261 -0.3977 1.5756 16 6 11.8349 1.3221 2.0401 17 9 12.7960 2.3071 1.7877 18 9 11.6749 1.1701 3.4216 19 9 12.2530 0.1090 1.4829 20 6 10.5410 1.8217 -0.1201 21 6 5.3373 5.1245 0.0020 22 6 6.0177 6.4692 0.0022 23 8 6.5437 6.7367 1.3036 24 14 4.7841 7.7893 -0.4524 25 6 3.9574 5.0489 0.0014 26 6 3.3307 3.8176 0.0013 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 6.0598 1.8215 -0.0081 35 1 7.9100 2.2306 -0.8880 36 1 7.9100 2.2304 0.8919 37 1 9.5444 3.5901 2.1558 38 1 11.1914 3.8406 1.4321 39 1 9.5050 -0.5020 0.4935 40 1 10.2862 -0.8703 2.0499 41 1 8.5109 -0.8786 1.9212 42 1 11.5363 2.0110 -0.5220 43 1 10.0352 0.9928 -0.6155 44 1 6.8301 6.4654 -0.7244 45 1 5.8751 6.7551 2.0019 46 1 5.4426 9.1202 -0.4553 47 1 4.2061 7.5053 -1.7905 48 1 3.3679 5.9539 0.0019 49 1 2.2522 3.7611 0.0012 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26953_17321600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:42:48 Heat of formation + Delta-G solvation = -241.432074 kcal Electronic energy + Delta-G solvation = -36428.039151 eV Core-core repulsion = 31102.227943 eV Total energy + Delta-G solvation = -5325.811208 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.158 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.28737 -48.81976 -48.75845 -41.90320 -41.29077 -40.03392 -38.39555 -37.18823 -36.87878 -34.83047 -32.00104 -31.49077 -30.23908 -28.24005 -27.73720 -27.37070 -26.78328 -26.04099 -24.08220 -23.28648 -22.50729 -22.02571 -20.60778 -20.02028 -19.65371 -19.55389 -19.25329 -18.23887 -17.60953 -17.42267 -17.30315 -17.19962 -16.87664 -16.56616 -16.46660 -15.99815 -15.75110 -15.67619 -15.60435 -15.54360 -15.21461 -15.12039 -15.08967 -14.97798 -14.93034 -14.75560 -14.45714 -14.28585 -13.90783 -13.85282 -13.79802 -13.34926 -13.26018 -13.13563 -12.89857 -12.73709 -12.54142 -12.45433 -12.26751 -12.11819 -12.05586 -11.81178 -11.76733 -11.75489 -11.62461 -11.42746 -10.84198 -10.32217 -9.66438 -9.06261 -4.98992 0.22675 0.34031 1.36068 1.49612 1.68082 1.93825 2.00526 2.05557 2.18186 2.53045 2.59078 2.60189 2.86424 3.27127 3.34308 3.46396 3.62809 3.64877 3.75782 3.86195 3.94607 3.95204 4.08913 4.15383 4.19154 4.21533 4.26557 4.27047 4.32086 4.34605 4.42137 4.47251 4.48166 4.55070 4.59051 4.63980 4.66452 4.67118 4.77114 4.79102 4.80702 4.98891 5.05219 5.12553 5.17054 5.26686 5.29650 5.34530 5.55013 5.68319 6.24895 6.41227 6.87168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.052 3.948 4 O -0.330 6.330 5 C 0.164 3.836 6 C -0.258 4.258 7 C 0.181 3.819 8 O -0.310 6.310 9 C 0.067 3.933 10 C -0.093 4.093 11 H 0.111 0.889 12 C -0.113 4.113 13 C 0.038 3.962 14 O -0.345 6.345 15 C 0.004 3.996 16 C 0.433 3.567 17 F -0.176 7.176 18 F -0.188 7.188 19 F -0.184 7.184 20 C -0.133 4.133 21 C -0.203 4.203 22 C -0.059 4.059 23 O -0.555 6.555 24 Si 0.781 3.219 25 C -0.032 4.032 26 C -0.242 4.242 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.112 0.888 42 H 0.124 0.876 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.391 0.609 46 H -0.300 1.300 47 H -0.284 1.284 48 H 0.166 0.834 49 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 -1.310 -1.454 6.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.023 4.023 4 O -0.244 6.244 5 C 0.118 3.882 6 C -0.277 4.277 7 C 0.134 3.866 8 O -0.223 6.223 9 C -0.008 4.008 10 C -0.111 4.111 11 H 0.129 0.871 12 C -0.150 4.150 13 C -0.005 4.005 14 O -0.263 6.263 15 C -0.091 4.091 16 C 0.379 3.621 17 F -0.158 7.158 18 F -0.169 7.169 19 F -0.165 7.165 20 C -0.170 4.170 21 C -0.204 4.204 22 C -0.168 4.168 23 O -0.362 6.362 24 Si 0.686 3.314 25 C -0.050 4.050 26 C -0.261 4.261 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.155 0.845 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.141 0.859 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.130 0.870 42 H 0.143 0.857 43 H 0.125 0.875 44 H 0.110 0.890 45 H 0.240 0.760 46 H -0.228 1.228 47 H -0.211 1.211 48 H 0.183 0.817 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.950 -0.662 -2.210 6.381 hybrid contribution 1.129 -1.118 -0.016 1.589 sum -4.820 -1.780 -2.226 5.600 Atomic orbital electron populations 1.21686 0.93003 1.03060 1.02829 1.21497 0.97015 0.94264 1.03288 1.23164 0.76560 0.99733 1.02811 1.86035 1.23302 1.27098 1.87984 1.18841 0.91522 0.84883 0.92925 1.20516 0.93310 0.97640 1.16259 1.18566 0.82549 0.92693 0.92778 1.86101 1.14997 1.33501 1.87734 1.22856 0.90343 0.84614 1.02956 1.22055 0.91877 0.99349 0.97831 0.87099 1.23341 1.03967 0.89090 0.98575 1.24142 0.82841 0.96854 0.96644 1.88084 1.40375 1.21978 1.75913 1.23283 1.04135 0.79885 1.01787 1.21490 0.88886 0.74948 0.76807 1.93174 1.66676 1.62052 1.93869 1.93187 1.95741 1.95500 1.32485 1.93181 1.91913 1.46340 1.85062 1.23623 1.03154 0.99111 0.91113 1.19752 0.93621 0.94198 1.12854 1.25009 1.04441 0.98709 0.88683 1.86491 1.39250 1.93643 1.16851 0.94041 0.80933 0.73590 0.82807 1.20874 0.91933 0.98293 0.93871 1.21395 1.01510 0.91310 1.11869 0.91798 0.91462 0.91690 0.91369 0.91289 0.90476 0.90688 0.84487 0.90674 0.90278 0.89452 0.85863 0.91111 0.93594 0.87003 0.85748 0.87509 0.88997 0.76012 1.22827 1.21079 0.81730 0.82609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.87 9.91 71.98 0.71 1.58 16 2 C -0.12 0.40 6.30 30.59 0.19 0.60 16 3 C 0.05 -0.13 4.74 71.98 0.34 0.21 16 4 O -0.33 -1.21 10.13 -92.38 -0.94 -2.14 16 5 C 0.16 0.62 6.68 22.49 0.15 0.77 16 6 C -0.26 -1.30 8.97 22.46 0.20 -1.09 16 7 C 0.18 1.03 6.66 22.49 0.15 1.18 16 8 O -0.31 -1.84 9.46 -92.43 -0.87 -2.71 16 9 C 0.07 0.06 4.33 71.98 0.31 0.37 16 10 C -0.09 0.16 4.21 -10.17 -0.04 0.12 16 11 H 0.11 -0.29 8.14 -2.39 -0.02 -0.30 16 12 C -0.11 -0.01 6.90 31.21 0.22 0.20 16 13 C 0.04 0.02 0.84 -10.27 -0.01 0.01 16 14 O -0.35 -0.73 8.37 -148.98 -1.25 -1.97 16 15 C 0.00 -0.01 10.30 113.37 1.17 1.16 16 16 C 0.43 1.62 2.52 71.98 0.18 1.80 16 17 F -0.18 -0.67 15.81 44.97 0.71 0.04 16 18 F -0.19 -1.46 17.10 44.97 0.77 -0.69 16 19 F -0.18 -0.69 15.39 44.97 0.69 0.00 16 20 C -0.13 0.54 6.50 31.12 0.20 0.74 16 21 C -0.20 -0.61 5.27 -19.75 -0.10 -0.71 16 22 C -0.06 -0.16 2.37 71.24 0.17 0.01 16 23 O -0.55 -2.00 12.88 -148.98 -1.92 -3.92 16 24 Si 0.78 -0.99 29.91 68.60 2.05 1.06 16 25 C -0.03 0.04 8.65 22.24 0.19 0.23 16 26 C -0.24 0.09 9.04 22.38 0.20 0.30 16 27 H 0.06 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.06 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.08 -0.38 7.66 -2.38 -0.02 -0.40 16 33 H 0.07 -0.35 7.66 -2.39 -0.02 -0.37 16 34 H 0.14 0.51 6.30 -2.91 -0.02 0.49 16 35 H 0.08 -0.09 7.65 -2.39 -0.02 -0.11 16 36 H 0.08 0.18 5.66 -2.38 -0.01 0.16 16 37 H 0.09 0.25 8.10 -2.39 -0.02 0.23 16 38 H 0.12 -0.21 7.02 -2.38 -0.02 -0.22 16 39 H 0.07 -0.38 6.55 -2.39 -0.02 -0.40 16 40 H 0.05 -0.02 6.69 -2.39 -0.02 -0.03 16 41 H 0.11 -0.49 8.14 -2.38 -0.02 -0.51 16 42 H 0.12 -0.77 8.04 -2.39 -0.02 -0.79 16 43 H 0.11 -0.69 6.63 -2.39 -0.02 -0.70 16 44 H 0.09 0.55 7.82 -2.39 -0.02 0.53 16 45 H 0.39 -1.90 8.70 -74.06 -0.64 -2.54 16 46 H -0.30 -1.90 7.11 99.48 0.71 -1.19 16 47 H -0.28 -0.91 7.11 99.48 0.71 -0.20 16 48 H 0.17 -1.31 5.12 -2.91 -0.01 -1.33 16 49 H 0.16 -0.86 6.29 -2.91 -0.02 -0.88 16 Total: 0.00 -16.95 400.36 3.88 -13.08 By element: Atomic # 1 Polarization: -10.61 SS G_CDS: 0.39 Total: -10.22 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 4.24 Total: 7.48 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -4.98 Total: -10.75 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 2.17 Total: -0.65 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: 2.05 Total: 1.06 kcal Total: -16.95 3.88 -13.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26953_17321600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.353 kcal (2) G-P(sol) polarization free energy of solvation -16.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds