Wall clock time and date at job start Tue Mar 9 2021 18:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34746 * 117.00196 * 2 1 4 4 O 1.21507 * 119.99858 * 359.97438 * 3 2 1 5 5 C 1.47466 * 120.00131 * 179.97438 * 3 2 1 6 6 C 1.39776 * 120.09281 * 179.97438 * 5 3 2 7 7 C 1.37700 * 119.90675 * 180.02562 * 6 5 3 8 8 C 1.50699 * 119.95589 * 179.97438 * 7 6 5 9 9 O 1.42893 * 109.47336 * 104.97555 * 8 7 6 10 10 Si 1.86302 * 109.46721 * 344.97705 * 8 7 6 11 11 C 1.38993 * 120.09118 * 359.97438 * 7 6 5 12 12 O 1.35705 * 119.90532 * 180.02562 * 11 7 6 13 13 C 1.42901 * 116.99910 * 179.97438 * 12 11 7 14 14 C 1.52998 * 109.47046 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.46903 * 305.00059 * 14 13 12 16 16 C 1.52997 * 109.47449 * 64.99681 * 14 13 12 17 17 C 1.52998 * 109.47449 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47067 * 300.00474 * 17 16 14 19 19 H 1.09000 * 109.47181 * 299.99734 * 18 17 16 20 20 O 1.42902 * 109.47124 * 180.02562 * 18 17 16 21 21 C 1.52997 * 109.47373 * 59.99480 * 18 17 16 22 22 C 1.52998 * 109.47449 * 300.00286 * 21 18 17 23 23 C 1.39033 * 120.19012 * 0.30038 * 11 7 6 24 24 C 1.37666 * 120.08938 * 359.44280 * 23 11 7 25 25 H 1.08997 * 109.46821 * 60.00401 * 1 2 3 26 26 H 1.09002 * 109.46788 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46938 * 300.00493 * 1 2 3 28 28 H 1.08000 * 120.04747 * 359.97438 * 6 5 3 29 29 H 1.08996 * 109.47127 * 224.97959 * 8 7 6 30 30 H 0.96701 * 113.99671 * 59.99861 * 9 8 7 31 31 H 1.48499 * 110.00380 * 299.99861 * 10 8 7 32 32 H 1.48500 * 110.00073 * 61.31958 * 10 8 7 33 33 H 1.08999 * 109.47144 * 300.00260 * 13 12 11 34 34 H 1.08998 * 109.47043 * 59.99859 * 13 12 11 35 35 H 1.08999 * 109.47516 * 300.00723 * 16 14 13 36 36 H 1.09000 * 109.46760 * 60.00290 * 16 14 13 37 37 H 1.08996 * 109.47008 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.46903 * 60.00378 * 17 16 14 39 39 H 0.96699 * 114.00051 * 59.99429 * 20 18 17 40 40 H 1.08999 * 109.47516 * 179.97438 * 21 18 17 41 41 H 1.09003 * 109.46559 * 60.00492 * 21 18 17 42 42 H 1.09000 * 109.46903 * 299.99622 * 22 21 18 43 43 H 1.08996 * 109.47008 * 179.97438 * 22 21 18 44 44 H 1.07996 * 119.95568 * 179.72539 * 23 11 7 45 45 H 1.08001 * 120.04598 * 180.30057 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5364 1.2777 0.0006 6 6 4.1730 2.5221 0.0000 7 6 5.5484 2.5897 0.0000 8 6 6.2359 3.9307 -0.0011 9 8 6.7629 4.1970 1.3001 10 14 5.0095 5.2568 -0.4577 11 6 6.3034 1.4227 0.0011 12 8 7.6586 1.4937 0.0016 13 6 8.3731 0.2562 0.0033 14 6 9.8773 0.5357 0.0043 15 1 10.1275 1.1809 -0.8379 16 6 10.2663 1.2295 1.3113 17 6 11.7706 1.5084 1.3126 18 6 12.5342 0.1884 1.1889 19 1 12.2836 -0.4566 2.0311 20 8 13.9393 0.4489 1.1907 21 6 12.1452 -0.5054 -0.1181 22 6 10.6409 -0.7843 -0.1194 23 6 5.6743 0.1829 -0.0041 24 6 4.2998 0.1064 0.0012 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.5870 3.4293 -0.0012 29 1 7.0485 3.9218 -0.7275 30 1 7.4095 3.5451 1.6034 31 1 4.4540 4.9914 -1.8090 32 1 3.9128 5.3005 0.5426 33 1 8.1093 -0.3144 0.8938 34 1 8.1101 -0.3164 -0.8861 35 1 9.7219 2.1696 1.3997 36 1 10.0161 0.5843 2.1535 37 1 12.0478 2.0023 2.2439 38 1 12.0212 2.1534 0.4704 39 1 14.2568 0.8883 1.9914 40 1 12.6895 -1.4456 -0.2064 41 1 12.3959 0.1396 -0.9603 42 1 10.3903 -1.4293 0.7228 43 1 10.3638 -1.2782 -1.0507 44 1 6.2647 -0.7214 -0.0077 45 1 3.8118 -0.8571 0.0021 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2787264_16737254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:02:08 Heat of formation + Delta-G solvation = -190.080532 kcal Electronic energy + Delta-G solvation = -27760.392658 eV Core-core repulsion = 23709.337052 eV Total energy + Delta-G solvation = -4051.055606 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.154 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.08492 -41.32007 -40.09882 -38.78070 -37.73542 -37.50067 -36.67616 -33.21891 -32.28461 -31.78655 -31.37378 -28.79181 -26.98160 -26.78114 -24.87731 -23.74223 -23.49401 -22.09519 -21.83269 -20.83863 -19.53797 -19.09063 -18.32324 -18.18109 -18.07780 -17.58262 -17.25438 -17.15051 -16.42705 -16.20905 -15.69180 -15.58666 -15.43898 -15.10797 -14.89058 -14.78037 -14.59905 -14.38435 -14.11394 -13.89278 -13.67608 -13.38164 -13.34014 -13.16744 -13.09394 -12.75255 -12.61675 -12.37863 -12.11883 -11.99583 -11.97800 -11.93288 -11.63356 -11.55621 -11.34389 -11.12106 -11.06662 -10.69030 -10.36276 -9.58292 -4.94573 -0.58503 -0.08753 1.20176 1.27643 1.48846 1.54879 1.85378 1.88346 2.38279 3.23943 3.30650 3.43906 3.50722 3.66666 3.69934 3.75522 3.78896 3.86136 3.96235 4.05244 4.10224 4.18107 4.19617 4.21661 4.29270 4.35725 4.38263 4.39480 4.51704 4.52498 4.54263 4.60777 4.62929 4.81704 4.83562 4.91657 4.96398 5.01090 5.09122 5.12292 5.12745 5.18392 5.21539 5.26114 5.36889 5.47138 6.09393 6.45356 6.60713 6.86847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.510 3.490 4 O -0.547 6.547 5 C -0.184 4.184 6 C -0.039 4.039 7 C -0.171 4.171 8 C -0.068 4.068 9 O -0.543 6.543 10 Si 0.798 3.202 11 C 0.190 3.810 12 O -0.305 6.305 13 C 0.053 3.947 14 C -0.083 4.083 15 H 0.077 0.923 16 C -0.110 4.110 17 C -0.148 4.148 18 C 0.099 3.901 19 H 0.062 0.938 20 O -0.593 6.593 21 C -0.115 4.115 22 C -0.103 4.103 23 C -0.210 4.210 24 C -0.004 4.004 25 H 0.061 0.939 26 H 0.139 0.861 27 H 0.061 0.939 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.376 0.624 31 H -0.272 1.272 32 H -0.298 1.298 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.393 0.607 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.177 0.823 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 -5.271 0.395 6.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.357 3.643 4 O -0.440 6.440 5 C -0.185 4.185 6 C -0.057 4.057 7 C -0.172 4.172 8 C -0.177 4.177 9 O -0.350 6.350 10 Si 0.702 3.298 11 C 0.142 3.858 12 O -0.218 6.218 13 C -0.021 4.021 14 C -0.101 4.101 15 H 0.095 0.905 16 C -0.147 4.147 17 C -0.185 4.185 18 C 0.041 3.959 19 H 0.080 0.920 20 O -0.401 6.401 21 C -0.152 4.152 22 C -0.141 4.141 23 C -0.229 4.229 24 C -0.022 4.022 25 H 0.080 0.920 26 H 0.157 0.843 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.114 0.886 30 H 0.225 0.775 31 H -0.198 1.198 32 H -0.226 1.226 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.242 0.758 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.194 0.806 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.474 -4.442 -0.447 5.104 hybrid contribution -0.190 -1.147 0.740 1.378 sum 2.284 -5.590 0.293 6.045 Atomic orbital electron populations 1.23616 0.74126 1.06135 1.02557 1.86515 1.25283 1.31141 1.83772 1.21362 0.89538 0.81608 0.71768 1.90843 1.67697 1.37349 1.48100 1.18964 0.88927 0.95256 1.15370 1.20912 0.93774 0.96930 0.94098 1.19668 0.92126 0.95846 1.09531 1.25060 1.04789 0.98791 0.89104 1.86705 1.62653 1.53616 1.31988 0.92676 0.74696 0.86259 0.76183 1.19081 0.83353 0.92976 0.90342 1.86016 1.13935 1.35265 1.86546 1.23291 0.91338 0.83787 1.03692 1.21181 0.91194 0.98213 0.99529 0.90480 1.21516 0.94769 1.01398 0.97034 1.22215 0.96067 0.97646 1.02622 1.21948 0.80144 0.95516 0.98318 0.92005 1.86482 1.23949 1.82859 1.46858 1.21470 0.96363 1.00713 0.96672 1.21433 0.92732 0.95988 1.03942 1.21649 0.95335 0.97615 1.08264 1.21555 0.93351 0.97967 0.89358 0.92004 0.84319 0.92047 0.86216 0.88617 0.77529 1.19783 1.22565 0.89547 0.89763 0.90965 0.90910 0.90920 0.92159 0.75780 0.91441 0.92153 0.90092 0.89830 0.80621 0.81433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 10.57 113.37 1.20 1.21 16 2 O -0.35 -1.78 9.81 -56.57 -0.55 -2.34 16 3 C 0.51 5.30 7.89 70.25 0.55 5.85 16 4 O -0.55 -9.48 16.13 19.81 0.32 -9.16 16 5 C -0.18 -1.29 5.87 -20.09 -0.12 -1.41 16 6 C -0.04 -0.35 8.20 22.51 0.18 -0.17 16 7 C -0.17 -0.79 5.27 -19.81 -0.10 -0.89 16 8 C -0.07 -0.19 2.33 71.24 0.17 -0.03 16 9 O -0.54 -1.80 12.65 -148.98 -1.89 -3.69 16 10 Si 0.80 3.46 30.40 68.60 2.09 5.54 16 11 C 0.19 -0.06 6.63 22.64 0.15 0.09 16 12 O -0.31 1.11 8.54 -90.25 -0.77 0.34 16 13 C 0.05 -0.46 4.11 71.98 0.30 -0.17 16 14 C -0.08 0.64 2.43 -10.80 -0.03 0.61 16 15 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 16 C -0.11 0.75 5.10 30.59 0.16 0.90 16 17 C -0.15 0.69 5.55 30.59 0.17 0.86 16 18 C 0.10 -0.30 3.47 30.59 0.11 -0.19 16 19 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 16 20 O -0.59 -0.43 13.32 -148.98 -1.98 -2.41 16 21 C -0.11 0.38 5.57 30.59 0.17 0.55 16 22 C -0.10 0.85 5.20 30.59 0.16 1.01 16 23 C -0.21 0.73 9.01 22.33 0.20 0.93 16 24 C 0.00 0.00 9.61 22.52 0.22 0.22 16 25 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.14 -0.94 8.14 -2.39 -0.02 -0.96 16 27 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.12 1.55 4.51 -2.91 -0.01 1.54 16 29 H 0.10 -0.06 7.82 -2.39 -0.02 -0.07 16 30 H 0.38 -0.72 8.60 -74.06 -0.64 -1.36 16 31 H -0.27 -2.16 7.11 99.48 0.71 -1.46 16 32 H -0.30 -3.68 6.81 99.48 0.68 -3.00 16 33 H 0.09 -0.99 7.66 -2.39 -0.02 -1.01 16 34 H 0.08 -0.92 7.64 -2.39 -0.02 -0.94 16 35 H 0.07 -0.42 7.82 -2.39 -0.02 -0.44 16 36 H 0.07 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.07 -0.42 8.14 -2.39 -0.02 -0.43 16 38 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.39 -2.67 9.08 -74.06 -0.67 -3.35 16 40 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 43 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 44 H 0.18 -1.84 6.28 -2.91 -0.02 -1.85 16 45 H 0.17 -0.85 7.60 -2.91 -0.02 -0.88 16 Total: 0.00 -20.17 366.27 0.40 -19.76 By element: Atomic # 1 Polarization: -17.16 SS G_CDS: -0.29 Total: -17.45 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 3.48 Total: 9.39 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -4.88 Total: -17.25 kcal Atomic # 14 Polarization: 3.46 SS G_CDS: 2.09 Total: 5.54 kcal Total: -20.17 0.40 -19.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2787264_16737254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.318 kcal (2) G-P(sol) polarization free energy of solvation -20.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds