Wall clock time and date at job start Tue Mar 9 2021 18:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34743 * 116.99860 * 2 1 4 4 O 1.21509 * 120.00213 * 359.97438 * 3 2 1 5 5 C 1.47474 * 119.99623 * 179.97438 * 3 2 1 6 6 C 1.39771 * 120.08996 * 179.97438 * 5 3 2 7 7 C 1.37701 * 119.90658 * 179.97438 * 6 5 3 8 8 C 1.50697 * 119.95497 * 180.02562 * 7 6 5 9 9 O 1.42900 * 109.46812 * 104.98002 * 8 7 6 10 10 Si 1.86294 * 109.47220 * 344.98025 * 8 7 6 11 11 C 1.38991 * 120.09143 * 359.97438 * 7 6 5 12 12 O 1.35698 * 119.90979 * 180.02562 * 11 7 6 13 13 C 1.42899 * 117.00404 * 180.02562 * 12 11 7 14 14 C 1.52995 * 109.47232 * 179.97438 * 13 12 11 15 15 H 1.09002 * 112.85043 * 314.66319 * 14 13 12 16 16 C 1.53785 * 113.69093 * 85.93436 * 14 13 12 17 17 C 1.53779 * 87.08093 * 139.99088 * 16 14 13 18 18 H 1.09003 * 113.61186 * 89.11185 * 17 16 14 19 19 O 1.42898 * 113.68812 * 220.00737 * 17 16 14 20 20 C 1.53781 * 113.61293 * 183.47060 * 14 13 12 21 21 C 1.39039 * 120.18409 * 0.27922 * 11 7 6 22 22 C 1.37654 * 120.09544 * 359.47937 * 21 11 7 23 23 H 1.09009 * 109.46949 * 60.00224 * 1 2 3 24 24 H 1.09004 * 109.47607 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47642 * 300.00861 * 1 2 3 26 26 H 1.07998 * 120.05029 * 0.02562 * 6 5 3 27 27 H 1.09001 * 109.47078 * 224.97652 * 8 7 6 28 28 H 0.96697 * 114.00343 * 60.00080 * 9 8 7 29 29 H 1.48505 * 110.00181 * 299.99849 * 10 8 7 30 30 H 1.48502 * 110.00188 * 61.31926 * 10 8 7 31 31 H 1.09005 * 109.47011 * 59.99380 * 13 12 11 32 32 H 1.09004 * 109.46738 * 300.00130 * 13 12 11 33 33 H 1.09003 * 113.60734 * 254.54208 * 16 14 13 34 34 H 1.08996 * 113.61146 * 25.43706 * 16 14 13 35 35 H 0.96702 * 113.99687 * 277.53355 * 19 17 16 36 36 H 1.09005 * 113.61302 * 334.47929 * 20 14 13 37 37 H 1.08993 * 113.62030 * 105.38774 * 20 14 13 38 38 H 1.08001 * 119.95157 * 179.72265 * 21 11 7 39 39 H 1.08004 * 120.04740 * 180.25407 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 -0.0005 5 6 3.5364 1.2777 0.0006 6 6 4.1730 2.5220 0.0000 7 6 5.5483 2.5897 0.0011 8 6 6.2358 3.9307 0.0011 9 8 6.7619 4.1962 1.3029 10 14 5.0098 5.2570 -0.4556 11 6 6.3034 1.4227 0.0033 12 8 7.6585 1.4937 0.0048 13 6 8.3730 0.2561 0.0064 14 6 9.8772 0.5357 0.0074 15 1 10.1650 1.3066 -0.7074 16 6 10.4654 0.7479 1.4124 17 6 11.6809 -0.0677 0.9411 18 1 12.4617 0.5383 0.4814 19 8 12.1864 -0.9678 1.9291 20 6 10.7399 -0.7347 -0.0761 21 6 5.6741 0.1829 -0.0015 22 6 4.2997 0.1064 0.0024 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.5870 3.4293 -0.0004 27 1 7.0490 3.9221 -0.7246 28 1 7.4083 3.5442 1.6064 29 1 4.4553 4.9924 -1.8075 30 1 3.9124 5.3003 0.5440 31 1 8.1107 -0.3161 -0.8835 32 1 8.1086 -0.3149 0.8965 33 1 10.6981 1.7892 1.6355 34 1 9.8935 0.2621 2.2030 35 1 12.7788 -0.5541 2.5717 36 1 10.2431 -1.6258 0.3077 37 1 11.1943 -0.8904 -1.0545 38 1 6.2646 -0.7214 -0.0044 39 1 3.8117 -0.8571 0.0028 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_2787264_11354858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:00:42 Heat of formation + Delta-G solvation = -148.343320 kcal Electronic energy + Delta-G solvation = -23722.264181 eV Core-core repulsion = 19984.093675 eV Total energy + Delta-G solvation = -3738.170507 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.123 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.99363 -41.21126 -40.39553 -38.68988 -37.55794 -37.27831 -36.14897 -33.09459 -31.89111 -29.75302 -28.59526 -26.94226 -26.73738 -25.07599 -24.12839 -22.68743 -21.74207 -20.78332 -19.51736 -18.95086 -18.72277 -18.09045 -17.95830 -17.37982 -17.23547 -17.11559 -16.51414 -16.18909 -15.81879 -15.48185 -15.17469 -14.99399 -14.68695 -14.46907 -14.28919 -13.99350 -13.64437 -13.54537 -13.51164 -13.15975 -12.88663 -12.78430 -12.53849 -12.42338 -12.07508 -11.93013 -11.79318 -11.62088 -11.44908 -11.23962 -11.01554 -10.91444 -10.28668 -9.53392 -4.79163 -0.44311 -0.01107 1.38964 1.43463 1.63728 1.71305 1.77205 2.04263 2.49788 3.06145 3.23177 3.33123 3.37308 3.48543 3.60560 3.64932 3.72102 3.82318 3.87176 3.96759 3.99970 4.04294 4.11100 4.16518 4.21653 4.24626 4.41826 4.45315 4.53997 4.57821 4.59598 4.65481 4.78305 4.87576 4.92246 4.95049 5.03761 5.15700 5.31631 5.34146 6.02060 6.57134 6.58808 6.71547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.511 3.489 4 O -0.506 6.506 5 C -0.162 4.162 6 C -0.017 4.017 7 C -0.157 4.157 8 C -0.070 4.070 9 O -0.533 6.533 10 Si 0.740 3.260 11 C 0.182 3.818 12 O -0.304 6.304 13 C 0.067 3.933 14 C -0.110 4.110 15 H 0.107 0.893 16 C -0.164 4.164 17 C 0.076 3.924 18 H 0.085 0.915 19 O -0.560 6.560 20 C -0.120 4.120 21 C -0.219 4.219 22 C -0.013 4.013 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.065 0.935 26 H 0.144 0.856 27 H 0.078 0.922 28 H 0.366 0.634 29 H -0.247 1.247 30 H -0.248 1.248 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.381 0.619 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.143 0.857 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.242 -1.999 -0.988 4.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.357 3.643 4 O -0.395 6.395 5 C -0.163 4.163 6 C -0.035 4.035 7 C -0.158 4.158 8 C -0.178 4.178 9 O -0.338 6.338 10 Si 0.638 3.362 11 C 0.135 3.865 12 O -0.217 6.217 13 C -0.007 4.007 14 C -0.128 4.128 15 H 0.125 0.875 16 C -0.201 4.201 17 C 0.017 3.983 18 H 0.103 0.897 19 O -0.366 6.366 20 C -0.158 4.158 21 C -0.238 4.238 22 C -0.031 4.031 23 H 0.084 0.916 24 H 0.124 0.876 25 H 0.084 0.916 26 H 0.161 0.839 27 H 0.096 0.904 28 H 0.213 0.787 29 H -0.171 1.171 30 H -0.173 1.173 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.229 0.771 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.160 0.840 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.566 -1.298 -1.580 3.281 hybrid contribution 0.454 -1.589 0.478 1.721 sum 3.020 -2.887 -1.103 4.321 Atomic orbital electron populations 1.23346 0.75351 1.04105 1.02922 1.86522 1.24042 1.32301 1.84313 1.20994 0.88855 0.81672 0.72821 1.90871 1.66740 1.36013 1.45863 1.18895 0.89480 0.94407 1.13540 1.20958 0.92966 0.97240 0.92354 1.19615 0.92587 0.94744 1.08869 1.25131 1.04524 0.99423 0.88749 1.86735 1.62272 1.53045 1.31756 0.93201 0.76394 0.87082 0.79486 1.19089 0.82738 0.93218 0.91447 1.86013 1.14779 1.33804 1.87088 1.22984 0.91094 0.84415 1.02226 1.22340 0.91336 0.99772 0.99365 0.87476 1.23784 0.98176 1.01530 0.96652 1.23275 0.93661 0.91346 0.89993 0.89674 1.86522 1.67810 1.38565 1.43684 1.23071 0.96054 0.97213 0.99421 1.21306 0.95659 0.96891 1.09941 1.21310 0.92905 0.98220 0.90687 0.91607 0.87630 0.91578 0.83892 0.90350 0.78685 1.17133 1.17288 0.91090 0.91058 0.90551 0.89021 0.77074 0.88764 0.90018 0.83981 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.00 10.57 101.05 1.07 1.07 16 2 O -0.36 -0.90 9.81 -40.61 -0.40 -1.30 16 3 C 0.51 2.30 7.89 34.49 0.27 2.57 16 4 O -0.51 -3.66 16.13 -19.27 -0.31 -3.97 16 5 C -0.16 -0.52 5.87 -104.97 -0.62 -1.14 16 6 C -0.02 -0.07 8.20 -39.20 -0.32 -0.39 16 7 C -0.16 -0.37 5.27 -104.54 -0.55 -0.92 16 8 C -0.07 -0.10 2.33 36.00 0.08 -0.01 16 9 O -0.53 -1.01 12.65 -35.23 -0.45 -1.45 16 10 Si 0.74 0.85 30.40 -169.99 -5.17 -4.32 16 11 C 0.18 0.18 6.63 -39.01 -0.26 -0.08 16 12 O -0.30 0.10 9.01 -18.80 -0.17 -0.07 16 13 C 0.07 -0.16 4.56 37.16 0.17 0.01 16 14 C -0.11 0.30 4.01 -89.81 -0.36 -0.06 16 15 H 0.11 -0.30 8.14 -51.93 -0.42 -0.73 16 16 C -0.16 0.39 7.47 -25.92 -0.19 0.20 16 17 C 0.08 -0.15 5.21 -25.92 -0.14 -0.29 16 18 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 19 O -0.56 0.23 13.67 -35.23 -0.48 -0.25 16 20 C -0.12 0.28 7.47 -25.92 -0.19 0.09 16 21 C -0.22 0.02 9.01 -39.50 -0.36 -0.33 16 22 C -0.01 -0.01 9.61 -39.21 -0.38 -0.39 16 23 H 0.07 0.01 8.14 -51.92 -0.42 -0.41 16 24 H 0.11 -0.28 8.14 -51.93 -0.42 -0.70 16 25 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 26 H 0.14 0.66 4.51 -52.49 -0.24 0.43 16 27 H 0.08 0.01 7.82 -51.93 -0.41 -0.40 16 28 H 0.37 -0.10 8.59 45.56 0.39 0.29 16 29 H -0.25 -0.66 7.11 56.52 0.40 -0.26 16 30 H -0.25 -1.02 6.81 56.52 0.38 -0.64 16 31 H 0.07 -0.22 7.64 -51.93 -0.40 -0.62 16 32 H 0.07 -0.20 7.40 -51.93 -0.38 -0.59 16 33 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 34 H 0.09 -0.15 7.92 -51.93 -0.41 -0.56 16 35 H 0.38 -1.62 9.12 45.56 0.42 -1.21 16 36 H 0.09 -0.17 8.10 -51.93 -0.42 -0.59 16 37 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 38 H 0.14 -0.36 6.28 -52.49 -0.33 -0.69 16 39 H 0.15 -0.17 7.60 -52.48 -0.40 -0.57 16 LS Contribution 331.64 15.07 5.00 5.00 Total: 0.00 -7.56 331.64 -8.10 -15.66 By element: Atomic # 1 Polarization: -5.27 SS G_CDS: -4.35 Total: -9.62 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -1.77 Total: 0.33 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -1.81 Total: -7.04 kcal Atomic # 14 Polarization: 0.85 SS G_CDS: -5.17 Total: -4.32 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -7.56 -8.10 -15.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2787264_11354858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.687 kcal (2) G-P(sol) polarization free energy of solvation -7.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds