Wall clock time and date at job start Tue Mar 9 2021 18:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34743 * 116.99625 * 2 1 4 4 O 1.21497 * 120.00448 * 0.02562 * 3 2 1 5 5 C 1.47472 * 119.99560 * 179.97438 * 3 2 1 6 6 C 1.39781 * 120.09046 * 180.02562 * 5 3 2 7 7 C 1.37693 * 119.90380 * 180.25720 * 6 5 3 8 8 C 1.50702 * 119.95443 * 179.71882 * 7 6 5 9 9 O 1.42898 * 109.47180 * 104.99536 * 8 7 6 10 10 Si 1.86301 * 109.46722 * 344.99714 * 8 7 6 11 11 C 1.39001 * 120.09655 * 359.42051 * 7 6 5 12 12 O 1.35695 * 119.90956 * 180.32974 * 11 7 6 13 13 C 1.42897 * 116.99737 * 180.27485 * 12 11 7 14 14 C 1.53006 * 109.46768 * 179.97438 * 13 12 11 15 15 H 1.08998 * 112.85164 * 314.65941 * 14 13 12 16 16 C 1.53776 * 113.61363 * 85.86253 * 14 13 12 17 17 C 1.53959 * 87.01817 * 139.95056 * 16 14 13 18 18 H 1.09004 * 113.66449 * 220.06340 * 17 16 14 19 19 N 1.46499 * 113.61628 * 89.19886 * 17 16 14 20 20 C 1.34777 * 120.00169 * 107.46377 * 19 17 16 21 21 O 1.21509 * 120.00122 * 0.02562 * 20 19 17 22 22 O 1.34639 * 119.99930 * 180.02562 * 20 19 17 23 23 C 1.45201 * 117.00062 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47077 * 59.99815 * 23 22 20 25 25 C 1.52998 * 109.47152 * 179.97438 * 23 22 20 26 26 C 1.53005 * 109.46952 * 299.99877 * 23 22 20 27 27 C 1.53784 * 113.60969 * 183.47105 * 14 13 12 28 28 C 1.39034 * 120.18068 * 0.59466 * 11 7 6 29 29 C 1.37654 * 120.09599 * 359.69041 * 28 11 7 30 30 H 1.08996 * 109.47436 * 299.99734 * 1 2 3 31 31 H 1.09004 * 109.47013 * 60.00323 * 1 2 3 32 32 H 1.09006 * 109.47020 * 179.97438 * 1 2 3 33 33 H 1.08002 * 120.04445 * 359.97183 * 6 5 3 34 34 H 1.08995 * 109.47468 * 224.99969 * 8 7 6 35 35 H 0.96694 * 114.00252 * 300.00122 * 9 8 7 36 36 H 1.48505 * 109.99718 * 180.02562 * 10 8 7 37 37 H 1.48499 * 110.00388 * 301.31451 * 10 8 7 38 38 H 1.09006 * 109.47274 * 299.99197 * 13 12 11 39 39 H 1.09001 * 109.47748 * 59.99739 * 13 12 11 40 40 H 1.08998 * 113.61339 * 254.52378 * 16 14 13 41 41 H 1.08996 * 113.61606 * 25.43399 * 16 14 13 42 42 H 0.96998 * 120.00119 * 287.46752 * 19 17 16 43 43 H 1.08995 * 109.46974 * 60.00229 * 24 23 22 44 44 H 1.09000 * 109.46541 * 180.02562 * 24 23 22 45 45 H 1.08995 * 109.47132 * 300.00064 * 24 23 22 46 46 H 1.09004 * 109.47179 * 59.99881 * 25 23 22 47 47 H 1.09003 * 109.47187 * 179.97438 * 25 23 22 48 48 H 1.08995 * 109.47247 * 299.99985 * 25 23 22 49 49 H 1.09004 * 109.47018 * 59.99745 * 26 23 22 50 50 H 1.08995 * 109.47089 * 179.97438 * 26 23 22 51 51 H 1.08995 * 109.47050 * 299.99917 * 26 23 22 52 52 H 1.09002 * 113.61736 * 334.55941 * 27 14 13 53 53 H 1.08998 * 113.61844 * 105.47363 * 27 14 13 54 54 H 1.08000 * 119.95217 * 179.70282 * 28 11 7 55 55 H 1.07999 * 120.05294 * 180.02562 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5364 1.2778 0.0006 6 6 4.1729 2.5222 0.0011 7 6 5.5482 2.5898 -0.0037 8 6 6.2357 3.9309 -0.0095 9 8 6.7676 4.1991 1.2893 10 14 5.0076 5.2562 -0.4636 11 6 6.3034 1.4229 0.0030 12 8 7.6585 1.4939 0.0050 13 6 8.3730 0.2564 0.0059 14 6 9.8773 0.5361 0.0075 15 1 10.1652 1.3075 -0.7067 16 6 10.4628 0.7488 1.4134 17 6 11.6795 -0.0688 0.9428 18 1 12.0629 -0.7563 1.6969 19 7 12.7311 0.7450 0.3279 20 6 13.8842 0.9677 0.9890 21 8 14.0519 0.4932 2.0950 22 8 14.8504 1.7160 0.4240 23 6 16.0658 1.9137 1.1934 24 6 16.7125 0.5576 1.4828 25 6 17.0396 2.7824 0.3946 26 6 15.7264 2.6090 2.5135 27 6 10.7400 -0.7342 -0.0767 28 6 5.6742 0.1831 0.0022 29 6 4.2998 0.1065 0.0011 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.5869 3.4294 0.0007 34 1 7.0456 3.9208 -0.7389 35 1 6.1015 4.2230 1.9899 36 1 5.6733 6.5836 -0.4734 37 1 4.4235 4.9716 -1.7989 38 1 8.1085 -0.3152 0.8956 39 1 8.1110 -0.3152 -0.8844 40 1 10.6952 1.7900 1.6367 41 1 9.8896 0.2632 2.2032 42 1 12.5974 1.1235 -0.5551 43 1 16.9543 0.0624 0.5425 44 1 17.6246 0.7060 2.0608 45 1 16.0190 -0.0616 2.0517 46 1 16.5791 3.7486 0.1880 47 1 17.9518 2.9312 0.9724 48 1 17.2813 2.2867 -0.5456 49 1 15.0328 1.9897 3.0824 50 1 16.6387 2.7569 3.0912 51 1 15.2657 3.5750 2.3073 52 1 10.2427 -1.6259 0.3050 53 1 11.1959 -0.8884 -1.0547 54 1 6.2647 -0.7213 0.0026 55 1 3.8118 -0.8570 0.0009 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2787264_15734082.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:02:01 Heat of formation + Delta-G solvation = -176.050418 kcal Electronic energy + Delta-G solvation = -36958.079959 eV Core-core repulsion = 31928.685644 eV Total energy + Delta-G solvation = -5029.394315 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.03274 -41.85439 -41.15430 -40.33298 -38.70387 -37.84007 -37.64068 -37.34159 -35.39441 -34.14697 -33.02040 -31.78917 -29.59520 -28.52756 -28.39906 -28.33352 -26.81574 -26.71004 -25.26312 -24.44615 -23.55075 -22.51660 -21.81853 -21.19301 -20.30630 -19.47780 -19.32290 -18.83890 -18.32437 -17.65683 -17.61352 -17.40919 -17.26424 -17.06549 -16.95474 -16.51276 -16.18802 -15.99186 -15.63226 -15.49450 -15.37997 -15.15952 -15.02016 -14.84066 -14.51699 -14.47782 -14.32467 -14.09300 -13.88057 -13.59862 -13.50044 -13.37885 -13.26105 -13.07349 -13.00160 -12.95035 -12.90125 -12.63098 -12.55268 -12.36506 -12.27504 -12.13781 -12.10117 -11.81847 -11.79098 -11.66212 -11.63577 -11.42993 -11.21713 -11.15065 -10.45809 -10.22143 -10.20871 -9.43148 -5.06064 -0.39877 0.07564 1.10427 1.22715 1.38913 1.56642 1.66525 1.68828 1.87684 2.01834 2.54793 3.08042 3.38873 3.41255 3.49637 3.58692 3.64732 3.70902 3.72286 3.74925 3.79239 3.84283 3.91165 3.93086 4.09638 4.24976 4.26136 4.31310 4.35126 4.39922 4.44512 4.46083 4.49209 4.58242 4.59152 4.67397 4.72615 4.73320 4.75646 4.76380 4.80465 4.84476 4.87324 4.91840 5.00086 5.03810 5.05912 5.08403 5.11418 5.14855 5.24056 5.28805 5.30760 5.43333 5.47025 5.58985 6.25800 6.33746 6.63934 6.75859 7.29276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.511 3.489 4 O -0.538 6.538 5 C -0.183 4.183 6 C -0.015 4.015 7 C -0.177 4.177 8 C -0.047 4.047 9 O -0.548 6.548 10 Si 0.746 3.254 11 C 0.190 3.810 12 O -0.310 6.310 13 C 0.057 3.943 14 C -0.104 4.104 15 H 0.096 0.904 16 C -0.145 4.145 17 C 0.128 3.872 18 H 0.097 0.903 19 N -0.685 5.685 20 C 0.646 3.354 21 O -0.592 6.592 22 O -0.371 6.371 23 C 0.127 3.873 24 C -0.179 4.179 25 C -0.138 4.138 26 C -0.180 4.180 27 C -0.115 4.115 28 C -0.219 4.219 29 C -0.004 4.004 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.132 0.868 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.392 0.608 36 H -0.288 1.288 37 H -0.289 1.289 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.104 0.896 42 H 0.416 0.584 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.099 0.901 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.088 0.912 51 H 0.059 0.941 52 H 0.124 0.876 53 H 0.092 0.908 54 H 0.168 0.832 55 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 -5.499 -1.120 5.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.358 3.642 4 O -0.430 6.430 5 C -0.184 4.184 6 C -0.032 4.032 7 C -0.179 4.179 8 C -0.158 4.158 9 O -0.356 6.356 10 Si 0.652 3.348 11 C 0.142 3.858 12 O -0.222 6.222 13 C -0.017 4.017 14 C -0.123 4.123 15 H 0.115 0.885 16 C -0.184 4.184 17 C 0.024 3.976 18 H 0.115 0.885 19 N -0.344 5.344 20 C 0.399 3.601 21 O -0.483 6.483 22 O -0.285 6.285 23 C 0.091 3.909 24 C -0.236 4.236 25 C -0.195 4.195 26 C -0.238 4.238 27 C -0.153 4.153 28 C -0.238 4.238 29 C -0.022 4.022 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.151 0.849 33 H 0.166 0.834 34 H 0.123 0.877 35 H 0.242 0.758 36 H -0.216 1.216 37 H -0.216 1.216 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.252 0.748 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.118 0.882 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.106 0.894 51 H 0.078 0.922 52 H 0.142 0.858 53 H 0.111 0.889 54 H 0.186 0.814 55 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.044 -4.613 -1.463 4.840 hybrid contribution -0.010 0.017 -0.499 0.499 sum 0.034 -4.596 -1.962 4.998 Atomic orbital electron populations 1.23574 0.74319 1.05837 1.02641 1.86518 1.25122 1.31731 1.83930 1.21285 0.89416 0.81538 0.71940 1.90840 1.67494 1.36916 1.47704 1.18936 0.88826 0.95231 1.15416 1.20923 0.92563 0.97258 0.92490 1.19590 0.92357 0.95215 1.10691 1.24763 1.04013 0.97678 0.89329 1.86508 1.38905 1.93574 1.16584 0.94072 0.81204 0.75347 0.84131 1.19258 0.83141 0.93516 0.89901 1.86138 1.14759 1.34898 1.86387 1.23243 0.90803 0.84109 1.03575 1.22587 0.91816 0.99716 0.98145 0.88529 1.23574 0.96565 1.00679 0.97564 1.21931 0.85659 0.92911 0.97149 0.88514 1.44398 1.13282 1.54994 1.21728 1.18325 0.81277 0.77681 0.82807 1.90903 1.81127 1.55477 1.20779 1.86311 1.26735 1.66072 1.49394 1.22365 0.80467 0.96739 0.91348 1.22469 1.02102 0.96226 1.02850 1.21895 0.97752 0.99085 1.00764 1.22475 1.03868 1.00597 0.96814 1.23319 0.94635 0.97177 1.00156 1.21568 0.95601 0.97288 1.09297 1.21518 0.93052 0.98351 0.89304 0.91764 0.92032 0.84944 0.83377 0.87695 0.75834 1.21556 1.21622 0.89596 0.89455 0.92690 0.87796 0.74765 0.91829 0.89423 0.91724 0.91349 0.88239 0.91085 0.91780 0.89366 0.92167 0.85801 0.88917 0.81431 0.81913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.57 113.37 1.20 1.13 16 2 O -0.36 -0.71 9.81 -56.54 -0.55 -1.26 16 3 C 0.51 2.75 7.89 70.26 0.55 3.31 16 4 O -0.54 -5.79 16.13 19.84 0.32 -5.47 16 5 C -0.18 -0.39 5.87 -20.09 -0.12 -0.50 16 6 C -0.01 -0.03 8.20 22.51 0.18 0.16 16 7 C -0.18 -0.28 5.27 -19.81 -0.10 -0.39 16 8 C -0.05 -0.10 2.37 71.24 0.17 0.07 16 9 O -0.55 -1.43 12.88 -148.98 -1.92 -3.35 16 10 Si 0.75 1.38 29.91 68.60 2.05 3.43 16 11 C 0.19 0.02 6.67 22.64 0.15 0.17 16 12 O -0.31 -0.04 9.45 -90.15 -0.85 -0.90 16 13 C 0.06 -0.39 4.56 71.98 0.33 -0.06 16 14 C -0.10 0.66 3.88 -10.27 -0.04 0.62 16 15 H 0.10 -0.47 8.14 -2.39 -0.02 -0.48 16 16 C -0.15 0.37 7.44 31.18 0.23 0.61 16 17 C 0.13 -0.31 4.33 45.58 0.20 -0.11 16 18 H 0.10 0.08 7.46 -2.38 -0.02 0.06 16 19 N -0.68 -0.27 5.27 -567.31 -2.99 -3.26 16 20 C 0.65 4.55 8.06 129.79 1.05 5.60 16 21 O -0.59 -7.25 11.48 19.81 0.23 -7.03 16 22 O -0.37 -2.26 9.94 -55.48 -0.55 -2.81 16 23 C 0.13 0.44 1.13 -10.79 -0.01 0.43 16 24 C -0.18 -0.59 8.37 71.98 0.60 0.01 16 25 C -0.14 0.21 8.85 71.98 0.64 0.85 16 26 C -0.18 -0.74 8.37 71.98 0.60 -0.14 16 27 C -0.12 1.04 7.39 31.12 0.23 1.27 16 28 C -0.22 0.88 9.01 22.32 0.20 1.08 16 29 C 0.00 0.01 9.61 22.51 0.22 0.23 16 30 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.13 -1.12 8.14 -2.38 -0.02 -1.14 16 33 H 0.15 0.14 4.70 -2.91 -0.01 0.12 16 34 H 0.11 0.42 7.83 -2.39 -0.02 0.41 16 35 H 0.39 -2.08 8.70 -74.06 -0.64 -2.72 16 36 H -0.29 -2.35 7.11 99.48 0.71 -1.64 16 37 H -0.29 -2.18 7.11 99.48 0.71 -1.47 16 38 H 0.09 -0.83 7.39 -2.38 -0.02 -0.84 16 39 H 0.09 -0.90 7.65 -2.39 -0.02 -0.91 16 40 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.10 -0.44 7.92 -2.39 -0.02 -0.46 16 42 H 0.42 -1.51 8.81 -92.71 -0.82 -2.33 16 43 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 46 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 47 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 48 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 49 H 0.06 0.60 5.88 -2.39 -0.01 0.59 16 50 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 51 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 52 H 0.12 -1.56 8.10 -2.39 -0.02 -1.58 16 53 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 54 H 0.17 -1.67 6.28 -2.91 -0.02 -1.69 16 55 H 0.16 -1.09 7.60 -2.91 -0.02 -1.11 16 Total: 0.00 -24.04 446.95 1.52 -22.53 By element: Atomic # 1 Polarization: -15.71 SS G_CDS: -0.49 Total: -16.21 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 6.28 Total: 14.33 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: -2.99 Total: -3.26 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -3.33 Total: -20.81 kcal Atomic # 14 Polarization: 1.38 SS G_CDS: 2.05 Total: 3.43 kcal Total: -24.04 1.52 -22.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2787264_15734082.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.524 kcal (2) G-P(sol) polarization free energy of solvation -24.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds