Wall clock time and date at job start Tue Mar 9 2021 18:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34743 * 116.99860 * 2 1 4 4 O 1.21509 * 120.00213 * 359.97438 * 3 2 1 5 5 C 1.47474 * 119.99623 * 179.97438 * 3 2 1 6 6 C 1.39771 * 120.08996 * 179.97438 * 5 3 2 7 7 C 1.37701 * 119.90658 * 179.97438 * 6 5 3 8 8 C 1.50697 * 119.95497 * 180.02562 * 7 6 5 9 9 O 1.42900 * 109.46812 * 104.98002 * 8 7 6 10 10 Si 1.86294 * 109.47220 * 344.98025 * 8 7 6 11 11 C 1.38991 * 120.09143 * 359.97438 * 7 6 5 12 12 O 1.35698 * 119.90979 * 180.02562 * 11 7 6 13 13 C 1.42899 * 117.00404 * 180.02562 * 12 11 7 14 14 C 1.52995 * 109.47232 * 179.97438 * 13 12 11 15 15 H 1.09002 * 112.85043 * 314.66319 * 14 13 12 16 16 C 1.53785 * 113.69093 * 85.93436 * 14 13 12 17 17 C 1.53779 * 87.08093 * 139.99088 * 16 14 13 18 18 H 1.09003 * 113.61186 * 89.11185 * 17 16 14 19 19 O 1.42898 * 113.68812 * 220.00737 * 17 16 14 20 20 C 1.53781 * 113.61293 * 183.47060 * 14 13 12 21 21 C 1.39039 * 120.18409 * 0.27922 * 11 7 6 22 22 C 1.37654 * 120.09544 * 359.47937 * 21 11 7 23 23 H 1.09009 * 109.46949 * 60.00224 * 1 2 3 24 24 H 1.09004 * 109.47607 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47642 * 300.00861 * 1 2 3 26 26 H 1.07998 * 120.05029 * 0.02562 * 6 5 3 27 27 H 1.09001 * 109.47078 * 224.97652 * 8 7 6 28 28 H 0.96697 * 114.00343 * 60.00080 * 9 8 7 29 29 H 1.48505 * 110.00181 * 299.99849 * 10 8 7 30 30 H 1.48502 * 110.00188 * 61.31926 * 10 8 7 31 31 H 1.09005 * 109.47011 * 59.99380 * 13 12 11 32 32 H 1.09004 * 109.46738 * 300.00130 * 13 12 11 33 33 H 1.09003 * 113.60734 * 254.54208 * 16 14 13 34 34 H 1.08996 * 113.61146 * 25.43706 * 16 14 13 35 35 H 0.96702 * 113.99687 * 277.53355 * 19 17 16 36 36 H 1.09005 * 113.61302 * 334.47929 * 20 14 13 37 37 H 1.08993 * 113.62030 * 105.38774 * 20 14 13 38 38 H 1.08001 * 119.95157 * 179.72265 * 21 11 7 39 39 H 1.08004 * 120.04740 * 180.25407 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 -0.0005 5 6 3.5364 1.2777 0.0006 6 6 4.1730 2.5220 0.0000 7 6 5.5483 2.5897 0.0011 8 6 6.2358 3.9307 0.0011 9 8 6.7619 4.1962 1.3029 10 14 5.0098 5.2570 -0.4556 11 6 6.3034 1.4227 0.0033 12 8 7.6585 1.4937 0.0048 13 6 8.3730 0.2561 0.0064 14 6 9.8772 0.5357 0.0074 15 1 10.1650 1.3066 -0.7074 16 6 10.4654 0.7479 1.4124 17 6 11.6809 -0.0677 0.9411 18 1 12.4617 0.5383 0.4814 19 8 12.1864 -0.9678 1.9291 20 6 10.7399 -0.7347 -0.0761 21 6 5.6741 0.1829 -0.0015 22 6 4.2997 0.1064 0.0024 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.5870 3.4293 -0.0004 27 1 7.0490 3.9221 -0.7246 28 1 7.4083 3.5442 1.6064 29 1 4.4553 4.9924 -1.8075 30 1 3.9124 5.3003 0.5440 31 1 8.1107 -0.3161 -0.8835 32 1 8.1086 -0.3149 0.8965 33 1 10.6981 1.7892 1.6355 34 1 9.8935 0.2621 2.2030 35 1 12.7788 -0.5541 2.5717 36 1 10.2431 -1.6258 0.3077 37 1 11.1943 -0.8904 -1.0545 38 1 6.2646 -0.7214 -0.0044 39 1 3.8117 -0.8571 0.0028 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2787264_11354858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:00:41 Heat of formation + Delta-G solvation = -148.171426 kcal Electronic energy + Delta-G solvation = -23722.256728 eV Core-core repulsion = 19984.093675 eV Total energy + Delta-G solvation = -3738.163053 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.123 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.10068 -41.34494 -40.27483 -38.70045 -37.73711 -37.49951 -36.01198 -33.18861 -31.98269 -29.64177 -28.63568 -26.85421 -26.69881 -25.15742 -24.11007 -22.66352 -21.91945 -20.57828 -19.55121 -19.09210 -18.62061 -18.23756 -18.08518 -17.58972 -17.21129 -17.11444 -16.34290 -16.24647 -15.79893 -15.58588 -15.20849 -15.03079 -14.69264 -14.53793 -14.35368 -14.12207 -13.65589 -13.55272 -13.43331 -13.19431 -12.94599 -12.60699 -12.47099 -12.36773 -12.27776 -11.98756 -11.93590 -11.73085 -11.38492 -11.20081 -11.12521 -10.72551 -10.38253 -9.60735 -4.94306 -0.60370 -0.10720 1.18777 1.27550 1.47860 1.55261 1.80455 1.88869 2.36366 3.26296 3.30874 3.44370 3.45588 3.49633 3.57229 3.76557 3.79567 3.81602 3.94469 3.97784 4.06998 4.18022 4.21273 4.22288 4.23057 4.35448 4.40321 4.51475 4.62137 4.68340 4.78405 4.80304 4.83031 4.89690 4.94368 5.01427 5.11426 5.13435 5.25322 5.40504 6.05526 6.44405 6.59560 6.88033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.510 3.490 4 O -0.546 6.546 5 C -0.183 4.183 6 C -0.038 4.038 7 C -0.170 4.170 8 C -0.069 4.069 9 O -0.544 6.544 10 Si 0.801 3.199 11 C 0.188 3.812 12 O -0.305 6.305 13 C 0.061 3.939 14 C -0.102 4.102 15 H 0.111 0.889 16 C -0.162 4.162 17 C 0.070 3.930 18 H 0.096 0.904 19 O -0.583 6.583 20 C -0.121 4.121 21 C -0.212 4.212 22 C -0.004 4.004 23 H 0.062 0.938 24 H 0.139 0.861 25 H 0.061 0.939 26 H 0.122 0.878 27 H 0.097 0.903 28 H 0.376 0.624 29 H -0.271 1.271 30 H -0.298 1.298 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.395 0.605 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.173 0.827 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.750 -3.528 -1.282 6.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.358 3.642 4 O -0.439 6.439 5 C -0.184 4.184 6 C -0.056 4.056 7 C -0.171 4.171 8 C -0.179 4.179 9 O -0.350 6.350 10 Si 0.705 3.295 11 C 0.140 3.860 12 O -0.217 6.217 13 C -0.013 4.013 14 C -0.120 4.120 15 H 0.129 0.871 16 C -0.200 4.200 17 C 0.011 3.989 18 H 0.114 0.886 19 O -0.391 6.391 20 C -0.159 4.159 21 C -0.230 4.230 22 C -0.022 4.022 23 H 0.080 0.920 24 H 0.157 0.843 25 H 0.080 0.920 26 H 0.139 0.861 27 H 0.115 0.885 28 H 0.225 0.775 29 H -0.197 1.197 30 H -0.226 1.226 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.245 0.755 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.191 0.809 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.111 -2.838 -1.873 5.335 hybrid contribution -0.009 -1.184 0.602 1.328 sum 4.103 -4.022 -1.271 5.885 Atomic orbital electron populations 1.23622 0.74088 1.06139 1.02589 1.86516 1.25320 1.31139 1.83762 1.21339 0.89489 0.81624 0.71789 1.90842 1.67665 1.37312 1.48062 1.18969 0.88981 0.95222 1.15268 1.20920 0.93741 0.96951 0.94023 1.19689 0.92147 0.95850 1.09426 1.25103 1.04906 0.98752 0.89100 1.86698 1.62710 1.53633 1.31983 0.92669 0.74586 0.86102 0.76178 1.19105 0.83345 0.93041 0.90459 1.86018 1.13994 1.35102 1.86585 1.23196 0.90976 0.83819 1.03309 1.22281 0.91028 0.99631 0.99070 0.87078 1.23744 0.98000 1.01516 0.96703 1.23438 0.94114 0.91419 0.89941 0.88616 1.86478 1.68400 1.39799 1.44472 1.23084 0.96063 0.97106 0.99632 1.21634 0.95424 0.97580 1.08399 1.21545 0.93269 0.98043 0.89373 0.91956 0.84337 0.92019 0.86058 0.88475 0.77507 1.19678 1.22644 0.89686 0.90250 0.90276 0.89785 0.75529 0.89275 0.89420 0.80931 0.81439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.57 113.37 1.20 1.22 16 2 O -0.35 -1.94 9.81 -56.53 -0.55 -2.50 16 3 C 0.51 5.51 7.89 70.26 0.55 6.06 16 4 O -0.55 -9.58 16.13 19.81 0.32 -9.26 16 5 C -0.18 -1.39 5.87 -20.09 -0.12 -1.51 16 6 C -0.04 -0.36 8.20 22.51 0.18 -0.18 16 7 C -0.17 -0.89 5.27 -19.81 -0.10 -0.99 16 8 C -0.07 -0.21 2.33 71.23 0.17 -0.05 16 9 O -0.54 -2.07 12.65 -148.98 -1.89 -3.95 16 10 Si 0.80 3.41 30.40 68.60 2.09 5.50 16 11 C 0.19 0.15 6.63 22.64 0.15 0.30 16 12 O -0.30 0.74 9.01 -90.18 -0.81 -0.07 16 13 C 0.06 -0.42 4.56 71.98 0.33 -0.09 16 14 C -0.10 0.72 4.01 -10.27 -0.04 0.68 16 15 H 0.11 -0.84 8.14 -2.39 -0.02 -0.86 16 16 C -0.16 0.94 7.47 31.12 0.23 1.17 16 17 C 0.07 -0.34 5.21 31.12 0.16 -0.18 16 18 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 19 O -0.58 0.77 13.67 -148.98 -2.04 -1.27 16 20 C -0.12 0.72 7.47 31.12 0.23 0.95 16 21 C -0.21 0.44 9.01 22.32 0.20 0.65 16 22 C 0.00 0.00 9.61 22.51 0.22 0.21 16 23 H 0.06 0.09 8.14 -2.38 -0.02 0.07 16 24 H 0.14 -0.88 8.14 -2.38 -0.02 -0.90 16 25 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 26 H 0.12 1.59 4.51 -2.91 -0.01 1.58 16 27 H 0.10 -0.07 7.82 -2.39 -0.02 -0.08 16 28 H 0.38 -0.43 8.59 -74.06 -0.64 -1.06 16 29 H -0.27 -2.10 7.11 99.48 0.71 -1.39 16 30 H -0.30 -3.70 6.81 99.48 0.68 -3.02 16 31 H 0.09 -0.78 7.64 -2.38 -0.02 -0.80 16 32 H 0.08 -0.64 7.40 -2.39 -0.02 -0.66 16 33 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.08 -0.34 7.92 -2.39 -0.02 -0.36 16 35 H 0.39 -3.48 9.12 -74.06 -0.68 -4.15 16 36 H 0.09 -0.43 8.10 -2.38 -0.02 -0.45 16 37 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H 0.17 -1.46 6.28 -2.91 -0.02 -1.48 16 39 H 0.17 -0.69 7.60 -2.91 -0.02 -0.71 16 Total: 0.00 -19.66 331.64 0.27 -19.39 By element: Atomic # 1 Polarization: -15.88 SS G_CDS: -0.21 Total: -16.09 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 3.36 Total: 8.25 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -4.97 Total: -17.05 kcal Atomic # 14 Polarization: 3.41 SS G_CDS: 2.09 Total: 5.50 kcal Total: -19.66 0.27 -19.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2787264_11354858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.781 kcal (2) G-P(sol) polarization free energy of solvation -19.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds