Wall clock time and date at job start Tue Mar 9 2021 18:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34744 * 116.99587 * 2 1 4 4 O 1.21502 * 120.00385 * 0.02562 * 3 2 1 5 5 C 1.47472 * 119.99956 * 180.02562 * 3 2 1 6 6 C 1.39773 * 120.09077 * 0.02562 * 5 3 2 7 7 C 1.37698 * 119.90593 * 179.97438 * 6 5 3 8 8 C 1.38992 * 120.09357 * 0.02562 * 7 6 5 9 9 O 1.35702 * 119.90647 * 179.97438 * 8 7 6 10 10 C 1.42895 * 116.99941 * 6.13845 * 9 8 7 11 11 Si 1.86300 * 109.47745 * 77.72337 * 10 9 8 12 12 C 1.86294 * 109.47093 * 66.37519 * 11 10 9 13 13 C 1.86298 * 109.47474 * 186.37848 * 11 10 9 14 14 C 1.86305 * 109.46798 * 306.37507 * 11 10 9 15 15 C 1.39031 * 120.18829 * 0.02562 * 8 7 6 16 16 C 1.50696 * 119.95794 * 179.97438 * 15 8 7 17 17 O 1.42910 * 109.46823 * 74.99685 * 16 15 8 18 18 Si 1.86296 * 109.47597 * 194.99727 * 16 15 8 19 19 H 1.48498 * 109.46989 * 59.99704 * 18 16 15 20 20 H 1.48505 * 109.47160 * 300.00402 * 18 16 15 21 21 H 1.48500 * 109.47428 * 180.02562 * 18 16 15 22 22 C 1.37660 * 120.08960 * 0.24936 * 15 8 7 23 23 H 1.09007 * 109.47049 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46890 * 299.99403 * 1 2 3 25 25 H 1.08993 * 109.47544 * 59.99327 * 1 2 3 26 26 H 1.08001 * 120.04687 * 359.97235 * 6 5 3 27 27 H 1.08005 * 119.95252 * 179.97438 * 7 6 5 28 28 H 1.09007 * 109.47296 * 197.72408 * 10 9 8 29 29 H 1.09006 * 109.47300 * 317.71853 * 10 9 8 30 30 H 1.09000 * 109.47278 * 60.00187 * 12 11 10 31 31 H 1.08999 * 109.47431 * 180.02562 * 12 11 10 32 32 H 1.09002 * 109.47240 * 300.00417 * 12 11 10 33 33 H 1.08995 * 109.47419 * 59.99558 * 13 11 10 34 34 H 1.08999 * 109.47049 * 180.02562 * 13 11 10 35 35 H 1.09000 * 109.46752 * 299.99725 * 13 11 10 36 36 H 1.09002 * 109.47148 * 54.65314 * 14 11 10 37 37 H 1.08994 * 109.46799 * 174.64590 * 14 11 10 38 38 H 1.08994 * 109.47525 * 294.65310 * 14 11 10 39 39 H 1.09002 * 109.46993 * 315.00166 * 16 15 8 40 40 H 0.96696 * 113.99801 * 299.99496 * 17 16 15 41 41 H 1.08005 * 120.04534 * 179.70904 * 22 15 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2006 0.0000 4 8 1.4019 2.2196 0.0005 5 6 3.5363 1.2779 -0.0006 6 6 4.2995 0.1069 -0.0017 7 6 5.6744 0.1835 -0.0027 8 6 6.3033 1.4230 -0.0022 9 8 7.6585 1.4940 -0.0027 10 6 8.3726 0.2639 -0.1400 11 14 8.3492 -0.2722 -1.9240 12 6 9.3251 0.9390 -2.9492 13 6 9.1094 -1.9664 -2.0734 14 6 6.5894 -0.3254 -2.5333 15 6 5.5480 2.5902 0.0000 16 6 6.2353 3.9313 0.0011 17 8 6.7619 4.1978 -1.3004 18 14 5.0092 5.2573 0.4584 19 1 4.4620 4.9803 1.8108 20 1 3.9015 5.2696 -0.5307 21 1 5.6864 6.5789 0.4589 22 6 4.1731 2.5226 0.0068 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 3.8116 -0.8566 -0.0016 27 1 6.2649 -0.7209 -0.0031 28 1 9.4040 0.4044 0.1837 29 1 7.8997 -0.5014 0.4757 30 1 10.3546 0.9701 -2.5927 31 1 9.3110 0.6256 -3.9931 32 1 8.8802 1.9303 -2.8618 33 1 8.5385 -2.6751 -1.4735 34 1 9.0961 -2.2799 -3.1173 35 1 10.1390 -1.9353 -1.7169 36 1 6.1150 0.6403 -2.3584 37 1 6.5810 -0.5461 -3.6006 38 1 6.0426 -1.1011 -1.9975 39 1 7.0484 3.9222 0.7271 40 1 7.4085 3.5461 -1.6041 41 1 3.5871 3.4298 0.0132 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_2787264_3095236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:03:31 Heat of formation + Delta-G solvation = -161.155688 kcal Electronic energy + Delta-G solvation = -23078.114592 eV Core-core repulsion = 19661.627729 eV Total energy + Delta-G solvation = -3416.486863 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.92570 -41.02887 -38.68064 -37.53549 -37.22138 -33.11329 -31.91046 -29.88456 -28.86830 -28.61746 -28.48737 -27.96790 -26.69416 -24.63001 -23.04265 -21.66528 -19.47096 -18.88247 -18.08865 -17.92771 -17.29328 -17.19642 -16.98098 -16.45599 -15.65515 -15.53484 -15.03735 -14.79489 -14.63477 -14.30728 -14.26281 -14.11535 -14.00868 -13.81912 -13.77431 -13.50207 -13.43238 -13.28314 -13.20110 -12.95973 -12.89691 -12.48261 -12.13019 -11.73949 -11.71397 -11.54704 -11.21491 -11.08900 -11.05438 -10.99649 -10.90602 -10.11590 -9.26393 -0.36089 0.09100 1.24661 1.25627 1.45217 1.53020 1.58835 1.61435 1.64433 1.71858 2.06020 2.16114 2.32923 2.59602 3.43274 3.58388 3.72282 3.84274 3.91375 4.05394 4.07008 4.20102 4.25816 4.28646 4.41851 4.50179 4.51996 4.53115 4.58912 4.62640 4.63133 4.64107 4.67725 4.73224 4.96532 5.03217 5.13480 5.28738 5.38740 5.40283 5.41634 5.45590 6.08711 6.61785 6.78729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.506 6.506 5 C -0.161 4.161 6 C -0.016 4.016 7 C -0.215 4.215 8 C 0.175 3.825 9 O -0.286 6.286 10 C -0.250 4.250 11 Si 0.990 3.010 12 C -0.445 4.445 13 C -0.449 4.449 14 C -0.452 4.452 15 C -0.160 4.160 16 C -0.080 4.080 17 O -0.535 6.535 18 Si 1.002 2.998 19 H -0.246 1.246 20 H -0.247 1.247 21 H -0.252 1.252 22 C -0.020 4.020 23 H 0.104 0.896 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.367 0.633 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.802 -5.080 0.227 5.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.356 3.644 4 O -0.395 6.395 5 C -0.163 4.163 6 C -0.034 4.034 7 C -0.233 4.233 8 C 0.128 3.872 9 O -0.198 6.198 10 C -0.370 4.370 11 Si 1.187 2.813 12 C -0.553 4.553 13 C -0.557 4.557 14 C -0.560 4.560 15 C -0.161 4.161 16 C -0.188 4.188 17 O -0.340 6.340 18 Si 0.822 3.178 19 H -0.169 1.169 20 H -0.171 1.171 21 H -0.176 1.176 22 C -0.038 4.038 23 H 0.122 0.878 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.163 0.837 27 H 0.162 0.838 28 H 0.132 0.868 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.215 0.785 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.731 -3.472 0.560 3.920 hybrid contribution 0.572 -1.317 -0.074 1.438 sum 2.303 -4.789 0.486 5.336 Atomic orbital electron populations 1.23328 0.75492 1.04010 1.02883 1.86524 1.23924 1.32446 1.84369 1.21028 0.88930 0.81603 0.72790 1.90866 1.66761 1.35990 1.45900 1.18855 0.89290 0.94443 1.13673 1.21265 0.92839 0.98205 0.91136 1.21279 0.95607 0.97102 1.09333 1.19122 0.83160 0.93268 0.91689 1.85966 1.14579 1.32852 1.86386 1.28336 0.99240 0.88797 1.20635 0.79833 0.68734 0.67721 0.65041 1.26034 1.08716 1.11286 1.09301 1.26071 1.07291 1.17102 1.05245 1.26474 1.17786 1.05037 1.06664 1.19504 0.92619 0.94624 1.09353 1.25164 1.04539 1.00138 0.88970 1.86720 1.62336 1.53220 1.31741 0.84618 0.76654 0.76435 0.80121 1.16943 1.17097 1.17563 1.21038 0.92917 0.97608 0.92244 0.87752 0.91639 0.91620 0.83749 0.83779 0.86807 0.90482 0.91024 0.90862 0.90749 0.91011 0.90540 0.90933 0.90784 0.90851 0.90722 0.90066 0.78490 0.83738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.01 10.57 101.05 1.07 1.06 16 2 O -0.36 -0.71 9.81 -40.61 -0.40 -1.11 16 3 C 0.51 1.91 7.89 34.49 0.27 2.18 16 4 O -0.51 -3.25 16.13 -19.27 -0.31 -3.56 16 5 C -0.16 -0.37 5.87 -104.97 -0.62 -0.99 16 6 C -0.02 0.00 9.61 -39.20 -0.38 -0.38 16 7 C -0.21 0.22 5.57 -39.50 -0.22 0.00 16 8 C 0.17 0.02 5.10 -39.01 -0.20 -0.18 16 9 O -0.29 0.26 8.67 -18.81 -0.16 0.10 16 10 C -0.25 0.84 5.31 101.05 0.54 1.38 16 11 Si 0.99 -4.17 11.67 -169.99 -1.98 -6.15 16 12 C -0.44 1.21 8.65 101.05 0.87 2.09 16 13 C -0.45 1.59 8.65 101.05 0.87 2.46 16 14 C -0.45 1.10 7.03 101.05 0.71 1.81 16 15 C -0.16 -0.24 5.28 -104.54 -0.55 -0.79 16 16 C -0.08 -0.09 2.33 36.00 0.08 -0.01 16 17 O -0.53 -0.87 12.65 -35.23 -0.45 -1.32 16 18 Si 1.00 1.74 25.73 -169.99 -4.37 -2.64 16 19 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 20 H -0.25 -0.72 6.74 56.52 0.38 -0.34 16 21 H -0.25 -0.59 7.11 56.52 0.40 -0.19 16 22 C -0.02 -0.05 8.20 -39.20 -0.32 -0.37 16 23 H 0.10 -0.31 8.14 -51.92 -0.42 -0.73 16 24 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 25 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 26 H 0.14 -0.27 7.60 -52.49 -0.40 -0.67 16 27 H 0.14 -0.52 4.73 -52.48 -0.25 -0.77 16 28 H 0.11 -0.50 7.96 -51.93 -0.41 -0.92 16 29 H 0.08 -0.33 6.06 -51.93 -0.31 -0.64 16 30 H 0.07 -0.20 7.96 -51.93 -0.41 -0.62 16 31 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 32 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 33 H 0.07 -0.27 7.96 -51.93 -0.41 -0.68 16 34 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 35 H 0.07 -0.26 7.96 -51.93 -0.41 -0.67 16 36 H 0.07 -0.07 6.25 -51.93 -0.32 -0.40 16 37 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 38 H 0.07 -0.22 6.54 -51.93 -0.34 -0.56 16 39 H 0.08 -0.01 7.82 -51.93 -0.41 -0.42 16 40 H 0.37 -0.37 8.60 45.56 0.39 0.02 16 41 H 0.15 0.43 4.46 -52.48 -0.23 0.20 16 LS Contribution 335.83 15.07 5.06 5.06 Total: 0.00 -6.22 335.83 -5.75 -11.97 By element: Atomic # 1 Polarization: -5.36 SS G_CDS: -5.27 Total: -10.63 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 2.13 Total: 8.27 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -1.32 Total: -5.88 kcal Atomic # 14 Polarization: -2.43 SS G_CDS: -6.36 Total: -8.79 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -6.22 -5.75 -11.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2787264_3095236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.184 kcal (2) G-P(sol) polarization free energy of solvation -6.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds